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Galagan, James E
Journal title:American Men & Women of Science : A Biographical Directory of Today’s Leaders in Physical, Biological and Related Sciences: GAL-HAL, 2022, p.3825-3825
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Galagan, James E
Journal title:American Men & Women of Science : A Biographical Directory of Today’s Leaders in Physical, Biological and Related Sciences: GAL-HAL, 2021, p.3807-3807
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Genomic insights into tuberculosis
Author / Creator:Galagan, James E.
Publisher:London: Nature Publishing Group UK
Journal title:Nature reviews. Genetics, 2014-05, Vol.15 (5), p.307-320
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A progesterone biosensor derived from microbial screening
Author / Creator:Grazon, Chloé ; Baer, R C. ; Kuzmanović, Uroš ; Nguyen, Thuy ; Chen, Mingfu ; Zamani, Marjon ; Chern, Margaret ; Aquino, Patricia ; Zhang, Xiaoman ; Lecommandoux, Sébastien ; Fan, Andy ; Cabodi, Mario ; Klapperich, Catherine ; Grinstaff, Mark W. ; Dennis, Allison M. ; Galagan, James E.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2020-03, Vol.11 (1), p.1276-1276, Article 1276
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Redefining fundamental concepts of transcription initiation in bacteria
Author / Creator:Mejía-Almonte, Citlalli ; Busby, Stephen J. W. ; Wade, Joseph T. ; van Helden, Jacques ; Arkin, Adam P. ; Stormo, Gary D. ; Eilbeck, Karen ; Palsson, Bernhard O. ; Galagan, James E. ; Collado-Vides, Julio
Publisher:London: Nature Publishing Group UK
Journal title:Nature reviews. Genetics, 2020-11, Vol.21 (11), p.699-714
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Whole-genome sequencing of rifampicin-resistant Mycobacterium tuberculosis strains identifies compensatory mutations in RNA polymerase genes
Author / Creator:Comas, Iñaki ; Borrell, Sonia ; Roetzer, Andreas ; Rose, Graham ; Malla, Bijaya ; Kato-Maeda, Midori ; Galagan, James ; Niemann, Stefan ; Gagneux, Sebastien
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2012-01, Vol.44 (1), p.106-110
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Interpreting Expression Data with Metabolic Flux Models: Predicting Mycobacterium tuberculosis Mycolic Acid Production
Author / Creator:Colijn, Caroline ; Brandes, Aaron ; Zucker, Jeremy ; Lun, Desmond S. ; Weiner, Brian ; Farhat, Maha R. ; Cheng, Tan-Yun ; Moody, D. Branch ; Murray, Megan ; Galagan, James E.
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2009-08, Vol.5 (8), p.e1000489
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The DNA-binding network of Mycobacterium tuberculosis
Author / Creator:Minch, Kyle J. ; Rustad, Tige R. ; Peterson, Eliza J. R. ; Winkler, Jessica ; Reiss, David J. ; Ma, Shuyi ; Hickey, Mark ; Brabant, William ; Morrison, Bob ; Turkarslan, Serdar ; Mawhinney, Chris ; Galagan, James E. ; Price, Nathan D. ; Baliga, Nitin S. ; Sherman, David R.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2015-01, Vol.6 (1), p.5829-5829
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Predictive biophysical neural network modeling of a compendium of in vivo transcription factor DNA binding profiles for Escherichia coli
Author / Creator:Lally, Patrick ; Gómez-Romero, Laura ; Tierrafría, Víctor H. ; Aquino, Patricia ; Rioualen, Claire ; Zhang, Xiaoman ; Kim, Sunyoung ; Baniulyte, Gabriele ; Plitnick, Jonathan ; Smith, Carol ; Babu, Mohan ; Collado-Vides, Julio ; Wade, Joseph T. ; Galagan, James E.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2025-05, Vol.16 (1), p.4255-16, Article 4255
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ArticlesPeer ReviewedFull Text
Mycobacterium tuberculosis Whole Genome Sequences From Southern India Suggest Novel Resistance Mechanisms and the Need for Region-Specific Diagnostics
Author / Creator:Manson, Abigail L. ; Abeel, Thomas ; Galagan, James E. ; Sundaramurthi, Jagadish Chandrabose ; Salazar, Alex ; Gehrmann, Thies ; Shanmugam, Siva Kumar ; Palaniyandi, Kannan ; Narayanan, Sujatha ; Swaminathan, Soumya ; Earl, Ashlee M.
Publisher:United States: Oxford University Press
Journal title:Clinical infectious diseases, 2017-06, Vol.64 (11), p.1494-1501
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Epigenetic competition reveals density-dependent regulation and target site plasticity of phosphorothioate epigenetics in bacteria
Author / Creator:Wu, Xiaolin ; Cao, Bo ; Aquino, Patricia ; Chiu, Tsu-Pei ; Chen, Chao ; Jiang, Susu ; Deng, Zixin ; Chen, Shi ; Rohs, Remo ; Wang, Lianrong ; Galagan, James E. ; Dedon, Peter C.
Publisher:Washington: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2020-06, Vol.117 (25), p.14322-14330
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Genomic analysis of globally diverse Mycobacterium tuberculosis strains provides insights into the emergence and spread of multidrug resistance
Author / Creator:Manson, Abigail L ; Cohen, Keira A ; Abeel, Thomas ; Desjardins, Christopher A ; Armstrong, Derek T ; Barry, Clifton E ; Brand, Jeannette ; Chapman, Sinéad B ; Cho, Sang-Nae ; Gabrielian, Andrei ; Gomez, James ; Jodals, Andreea M ; Joloba, Moses ; Jureen, Pontus ; Lee, Jong Seok ; Malinga, Lesibana ; Maiga, Mamoudou ; Nordenberg, Dale ; Noroc, Ecaterina ; Romancenco, Elena ; Salazar, Alex ; Ssengooba, Willy ; Velayati, A A ; Winglee, Kathryn ; Zalutskaya, Aksana ; Via, Laura E ; Cassell, Gail H ; Dorman, Susan E ; Ellner, Jerrold ; Farnia, Parissa ; Galagan, James E ; Rosenthal, Alex ; Crudu, Valeriu ; Homorodean, Daniela ; Hsueh, Po-Ren ; Narayanan, Sujatha ; Pym, Alexander S ; Skrahina, Alena ; Swaminathan, Soumya ; Van der Walt, Martie ; Alland, David ; Bishai, William R ; Cohen, Ted ; Hoffner, Sven ; Birren, Bruce W ; Earl, Ashlee M
