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ArticlesPeer ReviewedFull Text
Rapid whole-genome sequencing decreases infant morbidity and cost of hospitalization
Author / Creator:Farnaes, Lauge ; Hildreth, Amber ; Sweeney, Nathaly M. ; Clark, Michelle M. ; Chowdhury, Shimul ; Nahas, Shareef ; Cakici, Julie A. ; Benson, Wendy ; Kaplan, Robert H. ; Kronick, Richard ; Bainbridge, Matthew N. ; Friedman, Jennifer ; Gold, Jeffrey J. ; Ding, Yan ; Veeraraghavan, Narayanan ; Dimmock, David ; Kingsmore, Stephen F.
Publisher:London: Nature Publishing Group UK
Journal title:Npj genomic medicine, 2018-04, Vol.3 (1), p.10-8, Article 10
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Clinical application of cell-free next-generation sequencing for infectious diseases at a tertiary children’s hospital
Author / Creator:Wilke, Julianne ; Ramchandar, Nanda ; Cannavino, Christopher ; Pong, Alice ; Tremoulet, Adriana ; Padua, Leidy Tovar ; Harvey, Helen ; Foley, Jennifer ; Farnaes, Lauge ; Coufal, Nicole G.
Publisher:London: BioMed Central Ltd
Journal title:BMC infectious diseases, 2021-06, Vol.21 (1), p.1-552, Article 552
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Diagnosis of cytomegalovirus infection from clinical whole genome sequencing
Author / Creator:Ramchandar, Nanda ; Ding, Yan ; Farnaes, Lauge ; Dimmock, David ; Hobbs, Charlotte ; Kingsmore, Stephen F. ; Bainbridge, Matthew
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2020-07, Vol.10 (1), p.11020-11020, Article 11020
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Diagnosis and treatment of a boy with IPEX syndrome presenting with diabetes in early infancy
Author / Creator:Kadakia, Sejal ; Farnaes, Lauge ; Dimmock, David ; Chowdhury, Shimul ; Ding, Yan ; Anderson, Eric J. ; Kingsmore, Stephen ; Newfield, Ron S.
Publisher:England: John Wiley & Sons, Inc
Journal title:Clinical case reports, 2019-11, Vol.7 (11), p.2123-2127
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ArticlesPeer ReviewedFull Text
Bactericidal Kinetics of Marine-Derived Napyradiomycins against Contemporary Methicillin-Resistant Staphylococcus aureus
Author / Creator:Haste, Nina M. ; Farnaes, Lauge ; Perera, Varahenage R. ; Fenical, William ; Nizet, Victor ; Hensler, Mary E.
Publisher:Switzerland: MDPI AG
Journal title:Marine drugs, 2011-04, Vol.9 (4), p.680-689
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Cloning and Expression of a Novel Human Antibody-Antigen Pair Associated with Felty's Syndrome
Author / Creator:Ditzel, Henrik J. ; Masaki, Yasufumi ; Nielsen, Heidi ; Farnaes, Lauge ; Burton, Dennis R.
Publisher:United States: National Academy of Sciences of the United States of America
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2000-08, Vol.97 (16), p.9234-9239
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Meta-analysis of the diagnostic and clinical utility of genome and exome sequencing and chromosomal microarray in children with suspected genetic diseases
Author / Creator:Clark, Michelle M. ; Stark, Zornitza ; Farnaes, Lauge ; Tan, Tiong Y. ; White, Susan M. ; Dimmock, David ; Kingsmore, Stephen F.
Publisher:London: Nature Publishing Group UK
Journal title:Npj genomic medicine, 2018-07, Vol.3 (1), p.16-10, Article 16
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Genomic sequencing in acutely ill infants: what will it take to demonstrate clinical value?
Author / Creator:Grosse, Scott D. ; Farnaes, Lauge
Publisher:New York: Nature Publishing Group US
Journal title:Genetics in medicine, 2019-02, Vol.21 (2), p.269-271
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672. Diagnosis of Rocky Mountain Spotted Fever Using Plasma Metagenomic Next-Generation Sequencing
Author / Creator:Chiang, Leslie ; Ramchandar, Nanda ; Coufal, Nicole ; Farnaes, Lauge ; Foley, Jennifer
Journal title:Open forum infectious diseases, 2021-12, Vol.8 (Supplement_1), p.S438-S438
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ArticlesPeer ReviewedFull Text
329. Performance of Next Generation Sequencing in Isolating a Pathogen in Pediatric Osteoarticular Infections
Author / Creator:Ramchandar, Nanda ; Burns, Jessica ; Pennock, Andrew ; Cannavino, Christopher R ; Farnaes, Lauge
Publisher:US: Oxford University Press
Journal title:Open forum infectious diseases, 2020-12, Vol.7 (Supplement_1), p.S236-S237
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ArticlesPeer ReviewedFull Text
2295. Streptococcus pneumoniae -Related Hemolytic Uremic Syndrome (pHUS) and the Identification of Matched Cross Country Serotypes by Plasma Next-Generation Sequencing (NGS)
Author / Creator:Yonts, Alexandra ; Farnaes, Lauge ; Venkatasubrahmanyam, Shivkumar ; Hong, David ; Hanisch, Benjamin
Publisher:Oxford: Oxford University Press
Journal title:Open forum infectious diseases, 2018-11, Vol.5 (suppl_1), p.S680-S680
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ArticlesPeer ReviewedFull Text
