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The Lung Microbiota of Healthy Mice Are Highly Variable, Cluster by Environment, and Reflect Variation in Baseline Lung Innate Immunity
Author / Creator:Dickson, Robert P. ; Erb-Downward, John R. ; Falkowski, Nicole R. ; Hunter, Ellen M. ; Ashley, Shanna L. ; Huffnagle, Gary B.
Publisher:United States: American Thoracic Society
Journal title:American journal of respiratory and critical care medicine, 2018-08, Vol.198 (4), p.497-508
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Lung Microbiota Contribute to Pulmonary Inflammation and Disease Progression in Pulmonary Fibrosis
Author / Creator:O’Dwyer, David N. ; Ashley, Shanna L. ; Gurczynski, Stephen J. ; Xia, Meng ; Wilke, Carol ; Falkowski, Nicole R. ; Norman, Katy C. ; Arnold, Kelly B. ; Huffnagle, Gary B. ; Salisbury, Margaret L. ; Han, MeiLan K. ; Flaherty, Kevin R. ; White, Eric S. ; Martinez, Fernando J. ; Erb-Downward, John R. ; Murray, Susan ; Moore, Bethany B. ; Dickson, Robert P.
Publisher:United States: American Thoracic Society
Journal title:American journal of respiratory and critical care medicine, 2019-05, Vol.199 (9), p.1127-1138
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Rapid Pathogen Identification in Bacterial Pneumonia Using Real-Time Metagenomics
Author / Creator:Pendleton, Kathryn M. ; Erb-Downward, John R. ; Bao, Yuwei ; Branton, William R. ; Falkowski, Nicole R. ; Newton, Duane W. ; Huffnagle, Gary B. ; Dickson, Robert P.
Publisher:United States: American Thoracic Society
Journal title:American journal of respiratory and critical care medicine, 2017-12, Vol.196 (12), p.1610-1612
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Antibiotics cause metabolic changes in mice primarily through microbiome modulation rather than behavioral changes
Author / Creator:Bongers, Kale S. ; McDonald, Roderick A. ; Winner, Katherine M. ; Falkowski, Nicole R. ; Brown, Christopher A. ; Baker, Jennifer M. ; Hinkle, Kevin J. ; Fergle, Daniel J. ; Dickson, Robert P.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2022-03, Vol.17 (3), p.e0265023-e0265023
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Bacterial Dissemination to the Brain in Sepsis
Author / Creator:Singer, Benjamin H. ; Dickson, Robert P. ; Denstaedt, Scott J. ; Newstead, Michael W. ; Kim, Kwi ; Falkowski, Nicole R. ; Erb-Downward, John R. ; Schmidt, Thomas M. ; Huffnagle, Gary B. ; Standiford, Theodore J.
Publisher:United States: American Thoracic Society
Journal title:American journal of respiratory and critical care medicine, 2018-03, Vol.197 (6), p.747-756
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Enrichment of the lung microbiome with gut bacteria in sepsis and the acute respiratory distress syndrome
Author / Creator:Dickson, Robert P. ; Singer, Benjamin H. ; Newstead, Michael W. ; Falkowski, Nicole R. ; Erb-Downward, John R. ; Standiford, Theodore J. ; Huffnagle, Gary B.
Publisher:London: Nature Publishing Group UK
Journal title:Nature microbiology, 2016-07, Vol.1 (10), p.16113-16113, Article 16113
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Genomic and transcriptomic insights into vertebrate host-specific Lactobacillus johnsonii adaptation in the gastrointestinal tract
Author / Creator:Ravi, Keerthikka ; Falkowski, Nicole R. ; Huffnagle, Gary B.
Publisher:United States: American Society for Microbiology
Journal title:mSphere, 2025-05, p.e0005225
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Whole lung tissue is the preferred sampling method for amplicon-based characterization of murine lung microbiota
Author / Creator:Baker, Jennifer M. ; Hinkle, Kevin J. ; McDonald, Roderick A. ; Brown, Christopher A. ; Falkowski, Nicole R. ; Huffnagle, Gary B. ; Dickson, Robert P.
Publisher:England: BioMed Central
Journal title:Microbiome, 2021-05, Vol.9 (1), p.99-99, Article 99
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Modulation of Post-Antibiotic Bacterial Community Reassembly and Host Response by Candida albicans
Author / Creator:Erb Downward, John R. ; Falkowski, Nicole R. ; Mason, Katie L. ; Muraglia, Ryan ; Huffnagle, Gary B.
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2013-07, Vol.3 (1), p.2191, Article 2191
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Lung Dysbiosis, Inflammation, and Injury in Hematopoietic Cell Transplantation
Author / Creator:O’Dwyer, David N. ; Zhou, Xiaofeng ; Wilke, Carol A. ; Xia, Meng ; Falkowski, Nicole R. ; Norman, Katy C. ; Arnold, Kelly B. ; Huffnagle, Gary B. ; Murray, Susan ; Erb-Downward, John R. ; Yanik, Gregory A. ; Moore, Bethany B. ; Dickson, Robert P.
Publisher:United States: American Thoracic Society
