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Reference EntriesFull Text
Fengzhu Sun
Journal title:American Men & Women of Science, 2008
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ArticlesPeer ReviewedFull Text
HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps
Author / Creator:Du, Yuxuan ; Sun, Fengzhu
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2022-02, Vol.23 (1), p.63-63, Article 63
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ArticlesPeer ReviewedFull Text
MetaCC allows scalable and integrative analyses of both long-read and short-read metagenomic Hi-C data
Author / Creator:Du, Yuxuan ; Sun, Fengzhu
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2023-10, Vol.14 (1), p.6231-12, Article 6231
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ArticlesPeer ReviewedFull Text
A comparative analysis of mutual information methods for pairwise relationship detection in metagenomic data
Author / Creator:Francis, Dallace ; Sun, Fengzhu
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2024-08, Vol.25 (1), p.266-21, Article 266
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ArticlesPeer ReviewedFull Text
Batch normalization followed by merging is powerful for phenotype prediction integrating multiple heterogeneous studies
Author / Creator:Gao, Yilin ; Sun, Fengzhu
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2023-10, Vol.19 (10), p.e1010608-e1010608
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ArticlesPeer ReviewedFull Text
Association of relative brain age with tobacco smoking, alcohol consumption, and genetic variants
Author / Creator:Ning, Kaida ; Zhao, Lu ; Matloff, Will ; Sun, Fengzhu ; Toga, Arthur W.
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2020-01, Vol.10 (1), p.10, Article 10
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ArticlesPeer ReviewedFull Text
MetaBinner: a high-performance and stand-alone ensemble binning method to recover individual genomes from complex microbial communities
Author / Creator:Wang, Ziye ; Huang, Pingqin ; You, Ronghui ; Sun, Fengzhu ; Zhu, Shanfeng
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2023-01, Vol.24 (1), p.1-1, Article 1
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ArticlesPeer ReviewedFull Text
16S rRNA and metagenomic shotgun sequencing data revealed consistent patterns of gut microbiome signature in pediatric ulcerative colitis
Author / Creator:Zuo, Wenxuan ; Wang, Beibei ; Bai, Xin ; Luan, Yihui ; Fan, Yingying ; Michail, Sonia ; Sun, Fengzhu
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2022-04, Vol.12 (1), p.6421-6421, Article 6421
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ArticlesPeer ReviewedFull Text
Comparative studies of alignment, alignment-free and SVM based approaches for predicting the hosts of viruses based on viral sequences
Author / Creator:Li, Han ; Sun, Fengzhu
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2018-07, Vol.8 (1), p.10032-9, Article 10032
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ArticlesPeer ReviewedFull Text
VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data
Author / Creator:Ren, Jie ; Ahlgren, Nathan A. ; Lu, Yang Young ; Fuhrman, Jed A. ; Sun, Fengzhu
Publisher:England: BioMed Central Ltd
Journal title:Microbiome, 2017-07, Vol.5 (1), p.69-69, Article 69
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ArticlesPeer ReviewedFull Text
ViralCC retrieves complete viral genomes and virus-host pairs from metagenomic Hi-C data
Author / Creator:Du, Yuxuan ; Fuhrman, Jed A. ; Sun, Fengzhu
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2023-01, Vol.14 (1), p.502-11, Article 502
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ArticlesPeer ReviewedFull Text
MicroPro: using metagenomic unmapped reads to provide insights into human microbiota and disease associations
Author / Creator:Zhu, Zifan ; Ren, Jie ; Michail, Sonia ; Sun, Fengzhu
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2019-08, Vol.20 (1), p.154-154, Article 154
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ArticlesPeer ReviewedFull Text
Comparison of the effectiveness of different normalization methods for metagenomic cross-study phenotype prediction under heterogeneity
Author / Creator:Wang, Beibei ; Sun, Fengzhu ; Luan, Yihui
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2024-03, Vol.14 (1), p.7024-7024, Article 7024
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ArticlesPeer ReviewedFull Text
AC-PCoA: Adjustment for confounding factors using principal coordinate analysis
Author / Creator:Wang, Yu ; Sun, Fengzhu ; Lin, Wei ; Zhang, Shuqin
Publisher:San Francisco: Public Library of Science
Journal title:PLoS computational biology, 2022-07, Vol.18 (7), p.e1010184-e1010184
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ArticlesPeer ReviewedFull Text
Afann: bias adjustment for alignment-free sequence comparison based on sequencing data using neural network regression
Author / Creator:Tang, Kujin ; Ren, Jie ; Sun, Fengzhu
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2019-12, Vol.20 (1), p.266-266, Article 266
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ArticlesPeer ReviewedFull Text
Correlation detection strategies in microbial data sets vary widely in sensitivity and precision
Author / Creator:Weiss, Sophie ; Van Treuren, Will ; Lozupone, Catherine ; Faust, Karoline ; Friedman, Jonathan ; Deng, Ye ; Xia, Li Charlie ; Xu, Zhenjiang Zech ; Ursell, Luke ; Alm, Eric J ; Birmingham, Amanda ; Cram, Jacob A ; Fuhrman, Jed A ; Raes, Jeroen ; Sun, Fengzhu ; Zhou, Jizhong ; Knight, Rob
Publisher:London: Nature Publishing Group UK
Journal title:The ISME Journal, 2016-07, Vol.10 (7), p.1669-1681
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ArticlesPeer ReviewedFull Text
Effective binning of metagenomic contigs using contrastive multi-view representation learning
Author / Creator:Wang, Ziye ; You, Ronghui ; Han, Haitao ; Liu, Wei ; Sun, Fengzhu ; Zhu, Shanfeng
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2024-01, Vol.15 (1), p.585-585, Article 585
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ArticlesPeer ReviewedFull Text
Variance adjusted weighted UniFrac: a powerful beta diversity measure for comparing communities based on phylogeny
Author / Creator:Chang, Qin ; Luan, Yihui ; Sun, Fengzhu
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2011-04, Vol.12 (1), p.118-118, Article 118
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ArticlesPeer ReviewedFull Text
Benchmarking of alignment-free sequence comparison methods
Author / Creator:Zielezinski, Andrzej ; Girgis, Hani Z. ; Bernard, Guillaume ; Leimeister, Chris-Andre ; Tang, Kujin ; Dencker, Thomas ; Lau, Anna Katharina ; Röhling, Sophie ; Choi, Jae Jin ; Waterman, Michael S. ; Comin, Matteo ; Kim, Sung-Hou ; Vinga, Susana ; Almeida, Jonas S. ; Chan, Cheong Xin ; James, Benjamin T. ; Sun, Fengzhu ; Morgenstern, Burkhard ; Karlowski, Wojciech M.
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2019-07, Vol.20 (1), p.144-144, Article 144
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ArticlesPeer ReviewedFull Text
Parity is associated with cognitive function and brain age in both females and males
Author / Creator:Ning, Kaida ; Zhao, Lu ; Franklin, Meredith ; Matloff, Will ; Batta, Ishaan ; Arzouni, Nibal ; Sun, Fengzhu ; Toga, Arthur W.
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2020-04, Vol.10 (1), p.6100-6100, Article 6100
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Showing 1 to 20 of 123 results

