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22 results for Gergely+Csaba

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ArticlesPeer ReviewedFull Text
Toward a gold standard for benchmarking gene set enrichment analysis
Author / Creator:Geistlinger, Ludwig ; Csaba, Gergely ; Santarelli, Mara ; Ramos, Marcel ; Schiffer, Lucas ; Turaga, Nitesh ; Law, Charity ; Davis, Sean ; Carey, Vincent ; Morgan, Martin ; Zimmer, Ralf ; Waldron, Levi
Publisher:England: Oxford University Press
Journal title:Briefings in bioinformatics, 2021-01, Vol.22 (1), p.545-556
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miR-103 promotes endothelial maladaptation by targeting lncWDR59
Author / Creator:Natarelli, Lucia ; Geißler, Claudia ; Gergely Csaba ; Wei, Yuanyuan ; Zhu, Mengyu ; Andrea di Francesco ; Hartmann, Petra ; Zimmer, Ralf ; Schober, Andreas
Publisher:London: Nature Publishing Group
Journal title:Nature communications, 2018-07, Vol.9, p.1-15
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ArticlesPeer ReviewedFull Text
Alternative Splicing in Next Generation Sequencing Data of Saccharomyces cerevisiae
Author / Creator:Schreiber, Konrad ; Csaba, Gergely ; Haslbeck, Martin ; Zimmer, Ralf
Publisher:United States: Public Library of Science
Journal title:PloS one, 2015-10, Vol.10 (10), p.e0140487-e0140487
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miRSel: Automated extraction of associations between microRNAs and genes from the biomedical literature
Author / Creator:Naeem, Haroon ; Küffner, Robert ; Csaba, Gergely ; Zimmer, Ralf
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2010-03, Vol.11 (1), p.135-135, Article 135
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ContextMap 2: fast and accurate context-based RNA-seq mapping
Author / Creator:Bonfert, Thomas ; Kirner, Evelyn ; Csaba, Gergely ; Zimmer, Ralf ; Friedel, Caroline C
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2015-04, Vol.16 (1), p.122-122, Article 122
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Variability in knowledge retention of medical students: repeated and recently learned basic science topics
Author / Creator:Csaba, Gergely ; Szabó, István ; Környei, József L. ; Kerényi, Mónika ; Füzesi, Zsuzsanna ; Csathó, Árpád
Publisher:England: BioMed Central Ltd
Journal title:BMC medical education, 2025-04, Vol.25 (1), p.523-11, Article 523
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Evaluating Transcription Factor Activity Changes by Scoring Unexplained Target Genes in Expression Data
Author / Creator:Berchtold, Evi ; Csaba, Gergely ; Zimmer, Ralf
Publisher:United States: Public Library of Science
Journal title:PloS one, 2016-10, Vol.11 (10), p.e0164513-e0164513
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A transcriptional response of Clostridium beijerinckii NRRL B-598 to a butanol shock
Author / Creator:Sedlar, Karel ; Kolek, Jan ; Gruber, Markus ; Jureckova, Katerina ; Branska, Barbora ; Csaba, Gergely ; Vasylkivska, Maryna ; Zimmer, Ralf ; Patakova, Petra ; Provaznik, Ivo
Publisher:England: BioMed Central Ltd
Journal title:Biotechnology for biofuels, 2019-10, Vol.12 (1), p.243-243, Article 243
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Systematic comparison of SCOP and CATH: a new gold standard for protein structure analysis
Author / Creator:Csaba, Gergely ; Birzele, Fabian ; Zimmer, Ralf
Publisher:England: BioMed Central Ltd
Journal title:BMC structural biology, 2009-04, Vol.9 (1), p.23-23, Article 23
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Mining RNA–Seq Data for Infections and Contaminations
Author / Creator:Bonfert, Thomas ; Csaba, Gergely ; Zimmer, Ralf ; Friedel, Caroline C.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2013-09, Vol.8 (9), p.e73071-e73071
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Multiple SARS-CoV-2 Introductions Shaped the Early Outbreak in Central Eastern Europe: Comparing Hungarian Data to a Worldwide Sequence Data-Matrix
Author / Creator:Kemenesi, Gábor ; Zeghbib, Safia ; Somogyi, Balázs A ; Tóth, Gábor Endre ; Bányai, Krisztián ; Solymosi, Norbert ; Szabo, Peter M ; Szabó, István ; Bálint, Ádám ; Urbán, Péter ; Herczeg, Róbert ; Gyenesei, Attila ; Nagy, Ágnes ; Pereszlényi, Csaba István ; Babinszky, Gergely Csaba ; Dudás, Gábor ; Terhes, Gabriella ; Zöldi, Viktor ; Lovas, Róbert ; Tenczer, Szabolcs ; Kornya, László ; Jakab, Ferenc
Publisher:Switzerland: MDPI AG
Journal title:Viruses, 2020-12, Vol.12 (12), p.1401
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Bioconductor’s EnrichmentBrowser: seamless navigation through combined results of set- & network-based enrichment analysis
Author / Creator:Geistlinger, Ludwig ; Csaba, Gergely ; Zimmer, Ralf
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2016-01, Vol.17 (1), p.45-45, Article 45
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Multiple SARS-CoV-2 Introductions Shaped the Early Outbreak in Central Eastern Europe: Comparing Hungarian Data to a Worldwide Sequence Data-Matrix
Author / Creator:István Szabó ; Ádám Bálint ; Krisztián Bányai ; Péter Urbán ; Attila Gyenesei ; Péter Szabó ; Gabriella Terhes ; Csaba István Pereszlényi ; Ágnes Nagy ; Gergely Csaba Babinszky ; Gábor Kemenesi ; Szabolcs Tenczer ; László Kornya ; Gabor Toth ; Róbert Herczeg ; Gábor Dudás ; Ferenc Jakab ; Róbert Lovas ; Viktor Zöldi ; Safia Zeghbib ; Balázs Somogyi ; Norbert Solymosi
Publisher:MDPI AG
Journal title:Viruses, 2020-05, Vol.12, p.1401
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MS-EmpiRe utilizes peptide-level noise distributions for ultra sensitive detection of differentially abundant proteins
Author / Creator:Ammar, Constantin ; Gruber, Markus ; Gergely Csaba ; Zimmer, Ralf
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2019-01
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EmpiReS: Differential Analysis of Gene Expression and Alternative Splicing
Author / Creator:Gergely Csaba ; Berchtold, Evi ; Hadziahmetovic, Armin ; Gruber, Markus ; Ammar, Constantin ; Zimmer, Ralf
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2020-08
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Multi-reference spectral library yields almost complete coverage of heterogeneous LC-MS/MS data sets
Author / Creator:Ammar, Constantin ; Berchtold, Evi ; Gergely Csaba ; Schmidt, Andreas ; Imhof, Axel ; Zimmer, Ralf
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2018-10
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Towards a gold standard for benchmarking gene set enrichment analysis
Author / Creator:Ludwig Geistlinger ; Gergely Csaba ; Santarelli, Mara ; Ramos, Marcel ; Schiffer, Lucas ; