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ArticlesPeer ReviewedFull Text
Dynamical Allocation of Cellular Resources as an Optimal Control Problem: Novel Insights into Microbial Growth Strategies
Author / Creator:Giordano, Nils ; Mairet, Francis ; Gouzé, Jean-Luc ; Geiselmann, Johannes ; de Jong, Hidde
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2016-03, Vol.12 (3), p.e1004802-e1004802
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Single-cell data reveal heterogeneity of investment in ribosomes across a bacterial population
Author / Creator:Pavlou, Antrea ; Cinquemani, Eugenio ; Pinel, Corinne ; Giordano, Nils ; Mathilde, Van Melle-Gateau ; Mihalcescu, Irina ; Geiselmann, Johannes ; de Jong, Hidde
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2025-01, Vol.16 (1), p.285-16, Article 285
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Shared control of gene expression in bacteria by transcription factors and global physiology of the cell
Author / Creator:Berthoumieux, Sara ; de Jong, Hidde ; Baptist, Guillaume ; Pinel, Corinne ; Ranquet, Caroline ; Ropers, Delphine ; Geiselmann, Johannes
Publisher:London: Nature Publishing Group UK
Journal title:Molecular systems biology, 2013, Vol.9 (1), p.634-n/a
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A synthetic growth switch based on controlled expression of RNA polymerase
Author / Creator:Izard, Jérôme ; Gomez Balderas, Cindy DC ; Ropers, Delphine ; Lacour, Stephan ; Song, Xiaohu ; Yang, Yifan ; Lindner, Ariel B ; Geiselmann, Johannes ; de Jong, Hidde
Publisher:London: Nature Publishing Group UK
Journal title:Molecular systems biology, 2015-11, Vol.11 (11), p.840-n/a
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Inference of Quantitative Models of Bacterial Promoters from Time-Series Reporter Gene Data
Author / Creator:Stefan, Diana ; Pinel, Corinne ; Pinhal, Stéphane ; Cinquemani, Eugenio ; Geiselmann, Johannes ; de Jong, Hidde
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2015-01, Vol.11 (1), p.e1004028-e1004028
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The Carbon Assimilation Network in Escherichia coli Is Densely Connected and Largely Sign-Determined by Directions of Metabolic Fluxes
Author / Creator:Baldazzi, Valentina ; Ropers, Delphine ; Markowicz, Yves ; Kahn, Daniel ; Geiselmann, Johannes ; de Jong, Hidde
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2010-06, Vol.6 (6), p.e1000812-e1000812
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ArticlesPeer ReviewedFull Text
Experimental and computational validation of models of fluorescent and luminescent reporter genes in bacteria
Author / Creator:de Jong, Hidde ; Ranquet, Caroline ; Ropers, Delphine ; Pinel, Corinne ; Geiselmann, Johannes
Publisher:England: BioMed Central Ltd
Journal title:BMC systems biology, 2010-04, Vol.4 (1), p.55-55, Article 55
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Parallel Changes in Global Protein Profiles During Long-Term Experimental Evolution in Escherichia coli
Author / Creator:Pelosi, Ludovic ; Kuhn, Lauriane ; Guetta, Dorian ; Garin, Jerome ; Geiselmann, Johannes ; Lenski, Richard E ; Schneider, Dominique
Publisher:United States: Genetics Soc America
Journal title:Genetics (Austin), 2006-08, Vol.173 (4), p.1851-1869
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ArticlesPeer ReviewedFull Text
The tRNA Function of SsrA Contributes to Controlling Repression of Bacteriophage Mu Prophage
Author / Creator:Ranquet, Caroline ; Geiselmann, Johannes ; Toussaint, Ariane
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2001-08, Vol.98 (18), p.10220-10225
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ArticlesPeer ReviewedFull Text
Structural Kinetics of Transcription Activation at the malT Promoter of Escherichia coli by UV Laser Footprinting
Author / Creator:Eichenberger, Patrick ; Dethiollaz, Sylvie ; Buc, Henri ; Geiselmann, Johannes
Publisher:United States: National Academy of Sciences of the United States of America
Journal title:Proceedings of the National Academy of Sciences - PNAS, 1997-08, Vol.94 (17), p.9022-9027
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ArticlesPeer ReviewedFull Text
An ensemble of mathematical models showing diauxic growth behaviour
Author / Creator:Kremling, Andreas ; Geiselmann, Johannes ; Ropers, Delphine ; de Jong, Hidde
Publisher:England: BioMed Central Ltd
Journal title:BMC systems biology, 2018-09, Vol.12 (1), p.82-82, Article 82
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ArticlesPeer ReviewedFull Text
Characterization of the Escherichia coli σS core regulon by Chromatin Immunoprecipitation-sequencing (ChIP-seq) analysis
Author / Creator:Peano, Clelia ; Wolf, Johannes ; Demol, Julien ; Rossi, Elio ; Petiti, Luca ; De Bellis, Gianluca ; Geiselmann, Johannes ; Egli, Thomas ; Lacour, Stephan ; Landini, Paolo
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2015-05, Vol.5 (1), Article 10469
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ArticlesPeer ReviewedFull Text
Qualitative simulation of genetic regulatory networks using piecewise-linear models
Author / Creator:de Jong, Hidde ; Gouzé, Jean-Luc ; Hernandez, Céline ; Page, Michel ; Sari, Tewfik ; Geiselmann, Johannes
Publisher:United States: Elsevier Ltd
Journal title:Bulletin of mathematical biology, 2004-03, Vol.66 (2), p.301-340
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ArticlesPeer ReviewedFull Text
Inference of Quantitative Models of Bacterial Promoters from Time-Series Reporter Gene Data: e1004028
Author / Creator:Stefan, Diana ; Pinel, Corinne ; Pinhal, Stéphane ; Cinquemani, Eugenio ; Geiselmann, Johannes ; Jong, Hidde de
Publisher:San Francisco: Public Library of Science
Journal title:PLoS computational biology, 2015-01, Vol.11 (1)
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ArticlesPeer ReviewedFull Text
Long-Term Experimental Evolution in Escherichia coli. XII. DNA Topology as a Key Target of Selection
Author / Creator:Crozat, Estelle ; Philippe, Nadege ; Lenski, Richard E ; Geiselmann, Johannes ; Schneider, Dominique
Publisher:United States: Genetics Soc America
Journal title:Genetics (Austin), 2005-02, Vol.169 (2), p.523-532
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ArticlesPeer ReviewedFull Text
Characterization of the Escherichia coli σ(S) core regulon by Chromatin Immunoprecipitation-sequencing (ChIP-seq) analysis
Author / Creator:Peano, Clelia ; Wolf, Johannes ; Demol, Julien ; Rossi, Elio ; Petiti, Luca ; De Bellis, Gianluca ; Geiselmann, Johannes ; Egli, Thomas ; Lacour, Stephan ; Landini, Paolo
Publisher:England: Nature Publishing Group
Journal title:Scientific reports, 2015-05, Vol.5, p.10469-10469
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ArticlesPeer ReviewedFull Text
Correction: The Carbon Assimilation Network in Escherichia coli Is Densely Connected and Largely Sign-Determined by Directions of Metabolic Fluxes
Author / Creator:Baldazzi, Valentina ; Ropers, Delphine ; Markowicz, Yves ; Kahn, Daniel ; Geiselmann, Johannes ; de Jong, Hidde
Publisher:San Francisco, USA: Public Library of Science
Journal title:PLoS computational biology, 2010-08, Vol.6 (8)
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ArticlesPeer ReviewedFull Text
Correction: The Carbon Assimilation Network in Is Densely Connected and Largely Sign-Determined by Directions of Metabolic Fluxes
Author / Creator:Valentina Baldazzi ; Delphine Ropers ; Yves Markowicz ; Daniel Kahn ; Johannes Geiselmann ; Hidde de Jong
Publisher:Public Library of Science (PLoS)
Journal title:PLoS computational biology, 2010-08, Vol.6 (8)
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ArticlesPeer ReviewedFull Text
The Carbon Assimilation Network in Escherichia coli Is Densely Connected and Largely Sign-Determined by Directions of Metabolic Fluxes: e1000812
Author / Creator:Baldazzi, Valentina ; Ropers, Delphine ; Markowicz, Yves ; Kahn, Daniel ; Geiselmann, Johannes ; Jong, Hidde de
Publisher:San Francisco: Public Library of Science
Journal title:PLoS computational biology, 2010-06, Vol.6 (6)
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ArticlesPeer ReviewedFull Text
Qualitative simulation of the initiation of sporulation in Bacillus subtilis
Author / Creator:de Jong, Hidde ; Geiselmann, Johannes ; Batt, Grégory ; Hernandez, Céline ; Page, Michel
Publisher:United States: Elsevier Ltd
Journal title:Bulletin of mathematical biology, 2004-03, Vol.66 (2), p.261-299
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Showing 1 to 20 of 24 results

