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ArticlesPeer ReviewedFull Text
Minimum information reporting in bio–nano experimental literature
Author / Creator:Faria, Matthew ; Björnmalm, Mattias ; Thurecht, Kristofer J. ; Kent, Stephen J. ; Parton, Robert G. ; Kavallaris, Maria ; Johnston, Angus P. R. ; Gooding, J. Justin ; Corrie, Simon R. ; Boyd, Ben J. ; Thordarson, Pall ; Whittaker, Andrew K. ; Stevens, Molly M. ; Prestidge, Clive A. ; Porter, Christopher J. H. ; Parak, Wolfgang J. ; Davis, Thomas P. ; Crampin, Edmund J. ; Caruso, Frank
Publisher:London: Nature Publishing Group UK
Journal title:Nature nanotechnology, 2018-09, Vol.13 (9), p.777-785
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A semantics, energy-based approach to automate biomodel composition
Author / Creator:Shahidi, Niloofar ; Pan, Michael ; Tran, Kenneth ; Crampin, Edmund J. ; Nickerson, David P.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2022-06, Vol.17 (6), p.e0269497-e0269497
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ArticlesPeer ReviewedFull Text
Modular assembly of dynamic models in systems biology
Author / Creator:Pan, Michael ; Gawthrop, Peter J. ; Cursons, Joseph ; Crampin, Edmund J.
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2021-10, Vol.17 (10), p.e1009513-e1009513
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Hierarchical semantic composition of biosimulation models using bond graphs
Author / Creator:Shahidi, Niloofar ; Pan, Michael ; Safaei, Soroush ; Tran, Kenneth ; Crampin, Edmund J. ; Nickerson, David P.
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2021-05, Vol.17 (5), p.e1008859-e1008859
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Insights on the impact of mitochondrial organisation on bioenergetics in high-resolution computational models of cardiac cell architecture
Author / Creator:Ghosh, Shouryadipta ; Tran, Kenneth ; Delbridge, Lea M. D. ; Hickey, Anthony J. R. ; Hanssen, Eric ; Crampin, Edmund J. ; Rajagopal, Vijay
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2018-12, Vol.14 (12), p.e1006640-e1006640
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Examination of the Effects of Heterogeneous Organization of RyR Clusters, Myofibrils and Mitochondria on Ca2+ Release Patterns in Cardiomyocytes
Author / Creator:Rajagopal, Vijay ; Bass, Gregory ; Walker, Cameron G. ; Crossman, David J. ; Petzer, Amorita ; Hickey, Anthony ; Siekmann, Ivo ; Hoshijima, Masahiko ; Ellisman, Mark H. ; Crampin, Edmund J. ; Soeller, Christian
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2015-09, Vol.11 (9), p.e1004417-e1004417
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Minimum Information About a Simulation Experiment (MIASE)
Author / Creator:Waltemath, Dagmar ; Adams, Richard ; Beard, Daniel A. ; Bergmann, Frank T. ; Bhalla, Upinder S. ; Britten, Randall ; Chelliah, Vijayalakshmi ; Cooling, Michael T. ; Cooper, Jonathan ; Crampin, Edmund J. ; Garny, Alan ; Hoops, Stefan ; Hucka, Michael ; Hunter, Peter ; Klipp, Edda ; Laibe, Camille ; Miller, Andrew K. ; Moraru, Ion ; Nickerson, David ; Nielsen, Poul ; Nikolski, Macha ; Sahle, Sven ; Sauro, Herbert M. ; Schmidt, Henning ; Snoep, Jacky L. ; Tolle, Dominic ; Wolkenhauer, Olaf ; Le Novère, Nicolas
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2011-04, Vol.7 (4), p.e1001122-e1001122
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ArticlesPeer ReviewedFull Text
Regulation of ERK-MAPK signaling in human epidermis
Author / Creator:Cursons, Joseph ; Gao, Jerry ; Hurley, Daniel G. ; Print, Cristin G. ; Dunbar, P. Rod ; Jacobs, Marc D. ; Crampin, Edmund J.
Publisher:England: BioMed Central Ltd
Journal title:BMC systems biology, 2015-07, Vol.9 (1), p.41-41, Article 41
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Semantics-Based Composition of Integrated Cardiomyocyte Models Motivated by Real-World Use Cases
Author / Creator:Neal, Maxwell L. ; Carlson, Brian E. ; Thompson, Christopher T. ; James, Ryan C. ; Kim, Karam G. ; Tran, Kenneth ; Crampin, Edmund J. ; Cook, Daniel L. ; Gennari, John H.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2015-12, Vol.10 (12), p.e0145621-e0145621
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ArticlesPeer ReviewedFull Text
Modeling Hypertrophic IP3 Transients in the Cardiac Myocyte
Author / Creator:Cooling, Michael ; Hunter, Peter ; Crampin, Edmund J.
Publisher:United States: Elsevier Inc
Journal title:Biophysical journal, 2007-11, Vol.93 (10), p.3421-3433
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ArticlesPeer ReviewedFull Text
Cell Cycle Gene Networks Are Associated with Melanoma Prognosis
Author / Creator:Wang, Li ; Hurley, Daniel G. ; Watkins, Wendy ; Araki, Hiromitsu ; Tamada, Yoshinori ; Muthukaruppan, Anita ; Ranjard, Louis ; Derkac, Eliane ; Imoto, Seiya ; Miyano, Satoru ; Crampin, Edmund J. ; Print, Cristin G.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2012-04, Vol.7 (4), p.e34247-e34247
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ArticlesPeer ReviewedFull Text
Integration of Steady-State and Temporal Gene Expression Data for the Inference of Gene Regulatory Networks
Author / Creator:Wang, Yi Kan ; Hurley, Daniel G. ; Schnell, Santiago ; Print, Cristin G. ; Crampin, Edmund J.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2013-08, Vol.8 (8), p.e72103-e72103
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ArticlesPeer ReviewedFull Text
A Dynamic Model of Excitation-Contraction Coupling during Acidosis in Cardiac Ventricular Myocytes
Author / Creator:Crampin, Edmund J. ; Smith, Nicolas P.
Publisher:United States: Elsevier Inc
Journal title:Biophysical journal, 2006-05, Vol.90 (9), p.3074-3090
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ArticlesPeer ReviewedFull Text
Regulation of cardiac cellular bioenergetics: mechanisms and consequences
Author / Creator:Tran, Kenneth ; Loiselle, Denis S. ; Crampin, Edmund J.
Publisher:United States: John Wiley & Sons, Inc
Journal title:Physiological reports, 2015-07, Vol.3 (7), p.e12464-n/a
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ArticlesPeer ReviewedFull Text
A few clarifications on MIRIBEL
Author / Creator:Faria, Matthew ; Björnmalm, Mattias ; Crampin, Edmund J. ; Caruso, Frank
Publisher:London: Nature Publishing Group UK
Journal title:Nature nanotechnology, 2020-01, Vol.15 (1), p.2-3
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ArticlesPeer ReviewedFull Text
Energy-based analysis of biochemical cycles using bond graphs
Author / Creator:Gawthrop, Peter J. ; Crampin, Edmund J.
Publisher:England: The Royal Society Publishing
Journal title:Proceedings of the Royal Society. A, Mathematical, physical, and engineering sciences, 2014-11, Vol.470 (2171), p.20140459-20140459
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ArticlesPeer ReviewedFull Text
A Graphical User Interface for a Method to Infer Kinetics and Network Architecture (MIKANA)
Author / Creator:Mourão, Márcio A. ; Srividhya, Jeyaraman ; McSharry, Patrick E. ; Crampin, Edmund J. ; Schnell, Santiago
Publisher:United States: Public Library of Science
Journal title:PloS one, 2011-11, Vol.6 (11), p.e27534-e27534
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ArticlesPeer ReviewedFull Text
Mode Transitions in a Model Reaction–Diffusion System Driven by Domain Growth and Noise
Author / Creator:Barrass, Iain ; Crampin, Edmund J. ; Maini, Philip K.
Publisher:United States: Springer Nature B.V
Journal title:Bulletin of mathematical biology, 2006-07, Vol.68 (5), p.981-995
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ArticlesPeer ReviewedFull Text
Predicting population extinction in lattice-based birth–death–movement models
Author / Creator:Johnston, Stuart T. ; Simpson, Matthew J. ; Crampin, Edmund J.
Publisher:The Royal Society Publishing
Journal title:Proceedings of the Royal Society. A, Mathematical, physical, and engineering sciences, 2020-06, Vol.476 (2238), p.20200089-20200089
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ArticlesPeer ReviewedFull Text
A Bayesian Search for Transcriptional Motifs
Author / Creator:Miller, Andrew K. ; Print, Cristin G. ; Nielsen, Poul M. F. ; Crampin, Edmund J.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2010-11, Vol.5 (11), p.e13897
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Showing 1 to 20 of 91 results

