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Whole-cell modeling in yeast predicts compartment-specific proteome constraints that drive metabolic strategies
Author / Creator:Elsemman, Ibrahim E. ; Rodriguez Prado, Angelica ; Grigaitis, Pranas ; Garcia Albornoz, Manuel ; Harman, Victoria ; Holman, Stephen W. ; van Heerden, Johan ; Bruggeman, Frank J. ; Bisschops, Mark M. M. ; Sonnenschein, Nikolaus ; Hubbard, Simon ; Beynon, Rob ; Daran-Lapujade, Pascale ; Nielsen, Jens ; Teusink, Bas
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2022-02, Vol.13 (1), p.801-801, Article 801
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amdSYM, a new dominant recyclable marker cassette for Saccharomyces cerevisiae
Author / Creator:Solis-Escalante, Daniel ; Kuijpers, Niels G.A. ; Nadine, Bongaerts ; Bolat, Irina ; Bosman, Lizanne ; Pronk, Jack T. ; Daran, Jean-Marc ; Pascale, Daran-Lapujade
Publisher:Oxford, UK: Blackwell Publishing Ltd
Journal title:FEMS yeast research, 2013-02, Vol.13 (1), p.126-139
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Proteome analysis of yeast response to various nutrient limitations
Author / Creator:Kolkman, Annemieke ; Daran‐Lapujade, Pascale ; Fullaondo, Asier ; Olsthoorn, Maurien M A ; Pronk, Jack T ; Slijper, Monique ; Heck, Albert J R
Publisher:London: Nature Publishing Group UK
Journal title:Molecular systems biology, 2006, Vol.2 (1), p.2006.0026-n/a
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Combinatorial effects of environmental parameters on transcriptional regulation in Saccharomyces cerevisiae: A quantitative analysis of a compendium of chemostat-based transcriptome data
Author / Creator:Knijnenburg, Theo A ; Daran, Jean-Marc G ; van den Broek, Marcel A ; Daran-Lapujade, Pascale AS ; de Winde, Johannes H ; Pronk, Jack T ; Reinders, Marcel JT ; Wessels, Lodewyk FA
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2009-01, Vol.10 (1), p.53-53
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Transcription factor control of growth rate dependent genes in Saccharomyces cerevisiae: A three factor design
Author / Creator:Fazio, Alessandro ; Jewett, Michael C ; Daran-Lapujade, Pascale ; Mustacchi, Roberta ; Usaite, Renata ; Pronk, Jack T ; Workman, Christopher T ; Nielsen, Jens
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2008-07, Vol.9 (1), p.341-341, Article 341
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Cellular responses of Saccharomyces cerevisiae at near-zero growth rates: transcriptome analysis of anaerobic retentostat cultures
Author / Creator:Boender, Léonie G.M. ; van Maris, Antonius J.A. ; de Hulster, Erik A.F. ; Almering, Marinka J.H. ; van der Klei, Ida J. ; Veenhuis, Marten ; de Winde, Johannes H. ; Pronk, Jack T. ; Daran-Lapujade, Pascale
Publisher:Oxford, UK: Blackwell Publishing Ltd
Journal title:FEMS yeast research, 2011-12, Vol.11 (8), p.603-620
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CRISPR/Cas9: a molecular Swiss army knife for simultaneous introduction of multiple genetic modifications in Saccharomyces cerevisiae
Author / Creator:Mans, Robert ; van Rossum, Harmen M. ; Wijsman, Melanie ; Backx, Antoon ; Kuijpers, Niels G.A. ; van den Broek, Marcel ; Daran-Lapujade, Pascale ; Pronk, Jack T. ; van Maris, Antonius J.A. ; Daran, Jean-Marc G.
Publisher:England: Oxford University Press
Journal title:FEMS yeast research, 2015-03, Vol.15 (2)
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A protocol for introduction of multiple genetic modifications in Saccharomyces cerevisiae using CRISPR/Cas9
Author / Creator:Mans, Robert ; Wijsman, Melanie ; Daran-Lapujade, Pascale ; Daran, Jean-Marc
Publisher:England: Oxford University Press
Journal title:FEMS yeast research, 2018-11, Vol.18 (7), p.1
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Shot-gun proteomics: why thousands of unidentified signals matter
Author / Creator:den Ridder, Maxime ; Daran-Lapujade, Pascale ; Pabst, Martin
Publisher:England: Oxford University Press
Journal title:FEMS yeast research, 2020-02, Vol.20 (1), p.1
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A versatile, efficient strategy for assembly of multi-fragment expression vectors in Saccharomyces cerevisiae using 60 bp synthetic recombination sequences
Author / Creator:Kuijpers, Niels GA ; Solis-Escalante, Daniel ; Bosman, Lizanne ; van den Broek, Marcel ; Pronk, Jack T ; Daran, Jean-Marc ; Daran-Lapujade, Pascale
Publisher:England: BioMed Central Ltd
Journal title:Microbial cell factories, 2013-05, Vol.12 (1), p.47-47, Article 47