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Dynamical Allocation of Cellular Resources as an Optimal Control Problem: Novel Insights into Microbial Growth Strategies

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Single-cell data reveal heterogeneity of investment in ribosomes across a bacterial population

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Shared control of gene expression in bacteria by transcription factors and global physiology of the cell

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A synthetic growth switch based on controlled expression of RNA polymerase

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Inference of Quantitative Models of Bacterial Promoters from Time-Series Reporter Gene Data

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The Carbon Assimilation Network in Escherichia coli Is Densely Connected and Largely Sign-Determined by Directions of Metabolic Fluxes

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Experimental and computational validation of models of fluorescent and luminescent reporter genes in bacteria

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Parallel Changes in Global Protein Profiles During Long-Term Experimental Evolution in Escherichia coli

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The tRNA Function of SsrA Contributes to Controlling Repression of Bacteriophage Mu Prophage

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Structural Kinetics of Transcription Activation at the malT Promoter of Escherichia coli by UV Laser Footprinting

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An ensemble of mathematical models showing diauxic growth behaviour

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Characterization of the Escherichia coli σS core regulon by Chromatin Immunoprecipitation-sequencing (ChIP-seq) analysis

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Qualitative simulation of genetic regulatory networks using piecewise-linear models

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Inference of Quantitative Models of Bacterial Promoters from Time-Series Reporter Gene Data: e1004028

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Long-Term Experimental Evolution in Escherichia coli. XII. DNA Topology as a Key Target of Selection

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Characterization of the Escherichia coli σ(S) core regulon by Chromatin Immunoprecipitation-sequencing (ChIP-seq) analysis

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Correction: The Carbon Assimilation Network in Escherichia coli Is Densely Connected and Largely Sign-Determined by Directions of Metabolic Fluxes

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Correction: The Carbon Assimilation Network in Is Densely Connected and Largely Sign-Determined by Directions of Metabolic Fluxes

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The Carbon Assimilation Network in Escherichia coli Is Densely Connected and Largely Sign-Determined by Directions of Metabolic Fluxes: e1000812

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Qualitative simulation of the initiation of sporulation in Bacillus subtilis

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