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ArticlesPeer ReviewedFull Text
FRET-based dynamic structural biology: Challenges, perspectives and an appeal for open-science practices
Author / Creator:Lerner, Eitan ; Barth, Anders ; Hendrix, Jelle ; Ambrose, Benjamin ; Birkedal, Victoria ; Blanchard, Scott C ; Börner, Richard ; Sung Chung, Hoi ; Cordes, Thorben ; Craggs, Timothy D ; Deniz, Ashok A ; Diao, Jiajie ; Fei, Jingyi ; Gonzalez, Ruben L ; Gopich, Irina V ; Ha, Taekjip ; Hanke, Christian A ; Haran, Gilad ; Hatzakis, Nikos S ; Hohng, Sungchul ; Hong, Seok-Cheol ; Hugel, Thorsten ; Ingargiola, Antonino ; Joo, Chirlmin ; Kapanidis, Achillefs N ; Kim, Harold D ; Laurence, Ted ; Lee, Nam Ki ; Lee, Tae-Hee ; Lemke, Edward A ; Margeat, Emmanuel ; Michaelis, Jens ; Michalet, Xavier ; Myong, Sua ; Nettels, Daniel ; Peulen, Thomas-Otavio ; Ploetz, Evelyn ; Razvag, Yair ; Robb, Nicole C ; Schuler, Benjamin ; Soleimaninejad, Hamid ; Tang, Chun ; Vafabakhsh, Reza ; Lamb, Don C ; Seidel, Claus AM ; Weiss, Shimon
Publisher:England: eLife Science Publications, Ltd
Journal title:eLife, 2021-03, Vol.10 (na)
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Modulation of allostery by protein intrinsic disorder
Author / Creator:Ferreon, Allan Chris M. ; Ferreon, Josephine C. ; Wright, Peter E. ; Deniz, Ashok A.
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2013-06, Vol.498 (7454), p.390-394
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Remote wiggling helps cold enzymes work
Author / Creator:Deniz, Ashok A
Publisher:London: Nature Publishing Group
Journal title:Nature (London), 2018-06, Vol.558 (7709), p.195-196
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Self-interaction of NPM1 modulates multiple mechanisms of liquid–liquid phase separation
Author / Creator:Mitrea, Diana M. ; Cika, Jaclyn A. ; Stanley, Christopher B. ; Nourse, Amanda ; Onuchic, Paulo L. ; Banerjee, Priya R. ; Phillips, Aaron H. ; Park, Cheon-Gil ; Deniz, Ashok A. ; Kriwacki, Richard W.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2018-02, Vol.9 (1), p.842-13, Article 842
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Nucleophosmin integrates within the nucleolus via multi-modal interactions with proteins displaying R-rich linear motifs and rRNA
Author / Creator:Mitrea, Diana M ; Cika, Jaclyn A ; Guy, Clifford S ; Ban, David ; Banerjee, Priya R ; Stanley, Christopher B ; Nourse, Amanda ; Deniz, Ashok A ; Kriwacki, Richard W
Publisher:England: eLife Science Publications, Ltd
Journal title:eLife, 2016-02, Vol.5
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Enzymes can adapt to cold by wiggling regions far from their active site
Author / Creator:Deniz, Ashok A.
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2018-06, Vol.558 (7709), p.195-196
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Interplay of α-synuclein binding and conformational switching probed by single-molecule fluorescence
Author / Creator:Ferreon, Allan Chris M ; Gambin, Yann ; Lemke, Edward A ; Deniz, Ashok A
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2009-04, Vol.106 (14), p.5645-5650
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The material properties of a bacterial-derived biomolecular condensate tune biological function in natural and synthetic systems
Author / Creator:Lasker, Keren ; Boeynaems, Steven ; Lam, Vinson ; Scholl, Daniel ; Stainton, Emma ; Briner, Adam ; Jacquemyn, Maarten ; Daelemans, Dirk ; Deniz, Ashok ; Villa, Elizabeth ; Holehouse, Alex S. ; Gitler, Aaron D. ; Shapiro, Lucy
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2022-09, Vol.13 (1), p.5643-15, Article 5643
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Divalent cations can control a switch-like behavior in heterotypic and homotypic RNA coacervates
Author / Creator:Onuchic, Paulo L. ; Milin, Anthony N. ; Alshareedah, Ibraheem ; Deniz, Ashok A. ; Banerjee, Priya R.
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2019-08, Vol.9 (1), p.12161-10, Article 12161
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Spatial and functional arrangement of Ebola virus polymerase inside phase-separated viral factories
Author / Creator:Fang, Jingru ; Castillon, Guillaume ; Phan, Sebastien ; McArdle, Sara ; Hariharan, Chitra ; Adams, Aiyana ; Ellisman, Mark H. ; Deniz, Ashok A. ; Saphire, Erica Ollmann
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2023-07, Vol.14 (1), p.4159-4159, Article 4159
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Reentrant DNA shells tune polyphosphate condensate size
Author / Creator:Chawla, Ravi ; Tom, Jenna K. A. ; Boyd, Tumara ; Tu, Nicholas H. ; Bai, Tanxi ; Grotjahn, Danielle A. ; Park, Donghyun ; Deniz, Ashok A. ; Racki, Lisa R.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2024-10, Vol.15 (1), p.9258-15, Article 9258
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Topological Considerations in Biomolecular Condensation
Author / Creator:Das, Debapriya ; Deniz, Ashok A.
Publisher:Switzerland: MDPI AG
Journal title:Biomolecules (Basel, Switzerland), 2023-01, Vol.13 (1), p.151
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natively unfolded yeast prion monomer adopts an ensemble of collapsed and rapidly fluctuating structures
Author / Creator:Mukhopadhyay, Samrat ; Krishnan, Rajaraman ; Lemke, Edward A ; Lindquist, Susan ; Deniz, Ashok A
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2007-02, Vol.104 (8), p.2649-2654
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Conserved features of intermediates in amyloid assembly determine their benign or toxic states
Author / Creator:Krishnan, Rajaraman ; Goodman, Jessica L ; Mukhopadhyay, Samrat ; Pacheco, Chris D ; Lemke, Edward A ; Deniz, Ashok A ; Lindquist, Susan
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2012-07, Vol.109 (28), p.11172-11177
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Visualizing a one-way protein encounter complex by ultrafast single-molecule mixing
Author / Creator:Gambin, Yann ; VanDelinder, Virginia ; Ferreon, Allan Chris M ; Lemke, Edward A ; Groisman, Alex ; Deniz, Ashok A
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2011-03, Vol.8 (3), p.239-241
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Counteracting chemical chaperone effects on the single-molecule α-synuclein structural landscape
Author / Creator:Ferreon, Allan Chris M ; Moosa, Mahdi Muhammad ; Gambin, Yann ; Deniz, Ashok A
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2012-10, Vol.109 (44), p.17826-17831
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Ultrafast cooling reveals microsecond-scale biomolecular dynamics
Author / Creator:Polinkovsky, Mark E. ; Gambin, Yann ; Banerjee, Priya R. ; Erickstad, Michael J. ; Groisman, Alex ; Deniz, Ashok A.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2014-12, Vol.5 (1), p.5737-5737, Article 5737
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Direct single-molecule observation of a protein living in two opposed native structures
Author / Creator:Gambin, Yann ; Schug, Alexander ; Lemke, Edward A ; Lavinder, Jason J ; Ferreon, Allan Chris M ; Magliery, Thomas J ; Onuchic, José N ; Deniz, Ashok A
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2009-06, Vol.106 (25), p.10153-10158
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siRNA in Human Cells Selectively Localizes to Target RNA Sites
Author / Creator:Berezhna, Svitlana Y. ; Supekova, Lubica ; Supek, Frantisek ; Schultz, Peter G. ; Deniz, Ashok A.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2006-05, Vol.103 (20), p.7682-7687
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Denaturant-specific effects on the structural energetics of a protein-denatured ensemble
Author / Creator:Moosa, Mahdi Muhammad ; Goodman, Asha Z. ; Ferreon, Josephine C. ; Lee, Chul Won ; Ferreon, Allan Chris M. ; Deniz, Ashok A.
Publisher:Cham: Springer International Publishing
Journal title:European biophysics journal, 2018-01, Vol.47 (1), p.89-94
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Showing 1 to 20 of 36 results