Journal title:American journal of respiratory and critical care medicine, 2018-11, Vol.198 (10), p.1312-1321
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The bacterial density of clinical rectal swabs is highly variable, correlates with sequencing contamination, and predicts patient risk of extraintestinal infection
Author / Creator:Chanderraj, Rishi ; Brown, Christopher A. ; Hinkle, Kevin ; Falkowski, Nicole ; Woods, Robert J. ; Dickson, Robert P.
Publisher:England: BioMed Central
Journal title:Microbiome, 2022-01, Vol.10 (1), p.2-2, Article 2
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A steroid‐resistant cockroach allergen model is associated with lung and cecal microbiome changes
Author / Creator:Asai, Nobuhiro ; Ethridge, Alexander D. ; Fonseca, Wendy ; Yagi, Kazuma ; Rasky, Andrew J. ; Morris, Susan B. ; Falkowski, Nicole R. ; Huang, Yvonne J. ; Huffnagle, Gary B. ; Lukacs, Nicholas W.
Publisher:United States: John Wiley & Sons, Inc
Journal title:Physiological reports, 2023-07, Vol.11 (13), p.e15761-n/a
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The Systemic Inflammatory Response to Clostridium difficile Infection
Author / Creator:Rao, Krishna ; Erb-Downward, John R. ; Walk, Seth T. ; Micic, Dejan ; Falkowski, Nicole ; Santhosh, Kavitha ; Mogle, Jill A. ; Ring, Cathrin ; Young, Vincent B. ; Huffnagle, Gary B. ; Aronoff, David M.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2014-03, Vol.9 (3), p.e92578-e92578
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ArticlesPeer ReviewedFull Text
Correction to: Whole lung tissue is the preferred sampling method for amplicon-based characterization of murine lung microbiota
Author / Creator:Baker, Jennifer M. ; Hinkle, Kevin J. ; McDonald, Roderick A. ; Brown, Christopher A. ; Falkowski, Nicole R. ; Huffnagle, Gary B. ; Dickson, Robert P.
Publisher:London: BioMed Central Ltd
Journal title:Microbiome, 2021-07, Vol.9 (1), p.1-154, Article 154
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Reply: Clinical Metagenomics for the Diagnosis of Hospital-acquired Infections: Promises and Hurdles
Author / Creator:Pendleton, Kathryn M. ; Erb-Downward, John R. ; Bao, Yuwei ; Branton, William R. ; Falkowski, Nicole R. ; Newton, Duane W. ; Huffnagle, Gary B. ; Dickson, Robert P.
Publisher:United States: American Thoracic Society
Journal title:American journal of respiratory and critical care medicine, 2017-12, Vol.196 (12), p.1618-1619
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Gut Microbiota Predict Enterococcus Expansion but Not Vancomycin-Resistant Enterococcus Acquisition
Author / Creator:Chanderraj, Rishi ; Brown, Christopher A. ; Hinkle, Kevin ; Falkowski, Nicole ; Ranjan, Piyush ; Dickson, Robert P. ; Woods, Robert J.
Publisher:United States: American Society for Microbiology
Journal title:mSphere, 2020-11, Vol.5 (6)
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Genome Sequences of 12 Pseudomonas lundensis Strains Isolated from the Lungs of Humans
Author / Creator:Scales, Brittan S ; Erb-Downward, John R ; Falkowski, Nicole R ; LiPuma, John J ; Huffnagle, Gary B
Publisher:Washington: American Society for Microbiology
Journal title:Microbiology resource announcements, 2018-02, Vol.6 (7)
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Effect of Laparotomy on Clearance and Cytokine Induction in Staphylococcus aureus infected Lungs
Author / Creator:Olszewski, Michal A ; Falkowski, Nicole R ; Surana, Rishi ; Sonstein, Joanne ; Hartman, Anne ; Moore, Bethany B ; Huffnagle, Gary B ; Toews, Galen B
Publisher:New York, NY: Am Thoracic Soc
Journal title:American journal of respiratory and critical care medicine, 2007-11, Vol.176 (9), p.921-929
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P-2213. Lung Microbiome Diversity Associated with Hospital Mortality in Intubated Patients Admitted to the ICU
Author / Creator:Bustos, Ingrid G G ; Baker, Jennifer M ; Brown, Christopher ; Falkowski, Nicole ; Ranjan, Piyush ; Mendez, Lina ; Sanabria-Herrera, Natalia ; Dickson, Robert ; Reyes, Luis Felipe F
Publisher:US: Oxford University Press
Journal title:Open forum infectious diseases, 2025-01, Vol.12 (Supplement_1)
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Application of an ecology-based analytic approach to discriminate signal and noise in low-biomass microbiome studies: whole lung tissue is the preferred sampling method for amplicon-based characteriza...
Author / Creator:Baker, Jennifer M ; Hinkle, Kevin J ; Mcdonald, Roderick A ; Falkowski, Nicole R ; Huffnagle, Gary B ; Dickson, Robert P
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2020-09
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Showing 1 to 20 of 25 results