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De novo sequencing, assembly and analysis of the genome of the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D, a model for modern industrial biotechnology
Author / Creator:Nijkamp, Jurgen F ; van den Broek, Marcel ; Datema, Erwin ; de Kok, Stefan ; Bosman, Lizanne ; Luttik, Marijke A ; Daran-Lapujade, Pascale ; Vongsangnak, Wanwipa ; Nielsen, Jens ; Heijne, Wilbert HM ; Klaassen, Paul ; Paddon, Chris J ; Platt, Darren ; Kötter, Peter ; van Ham, Roeland C ; Reinders, Marcel JT ; Pronk, Jack T ; de Ridder, Dick ; Daran, Jean-Marc
Publisher:England: BioMed Central Ltd
Journal title:Microbial cell factories, 2012-03, Vol.11 (1), p.36-36, Article 36
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fluxes through glycolytic enzymes in Saccharomyces cerevisiae are predominantly regulated at posttranscriptional levels
Author / Creator:Daran-Lapujade, Pascale ; Rossell, Sergio ; van Gulik, Walter M ; Luttik, Marijke A.H ; de Groot, Marco J.L ; Slijper, Monique ; Heck, Albert J.R ; Daran, Jean-Marc ; de Winde, Johannes H ; Westerhoff, Hans V ; Pronk, Jack T ; Bakker, Barbara M
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2007-10, Vol.104 (40), p.15753-15758
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One-step assembly and targeted integration of multigene constructs assisted by the I-SceI meganuclease in Saccharomyces cerevisiae
Author / Creator:Kuijpers, Niels G.A. ; Chroumpi, Soultana ; Vos, Tim ; Solis-Escalante, Daniel ; Bosman, Lizanne ; Pronk, Jack T. ; Daran, Jean-Marc ; Daran-Lapujade, Pascale
Publisher:Oxford, UK: Blackwell Publishing Ltd
Journal title:FEMS yeast research, 2013-12, Vol.13 (8), p.769-781
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Efficient simultaneous excision of multiple selectable marker cassettes using I‐SceI‐induced double‐strand DNA breaks in Saccharomyces cerevisiae
Author / Creator:Solis‐Escalante, Daniel ; Kuijpers, Niels G.A ; Linden, Franka H ; Pronk, Jack T ; Daran, Jean‐Marc ; Daran‐Lapujade, Pascale
Publisher:Oxford, UK: Published by Elsevier Science B.V. on behalf of the Federation of European Microbiological Societies
Journal title:FEMS yeast research, 2014-08, Vol.14 (5), p.741-754
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New insights into the Saccharomyces cerevisiae fermentation switch: Dynamic transcriptional response to anaerobicity and glucose-excess
Author / Creator:van den Brink, Joost ; Daran-Lapujade, Pascale ; Pronk, Jack T ; de Winde, Johannes H
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2008-02, Vol.9 (1), p.100-100, Article 100
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An atypical PMR2 locus is responsible for hypersensitivity to sodium and lithium cations in the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D
Author / Creator:Daran-Lapujade, Pascale ; Daran, Jean-Marc ; Luttik, Marijke A.H. ; Almering, Marinka J.H. ; Pronk, Jack T. ; Kötter, Peter
Publisher:Oxford, UK: Blackwell Publishing Ltd
Journal title:FEMS yeast research, 2009-08, Vol.9 (5), p.789-792
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Exploiting combinatorial cultivation conditions to infer transcriptional regulation
Author / Creator:Knijnenburg, Theo A ; de Winde, Johannes H ; Daran, Jean-Marc ; Daran-Lapujade, Pascale ; Pronk, Jack T ; Reinders, Marcel JT ; Wessels, Lodewyk FA
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2007-01, Vol.8 (1), p.25-25, Article 25
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Comparative genotyping of the Saccharomyces cerevisiae laboratory strains S288C and CEN.PK113-7D using oligonucleotide microarrays
Author / Creator:Daran-Lapujade, Pascale ; Daran, Jean-Marc ; Kötter, Peter ; Petit, Thomas ; Piper, Matthew D.W ; Pronk, Jack T
Publisher:Oxford, UK: Elsevier B.V
Journal title:FEMS yeast research, 2003-12, Vol.4 (3), p.259-269
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Multiplex genome editing of microorganisms using CRISPR-Cas
Author / Creator:Adiego-Pérez, Belén ; Randazzo, Paola ; Daran, Jean Marc ; Verwaal, René ; Roubos, Johannes A ; Daran-Lapujade, Pascale ; van der Oost, John
Publisher:England: Oxford University Press
Journal title:FEMS microbiology letters, 2019-04, Vol.366 (8), p.1
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Glutamate as an inhibitor of phosphoenolpyruvate carboxylase activity in Corynebacterium glutamicum
Author / Creator:Delaunay, Stéphane ; Daran-Lapujade, Pascale ; Engasser, Jean-Marc ; Goergen, Jean-Louis
Publisher:Heidelberg: Oxford University Press
Journal title:Journal of industrial microbiology & biotechnology, 2004-05, Vol.31 (4), p.183-188
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Showing 1 to 20 of 37 results

