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ArticlesPeer ReviewedFull Text
Microbiome Survey of the Inflamed and Noninflamed Gut at Different Compartments Within the Gastrointestinal Tract of Inflammatory Bowel Disease Patients
Author / Creator:Forbes, Jessica D. ; Van Domselaar, Gary ; Bernstein, Charles N.
Publisher:Oxford, UK: Oxford University Press
Journal title:Inflammatory bowel diseases, 2016-04, Vol.22 (4), p.817-825
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A MiSeq-HyDRA platform for enhanced HIV drug resistance genotyping and surveillance
Author / Creator:Taylor, Tracy ; Lee, Emma R. ; Nykoluk, Mikaela ; Enns, Eric ; Liang, Binhua ; Capina, Rupert ; Gauthier, Marie-Krystel ; Domselaar, Gary Van ; Sandstrom, Paul ; Brooks, James ; Ji, Hezhao
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2019-06, Vol.9 (1), p.8970-11, Article 8970
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Correlation between Phenotypic and In Silico Detection of Antimicrobial Resistance in Salmonella enterica in Canada Using Staramr
Author / Creator:Bharat, Amrita ; Petkau, Aaron ; Avery, Brent P. ; Chen, Jessica C. ; Folster, Jason P. ; Carson, Carolee A. ; Kearney, Ashley ; Nadon, Celine ; Mabon, Philip ; Thiessen, Jeffrey ; Alexander, David C. ; Allen, Vanessa ; El Bailey, Sameh ; Bekal, Sadjia ; German, Greg J. ; Haldane, David ; Hoang, Linda ; Chui, Linda ; Minion, Jessica ; Zahariadis, George ; Domselaar, Gary Van ; Reid-Smith, Richard J. ; Mulvey, Michael R.
Publisher:Switzerland: MDPI AG
Journal title:Microorganisms (Basel), 2022-01, Vol.10 (2), p.292
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ArticlesPeer ReviewedFull Text
High-throughput genome sequencing of two Listeria monocytogenes clinical isolates during a large foodborne outbreak
Author / Creator:Gilmour, Matthew W ; Graham, Morag ; Van Domselaar, Gary ; Tyler, Shaun ; Kent, Heather ; Trout-Yakel, Keri M ; Larios, Oscar ; Allen, Vanessa ; Lee, Barbara ; Nadon, Celine
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2010-02, Vol.11 (1), p.120-120
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Bioinformatic data processing pipelines in support of next‐generation sequencing‐based HIV drug resistance testing: the Winnipeg Consensus
Author / Creator:Ji, Hezhao ; Enns, Eric ; Brumme, Chanson J. ; Parkin, Neil ; Howison, Mark ; Lee, Emma R. ; Capina, Rupert ; Marinier, Eric ; Avila‐Rios, Santiago ; Sandstrom, Paul ; Van Domselaar, Gary ; Harrigan, Richard ; Paredes, Roger ; Kantor, Rami ; Noguera‐Julian, Marc
Publisher:Switzerland: International AIDS Society
Journal title:Journal of the International AIDS Society, 2018-10, Vol.21 (10), p.e25193-n/a
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Genomic Characterization of Enterococcus casseliflavus Isolated from Beef Cows and Calves
Author / Creator:Zaidi, Sani-e-Zehra ; Zaheer, Rahat ; Zovoilis, Athanasios ; Fossen, Jayce ; Van Domselaar, Gary ; Waldner, Cheryl ; McAllister, Tim A.
Publisher:Switzerland: MDPI AG
Journal title:Microorganisms (Basel), 2025-04, Vol.13 (4), p.907
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Visualizing and comparing circular genomes using the CGView family of tools
Author / Creator:Stothard, Paul ; Grant, Jason R ; Van Domselaar, Gary
Publisher:England: Oxford University Press
Journal title:Briefings in bioinformatics, 2019-07, Vol.20 (4), p.1576-1582
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A comparative study of the gut microbiota in immune-mediated inflammatory diseases—does a common dysbiosis exist?
Author / Creator:Forbes, Jessica D. ; Chen, Chih-yu ; Knox, Natalie C. ; Marrie, Ruth-Ann ; El-Gabalawy, Hani ; de Kievit, Teresa ; Alfa, Michelle ; Bernstein, Charles N. ; Van Domselaar, Gary
Publisher:England: BioMed Central Ltd
Journal title:Microbiome, 2018-12, Vol.6 (1), p.221-221, Article 221
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Surveillance of Enterococcus spp. reveals distinct species and antimicrobial resistance diversity across a One-Health continuum
Author / Creator:Zaheer, Rahat ; Cook, Shaun R. ; Barbieri, Ruth ; Goji, Noriko ; Cameron, Andrew ; Petkau, Aaron ; Polo, Rodrigo Ortega ; Tymensen, Lisa ; Stamm, Courtney ; Song, Jiming ; Hannon, Sherry ; Jones, Tineke ; Church, Deirdre ; Booker, Calvin W. ; Amoako, Kingsley ; Van Domselaar, Gary ; Read, Ron R. ; McAllister, Tim A.
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2020-03, Vol.10 (1), p.3937, Article 3937
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ArticlesPeer ReviewedFull Text
Impact of sequencing depth on the characterization of the microbiome and resistome
Author / Creator:Zaheer, Rahat ; Noyes, Noelle ; Ortega Polo, Rodrigo ; Cook, Shaun R. ; Marinier, Eric ; Van Domselaar, Gary ; Belk, Keith E. ; Morley, Paul S. ; McAllister, Tim A.
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2018-04, Vol.8 (1), p.5890-11, Article 5890
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ArticlesPeer ReviewedFull Text
Performance comparison of next generation sequencing analysis pipelines for HIV-1 drug resistance testing