526. Antimicrobial Selection Based on Precision Metagenomics Compared with Standard Urine Culture/Susceptibility: A Reliability and Inter-rater Agreement Analysis for Application in Patients with Urin...
Author / Creator:Hanson, Amy P ; Stinnett, Rita C ; Bhasin, Ajay ; Conrad, Heather ; Nguyen, David C ; Ramchandar, Nanda ; Boswell, Malcolm ; Stauffer, Stacie ; Farnaes, Lauge ; Briggs, Benjamin ; Schlaberg, Robert
Journal title:Open forum infectious diseases, 2022-12, Vol.9 (Supplement_2)
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ArticlesPeer ReviewedFull Text
Use of Metagenomic Next-Generation Sequencing to Identify Pathogens in Pediatric Osteoarticular Infections
Author / Creator:Ramchandar, Nanda ; Burns, Jessica ; Coufal, Nicole G ; Pennock, Andrew ; Briggs, Benjamin ; Stinnett, Rita ; Bradley, John ; Arnold, John ; Liu, George Y ; Pring, Maya ; Upasani, Vidyadhar V ; Rickert, Kathleen ; Dimmock, David ; Chiu, Charles ; Farnaes, Lauge ; Cannavino, Christopher
Publisher:US: Oxford University Press
Journal title:Open forum infectious diseases, 2021-07, Vol.8 (7), p.ofab346-ofab346
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ArticlesPeer ReviewedFull Text
Metagenomic Next-Generation Sequencing for Pathogen Detection and Transcriptomic Analysis in Pediatric Central Nervous System Infections
Author / Creator:Ramchandar, Nanda ; Coufal, Nicole G ; Warden, Anna S ; Briggs, Benjamin ; Schwarz, Toni ; Stinnett, Rita ; Xie, Heng ; Schlaberg, Robert ; Foley, Jennifer ; Clarke, Christina ; Waldeman, Bryce ; Enriquez, Claudia ; Osborne, Stephanie ; Arrieta, Antonio ; Salyakina, Daria ; Janvier, Michelin ; Sendi, Prithvi ; Totapally, Balagangadhar R ; Dimmock, David ; Farnaes, Lauge
Publisher:US: Oxford University Press
Journal title:Open forum infectious diseases, 2021-06, Vol.8 (6), p.ofab104-ofab104
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ArticlesPeer ReviewedFull Text
670. Precision Metagenomic (PM) Sequencing Outperforms Conventional Urine Culture in Detecting Clinically Relevant Microorganisms
Author / Creator:Stinnett, Rita C ; Kent, Bethany ; Mangifesta, Marta ; Kadam, Anagha ; Xie, Heng ; Stauffer, Stacie ; Lemon, Jamie ; Briggs, Benjamin ; Farnaes, Lauge ; Schlaberg, Robert
Publisher:US: Oxford University Press
Journal title:Open forum infectious diseases, 2021-12, Vol.8 (Supplement_1), p.S437-S438
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ArticlesPeer ReviewedFull Text
342. Clinical Utility of a Next Generation Sequencing Test for Pathogen Detection in Pediatric Central Nervous System Infections
Author / Creator:Ramchandar, Nanda ; Foley, Jennifer ; Enriquez, Claudia ; Osborne, Stephanie ; Arrieta, Antonio ; Sendi, Prithvi ; Totapally, Balagangadhar ; Dimmock, David ; Farnaes, Lauge ; Salyakina, Daria ; Janvier, Michelin J
Publisher:US: Oxford University Press
Journal title:Open forum infectious diseases, 2020-12, Vol.7 (Supplement_1), p.S241-S241
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ArticlesFull Text
Two cases of type-a Haemophilus influenzae meningitis within the same week in the same hospital are phylogenetically unrelated but recently exchanged capsule genes
Author / Creator:Terrat, Yves ; Farnaes, Lauge ; Bradley, John ; Tromas, Nicolas ; Shapiro, B Jesse
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2019-06
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ReportsFull Text
Diagnosis and treatment of a boy with IPEX syndrome presenting with diabetes in early infancy
Author / Creator:Kadakia, Sejal ; Farnaes, Lauge ; Dimmock, David ; Chowdhury, Shimul ; Ding, Yan ; Anderson, Eric J ; Kingsmore, Stephen ; Newfield, Ron S
Journal title:Clinical case reports, 2019, Vol.7 (11), p.2123-2127
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ArticlesFull Text
A meta-analysis of the diagnostic sensitivity and clinical utility of genome sequencing, exome sequencing and chromosomal microarray in children with suspected genetic diseases
Author / Creator:Clark, Michelle M ; Stark, Zornitza ; Farnaes, Lauge ; Tan, Tiong Y ; White, Susan M ; Dimmock, David ; Kingsmore, Stephen F
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2018-01
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ArticlesFull Text
Rapid Whole Genome Sequencing Decreases Morbidity and Healthcare Cost of Hospitalized Infants
Author / Creator:Farnaes, Lauge ; Hildreth, Amber ; Sweeney, Nathaly ; Clark, Michelle ; Chowdhury, Shimul ; Nahas, Shareef ; Cakici, Julie ; Benson, Wendy ; Kaplan, Robert ; Kronick, Richard ; Bainbridge, Matthew ; Friedman, Jennifer ; Gold, Jeffrey ; Ding, Yan ; Veeraraghavan, Narayanan ; Dimmock, David ; Kingsmore, Stephen ; Investigators, Rcigm
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2018-01
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Rapid whole-genome sequencing decreases infant morbidity and cost of hospitalization