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2017-03, Vol.49 (3), p.395-402
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Reconstruction and Validation of a Genome-Scale Metabolic Model for the Filamentous Fungus Neurospora crassa Using FARM
Author / Creator:Dreyfuss, Jonathan M. ; Zucker, Jeremy D. ; Hood, Heather M. ; Ocasio, Linda R. ; Sachs, Matthew S. ; Galagan, James E.
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2013-07, Vol.9 (7), p.e1003126
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The Mycobacterium tuberculosis regulatory network and hypoxia
Author / Creator:Galagan, James E. ; Minch, Kyle ; Peterson, Matthew ; Lyubetskaya, Anna ; Azizi, Elham ; Sweet, Linsday ; Gomes, Antonio ; Rustad, Tige ; Dolganov, Gregory ; Glotova, Irina ; Abeel, Thomas ; Mahwinney, Chris ; Kennedy, Adam D. ; Allard, René ; Brabant, William ; Krueger, Andrew ; Jaini, Suma ; Honda, Brent ; Yu, Wen-Han ; Hickey, Mark J. ; Zucker, Jeremy ; Garay, Christopher ; Weiner, Brian ; Sisk, Peter ; Stolte, Christian ; Winkler, Jessica K. ; Van de Peer, Yves ; Iazzetti, Paul ; Camacho, Diogo ; Dreyfuss, Jonathan ; Liu, Yang ; Dorhoi, Anca ; Mollenkopf, Hans-Joachim ; Drogaris, Paul ; Lamontagne, Julie ; Zhou, Yiyong ; Piquenot, Julie ; Park, Sang Tae ; Raman, Sahadevan ; Kaufmann, Stefan H. E. ; Mohney, Robert P. ; Chelsky, Daniel ; Moody, D. Branch ; Sherman, David R. ; Schoolnik, Gary K.
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2013-07, Vol.499 (7457), p.178-183
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Short-term genome evolution of Listeria monocytogenes in a non-controlled environment
Author / Creator:Orsi, Renato H ; Borowsky, Mark L ; Lauer, Peter ; Young, Sarah K ; Nusbaum, Chad ; Galagan, James E ; Birren, Bruce W ; Ivy, Reid A ; Sun, Qi ; Graves, Lewis M ; Swaminathan, Bala ; Wiedmann, Martin
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2008-11, Vol.9 (1), p.539-539, Article 539
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Comprehensive Definition of the SigH Regulon of Mycobacterium tuberculosis Reveals Transcriptional Control of Diverse Stress Responses
Author / Creator:Sharp, Jared D. ; Singh, Atul K. ; Park, Sang Tae ; Lyubetskaya, Anna ; Peterson, Matthew W. ; Gomes, Antonio L. C. ; Potluri, Lakshmi-Prasad ; Raman, Sahadevan ; Galagan, James E. ; Husson, Robert N.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2016-03, Vol.11 (3), p.e0152145-e0152145
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Dynamics of Pseudomonas aeruginosa genome evolution
Author / Creator:Mathee, Kalai ; Narasimhan, Giri ; Valdes, Camilo ; Qiu, Xiaoyun ; Matewish, Jody M ; Koehrsen, Michael ; Rokas, Antonis ; Yandava, Chandri N ; Engels, Reinhard ; Zeng, Erliang ; Olavarietta, Raquel ; Doud, Melissa ; Smith, Roger S ; Montgomery, Philip ; White, Jared R ; Godfrey, Paul A ; Kodira, Chinnappa ; Birren, Bruce ; Galagan, James E ; Lory, Stephen
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2008-02, Vol.105 (8), p.3100-3105
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Analysis of clock-regulated genes in Neurospora reveals widespread posttranscriptional control of metabolic potential
Author / Creator:Hurley, Jennifer M. ; Dasgupta, Arko ; Emerson, Julian M. ; Zhou, Xiaoying ; Ringelberg, Carol S. ; Knabe, Nicole ; Lipzen, Anna M. ; Lindquist, Erika A. ; Daum, Christopher G. ; Barry, Kerrie W. ; Grigoriev, Igor V. ; Smith, Kristina M. ; Galagan, James E. ; Bell-Pedersen, Deborah ; Freitag, Michael ; Cheng, Chao ; Loros, Jennifer J. ; Dunlap, Jay C.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2014-12, Vol.111 (48), p.16995-17002
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Use of whole genome sequencing to estimate the mutation rate of Mycobacterium tuberculosis during latent infection
Author / Creator:Ford, Christopher B ; Lin, Philana Ling ; Chase, Michael R ; Shah, Rupal R ; Iartchouk, Oleg ; Galagan, James ; Mohaideen, Nilofar ; Ioerger, Thomas R ; Sacchettini, James C ; Lipsitch, Marc ; Flynn, JoAnne L ; Fortune, Sarah M
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2011-05, Vol.43 (5), p.482-486
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Comparative Genomics Yields Insights into Niche Adaptation of Plant Vascular Wilt Pathogens
Author / Creator:Klosterman, Steven J. ; Subbarao, Krishna V. ; Kang, Seogchan ; Veronese, Paola ; Gold, Scott E. ; Thomma, Bart P. H. J. ; Chen, Zehua ; Henrissat, Bernard ; Lee, Yong-Hwan ; Park, Jongsun ; Garcia-Pedrajas, Maria D. ; Barbara, Dez J. ; Anchieta, Amy ; de Jonge, Ronnie ; Santhanam, Parthasarathy ; Maruthachalam, Karunakaran ; Atallah, Zahi ; Amyotte, Stefan G. ; Paz, Zahi ; Inderbitzin, Patrik ; Hayes, Ryan J. ; Heiman, David I. ; Young, Sarah ; Zeng, Qiandong ; Engels, Reinhard ; Galagan, James ; Cuomo, Christina A. ; Dobinson, Katherine F. ; Ma, Li-Jun
Publisher:United States: Public Library of Science
Journal title:PLoS pathogens, 2011-07, Vol.7 (7), p.e1002137-e1002137
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Galagan, James E