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Fengzhu Sun

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HiCBin: binning metagenomic contigs and recovering metagenome-assembled genomes using Hi-C contact maps

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MetaCC allows scalable and integrative analyses of both long-read and short-read metagenomic Hi-C data

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A comparative analysis of mutual information methods for pairwise relationship detection in metagenomic data

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Batch normalization followed by merging is powerful for phenotype prediction integrating multiple heterogeneous studies

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Association of relative brain age with tobacco smoking, alcohol consumption, and genetic variants

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MetaBinner: a high-performance and stand-alone ensemble binning method to recover individual genomes from complex microbial communities

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16S rRNA and metagenomic shotgun sequencing data revealed consistent patterns of gut microbiome signature in pediatric ulcerative colitis

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Comparative studies of alignment, alignment-free and SVM based approaches for predicting the hosts of viruses based on viral sequences

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VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data

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ViralCC retrieves complete viral genomes and virus-host pairs from metagenomic Hi-C data

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MicroPro: using metagenomic unmapped reads to provide insights into human microbiota and disease associations

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Comparison of the effectiveness of different normalization methods for metagenomic cross-study phenotype prediction under heterogeneity

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AC-PCoA: Adjustment for confounding factors using principal coordinate analysis

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Afann: bias adjustment for alignment-free sequence comparison based on sequencing data using neural network regression

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Correlation detection strategies in microbial data sets vary widely in sensitivity and precision

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Effective binning of metagenomic contigs using contrastive multi-view representation learning

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Variance adjusted weighted UniFrac: a powerful beta diversity measure for comparing communities based on phylogeny

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Benchmarking of alignment-free sequence comparison methods

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Parity is associated with cognitive function and brain age in both females and males

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