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FRET-based dynamic structural biology: Challenges, perspectives and an appeal for open-science practices

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Modulation of allostery by protein intrinsic disorder

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Remote wiggling helps cold enzymes work

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Self-interaction of NPM1 modulates multiple mechanisms of liquid–liquid phase separation

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Nucleophosmin integrates within the nucleolus via multi-modal interactions with proteins displaying R-rich linear motifs and rRNA

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Enzymes can adapt to cold by wiggling regions far from their active site

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Interplay of α-synuclein binding and conformational switching probed by single-molecule fluorescence

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The material properties of a bacterial-derived biomolecular condensate tune biological function in natural and synthetic systems

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Divalent cations can control a switch-like behavior in heterotypic and homotypic RNA coacervates

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Spatial and functional arrangement of Ebola virus polymerase inside phase-separated viral factories

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Reentrant DNA shells tune polyphosphate condensate size

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Topological Considerations in Biomolecular Condensation

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natively unfolded yeast prion monomer adopts an ensemble of collapsed and rapidly fluctuating structures

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Conserved features of intermediates in amyloid assembly determine their benign or toxic states

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Visualizing a one-way protein encounter complex by ultrafast single-molecule mixing

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Counteracting chemical chaperone effects on the single-molecule α-synuclein structural landscape

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Ultrafast cooling reveals microsecond-scale biomolecular dynamics

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Direct single-molecule observation of a protein living in two opposed native structures

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siRNA in Human Cells Selectively Localizes to Target RNA Sites

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Denaturant-specific effects on the structural energetics of a protein-denatured ensemble

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