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Whole-cell modeling in yeast predicts compartment-specific proteome constraints that drive metabolic strategies

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amdSYM, a new dominant recyclable marker cassette for Saccharomyces cerevisiae

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Proteome analysis of yeast response to various nutrient limitations

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Combinatorial effects of environmental parameters on transcriptional regulation in Saccharomyces cerevisiae: A quantitative analysis of a compendium of chemostat-based transcriptome data

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Transcription factor control of growth rate dependent genes in Saccharomyces cerevisiae: A three factor design

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Cellular responses of Saccharomyces cerevisiae at near-zero growth rates: transcriptome analysis of anaerobic retentostat cultures

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CRISPR/Cas9: a molecular Swiss army knife for simultaneous introduction of multiple genetic modifications in Saccharomyces cerevisiae

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A protocol for introduction of multiple genetic modifications in Saccharomyces cerevisiae using CRISPR/Cas9

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Shot-gun proteomics: why thousands of unidentified signals matter

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A versatile, efficient strategy for assembly of multi-fragment expression vectors in Saccharomyces cerevisiae using 60 bp synthetic recombination sequences

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De novo sequencing, assembly and analysis of the genome of the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D, a model for modern industrial biotechnology

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fluxes through glycolytic enzymes in Saccharomyces cerevisiae are predominantly regulated at posttranscriptional levels

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One-step assembly and targeted integration of multigene constructs assisted by the I-SceI meganuclease in Saccharomyces cerevisiae

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Efficient simultaneous excision of multiple selectable marker cassettes using I‐SceI‐induced double‐strand DNA breaks in Saccharomyces cerevisiae

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New insights into the Saccharomyces cerevisiae fermentation switch: Dynamic transcriptional response to anaerobicity and glucose-excess

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An atypical PMR2 locus is responsible for hypersensitivity to sodium and lithium cations in the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D

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Exploiting combinatorial cultivation conditions to infer transcriptional regulation

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Comparative genotyping of the Saccharomyces cerevisiae laboratory strains S288C and CEN.PK113-7D using oligonucleotide microarrays

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Multiplex genome editing of microorganisms using CRISPR-Cas

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Glutamate as an inhibitor of phosphoenolpyruvate carboxylase activity in Corynebacterium glutamicum

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