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Clinical application of cell-free next-generation sequencing for infectious diseases at a tertiary children’s hospital

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Diagnosis of cytomegalovirus infection from clinical whole genome sequencing

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Diagnosis and treatment of a boy with IPEX syndrome presenting with diabetes in early infancy

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Bactericidal Kinetics of Marine-Derived Napyradiomycins against Contemporary Methicillin-Resistant Staphylococcus aureus

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Cloning and Expression of a Novel Human Antibody-Antigen Pair Associated with Felty's Syndrome

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Meta-analysis of the diagnostic and clinical utility of genome and exome sequencing and chromosomal microarray in children with suspected genetic diseases

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Genomic sequencing in acutely ill infants: what will it take to demonstrate clinical value?

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672. Diagnosis of Rocky Mountain Spotted Fever Using Plasma Metagenomic Next-Generation Sequencing

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329. Performance of Next Generation Sequencing in Isolating a Pathogen in Pediatric Osteoarticular Infections

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2295. Streptococcus pneumoniae -Related Hemolytic Uremic Syndrome (pHUS) and the Identification of Matched Cross Country Serotypes by Plasma Next-Generation Sequencing (NGS)

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526. Antimicrobial Selection Based on Precision Metagenomics Compared with Standard Urine Culture/Susceptibility: A Reliability and Inter-rater Agreement Analysis for Application in Patients with Urin...

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Use of Metagenomic Next-Generation Sequencing to Identify Pathogens in Pediatric Osteoarticular Infections

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Metagenomic Next-Generation Sequencing for Pathogen Detection and Transcriptomic Analysis in Pediatric Central Nervous System Infections

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670. Precision Metagenomic (PM) Sequencing Outperforms Conventional Urine Culture in Detecting Clinically Relevant Microorganisms

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342. Clinical Utility of a Next Generation Sequencing Test for Pathogen Detection in Pediatric Central Nervous System Infections

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Two cases of type-a Haemophilus influenzae meningitis within the same week in the same hospital are phylogenetically unrelated but recently exchanged capsule genes

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Diagnosis and treatment of a boy with IPEX syndrome presenting with diabetes in early infancy

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A meta-analysis of the diagnostic sensitivity and clinical utility of genome sequencing, exome sequencing and chromosomal microarray in children with suspected genetic diseases

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Rapid Whole Genome Sequencing Decreases Morbidity and Healthcare Cost of Hospitalized Infants

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