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The Lung Microbiota of Healthy Mice Are Highly Variable, Cluster by Environment, and Reflect Variation in Baseline Lung Innate Immunity

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Lung Microbiota Contribute to Pulmonary Inflammation and Disease Progression in Pulmonary Fibrosis

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Rapid Pathogen Identification in Bacterial Pneumonia Using Real-Time Metagenomics

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Antibiotics cause metabolic changes in mice primarily through microbiome modulation rather than behavioral changes

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Bacterial Dissemination to the Brain in Sepsis

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Enrichment of the lung microbiome with gut bacteria in sepsis and the acute respiratory distress syndrome

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Genomic and transcriptomic insights into vertebrate host-specific Lactobacillus johnsonii adaptation in the gastrointestinal tract

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Whole lung tissue is the preferred sampling method for amplicon-based characterization of murine lung microbiota

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Modulation of Post-Antibiotic Bacterial Community Reassembly and Host Response by Candida albicans

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Lung Dysbiosis, Inflammation, and Injury in Hematopoietic Cell Transplantation

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The bacterial density of clinical rectal swabs is highly variable, correlates with sequencing contamination, and predicts patient risk of extraintestinal infection

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A steroid‐resistant cockroach allergen model is associated with lung and cecal microbiome changes

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The Systemic Inflammatory Response to Clostridium difficile Infection

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Correction to: Whole lung tissue is the preferred sampling method for amplicon-based characterization of murine lung microbiota

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Reply: Clinical Metagenomics for the Diagnosis of Hospital-acquired Infections: Promises and Hurdles

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Gut Microbiota Predict Enterococcus Expansion but Not Vancomycin-Resistant Enterococcus Acquisition

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Genome Sequences of 12 Pseudomonas lundensis Strains Isolated from the Lungs of Humans

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Effect of Laparotomy on Clearance and Cytokine Induction in Staphylococcus aureus infected Lungs

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P-2213. Lung Microbiome Diversity Associated with Hospital Mortality in Intubated Patients Admitted to the ICU

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Application of an ecology-based analytic approach to discriminate signal and noise in low-biomass microbiome studies: whole lung tissue is the preferred sampling method for amplicon-based characteriza...

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