Author / Creator:Lee, Emma R. ; Parkin, Neil ; Jennings, Cheryl ; Brumme, Chanson J. ; Enns, Eric ; Casadellà, Maria ; Howison, Mark ; Coetzer, Mia ; Avila-Rios, Santiago ; Capina, Rupert ; Marinier, Eric ; Van Domselaar, Gary ; Noguera-Julian, Marc ; Kirkby, Don ; Knaggs, Jeff ; Harrigan, Richard ; Quiñones-Mateu, Miguel ; Paredes, Roger ; Kantor, Rami ; Sandstrom, Paul ; Ji, Hezhao
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2020-01, Vol.10 (1), p.1634-1634, Article 1634
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ArticlesPeer ReviewedFull Text
Use of a taxon-specific reference database for accurate metagenomics-based pathogen detection of Listeria monocytogenes in turkey deli meat and spinach
Author / Creator:Rumore, Jillian ; Walker, Matthew ; Pagotto, Franco ; Forbes, Jessica D. ; Peterson, Christy-Lynn ; Tyler, Andrea D. ; Graham, Morag ; Van Domselaar, Gary ; Nadon, Celine ; Reimer, Aleisha ; Knox, Natalie
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2023-06, Vol.24 (1), p.361-361, Article 361
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ArticlesPeer ReviewedFull Text
Whole genome sequencing and phylogenetic analysis of strains of the agent of Lyme disease Borrelia burgdorferi from Canadian emergence zones
Author / Creator:Tyler, Shaun ; Tyson, Shari ; Dibernardo, Antonia ; Drebot, Michael ; Feil, Edward J. ; Graham, Morag ; Knox, Natalie C. ; Lindsay, L. Robbin ; Margos, Gabriele ; Mechai, Samir ; Van Domselaar, Gary ; Thorpe, Harry A. ; Ogden, Nick H.
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2018-07, Vol.8 (1), p.10552-12, Article 10552
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ArticlesPeer ReviewedFull Text
Comparative diversity of microbiomes and Resistomes in beef feedlots, downstream environments and urban sewage influent
Author / Creator:Zaheer, Rahat ; Lakin, Steven M. ; Polo, Rodrigo Ortega ; Cook, Shaun R. ; Larney, Francis J. ; Morley, Paul S. ; Booker, Calvin W. ; Hannon, Sherry J. ; Van Domselaar, Gary ; Read, Ron R. ; McAllister, Tim A.
Publisher:England: BioMed Central Ltd
Journal title:BMC microbiology, 2019-08, Vol.19 (1), p.197-17, Article 197
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ArticlesPeer ReviewedFull Text
Comparison of Sample Preparation Methods Used for the Next-Generation Sequencing of Mycobacterium tuberculosis
Author / Creator:Tyler, Andrea D. ; Christianson, Sara ; Knox, Natalie C. ; Mabon, Philip ; Wolfe, Joyce ; Van Domselaar, Gary ; Graham, Morag R. ; Sharma, Meenu K.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2016-02, Vol.11 (2), p.e0148676-e0148676
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ArticlesPeer ReviewedFull Text
Comparative Genomics of Vibrio cholerae from Haiti, Asia, and Africa
Author / Creator:Reimer, Aleisha ; Domselaar, Gary ; Stroika, Steven ; Walker, Matthew ; Kent, Heather ; Tarr, Cheryl ; Talkington, Deborah ; Rowe, Lori ; Olsen-Rasmussen, Melissa ; Frace, Michael ; Sammons, Scott ; Dahourou, Georges ; Boncy, Jacques ; Smith, Anthony ; Mabon, Philip ; Petkau, Aaron ; Graham, Morag ; Gilmour, Matthew ; Gerner-Smidt, Peter
Publisher:United States: U.S. National Center for Infectious Diseases
Journal title:Emerging infectious diseases, 2011-11, Vol.17 (11), p.2113-2121
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Effect of Antimicrobial Use in Conventional Versus Natural Cattle Feedlots on the Microbiome and Resistome
Author / Creator:Lee, Catrione ; Zaheer, Rahat ; Munns, Krysty ; Holman, Devin B. ; Van Domselaar, Gary ; Zovoilis, Athanasios ; McAllister, Tim A.
Publisher:Switzerland: MDPI AG
Journal title:Microorganisms (Basel), 2023-12, Vol.11 (12), p.2982
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Application of whole genome sequence analysis to the study of Mycobacterium tuberculosis in Nunavut, Canada
Author / Creator:Tyler, Andrea D. ; Randell, Elaine ; Baikie, Maureen ; Antonation, Kym ; Janella, Debra ; Christianson, Sara ; Tyrrell, Gregory J. ; Graham, Morag ; Van Domselaar, Gary ; Sharma, Meenu K.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2017-10, Vol.12 (10), p.e0185656-e0185656
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ArticlesPeer ReviewedFull Text
A Robust PCR Protocol for HIV Drug Resistance Testing on Low-Level Viremia Samples
Author / Creator:Ji, Hezhao ; Sandstrom, Paul ; Bullard, Jared ; Liang, Binhua ; Patterson, Aileen P. ; Taylor, Tracy ; Gupta, Shivani ; Van Domselaar, Gary
Publisher:Cairo, Egypt: Hindawi Publishing Corporation
Journal title:BioMed research international, 2017-01, Vol.2017 (2017), p.1-6
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The gut microbiota in pediatric multiple sclerosis and demyelinating syndromes
Author / Creator:Tremlett, Helen ; Zhu, Feng ; Arnold, Douglas ; Bar‐Or, Amit ; Bernstein, Charles N. ; Bonner, Christine ; Forbes, Jessica D. ; Graham, Morag ; Hart, Janace ; Knox, Natalie C. ; Marrie, Ruth Ann ; Mirza, Ali I. ; O’Mahony, Julia ; Van Domselaar, Gary ; Yeh, E. Ann ; Zhao, Yinshan ; Banwell, Brenda ; Waubant, Emmanuelle
Publisher:United States: John Wiley & Sons, Inc
Journal title:Annals of clinical and translational neurology, 2021-12, Vol.8 (12), p.2252-2269
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Showing 1 to 20 of 65 results