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Minimum information reporting in bio–nano experimental literature

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A semantics, energy-based approach to automate biomodel composition

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Modular assembly of dynamic models in systems biology

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Hierarchical semantic composition of biosimulation models using bond graphs

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Insights on the impact of mitochondrial organisation on bioenergetics in high-resolution computational models of cardiac cell architecture

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Examination of the Effects of Heterogeneous Organization of RyR Clusters, Myofibrils and Mitochondria on Ca2+ Release Patterns in Cardiomyocytes

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Minimum Information About a Simulation Experiment (MIASE)

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Regulation of ERK-MAPK signaling in human epidermis

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Semantics-Based Composition of Integrated Cardiomyocyte Models Motivated by Real-World Use Cases

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Modeling Hypertrophic IP3 Transients in the Cardiac Myocyte

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Cell Cycle Gene Networks Are Associated with Melanoma Prognosis

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Integration of Steady-State and Temporal Gene Expression Data for the Inference of Gene Regulatory Networks

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A Dynamic Model of Excitation-Contraction Coupling during Acidosis in Cardiac Ventricular Myocytes

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Regulation of cardiac cellular bioenergetics: mechanisms and consequences

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A few clarifications on MIRIBEL

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Energy-based analysis of biochemical cycles using bond graphs

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A Graphical User Interface for a Method to Infer Kinetics and Network Architecture (MIKANA)

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Mode Transitions in a Model Reaction–Diffusion System Driven by Domain Growth and Noise

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Predicting population extinction in lattice-based birth–death–movement models

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A Bayesian Search for Transcriptional Motifs

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