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Galagan, James E

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Genomic insights into tuberculosis

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A progesterone biosensor derived from microbial screening

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Redefining fundamental concepts of transcription initiation in bacteria

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Whole-genome sequencing of rifampicin-resistant Mycobacterium tuberculosis strains identifies compensatory mutations in RNA polymerase genes

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Interpreting Expression Data with Metabolic Flux Models: Predicting Mycobacterium tuberculosis Mycolic Acid Production

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The DNA-binding network of Mycobacterium tuberculosis

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Predictive biophysical neural network modeling of a compendium of in vivo transcription factor DNA binding profiles for Escherichia coli

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Mycobacterium tuberculosis Whole Genome Sequences From Southern India Suggest Novel Resistance Mechanisms and the Need for Region-Specific Diagnostics

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Epigenetic competition reveals density-dependent regulation and target site plasticity of phosphorothioate epigenetics in bacteria

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Genomic analysis of globally diverse Mycobacterium tuberculosis strains provides insights into the emergence and spread of multidrug resistance

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Reconstruction and Validation of a Genome-Scale Metabolic Model for the Filamentous Fungus Neurospora crassa Using FARM

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The Mycobacterium tuberculosis regulatory network and hypoxia

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Short-term genome evolution of Listeria monocytogenes in a non-controlled environment

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Comprehensive Definition of the SigH Regulon of Mycobacterium tuberculosis Reveals Transcriptional Control of Diverse Stress Responses

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Dynamics of Pseudomonas aeruginosa genome evolution

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Analysis of clock-regulated genes in Neurospora reveals widespread posttranscriptional control of metabolic potential

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Use of whole genome sequencing to estimate the mutation rate of Mycobacterium tuberculosis during latent infection

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Comparative Genomics Yields Insights into Niche Adaptation of Plant Vascular Wilt Pathogens

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