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Microbiome Survey of the Inflamed and Noninflamed Gut at Different Compartments Within the Gastrointestinal Tract of Inflammatory Bowel Disease Patients

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A MiSeq-HyDRA platform for enhanced HIV drug resistance genotyping and surveillance

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Correlation between Phenotypic and In Silico Detection of Antimicrobial Resistance in Salmonella enterica in Canada Using Staramr

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High-throughput genome sequencing of two Listeria monocytogenes clinical isolates during a large foodborne outbreak

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Bioinformatic data processing pipelines in support of next‐generation sequencing‐based HIV drug resistance testing: the Winnipeg Consensus

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Genomic Characterization of Enterococcus casseliflavus Isolated from Beef Cows and Calves

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Visualizing and comparing circular genomes using the CGView family of tools

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A comparative study of the gut microbiota in immune-mediated inflammatory diseases—does a common dysbiosis exist?

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Surveillance of Enterococcus spp. reveals distinct species and antimicrobial resistance diversity across a One-Health continuum

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Impact of sequencing depth on the characterization of the microbiome and resistome

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Performance comparison of next generation sequencing analysis pipelines for HIV-1 drug resistance testing

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Use of a taxon-specific reference database for accurate metagenomics-based pathogen detection of Listeria monocytogenes in turkey deli meat and spinach

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Whole genome sequencing and phylogenetic analysis of strains of the agent of Lyme disease Borrelia burgdorferi from Canadian emergence zones

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Comparative diversity of microbiomes and Resistomes in beef feedlots, downstream environments and urban sewage influent

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Comparison of Sample Preparation Methods Used for the Next-Generation Sequencing of Mycobacterium tuberculosis

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Comparative Genomics of Vibrio cholerae from Haiti, Asia, and Africa

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Effect of Antimicrobial Use in Conventional Versus Natural Cattle Feedlots on the Microbiome and Resistome

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Application of whole genome sequence analysis to the study of Mycobacterium tuberculosis in Nunavut, Canada

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A Robust PCR Protocol for HIV Drug Resistance Testing on Low-Level Viremia Samples

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The gut microbiota in pediatric multiple sclerosis and demyelinating syndromes

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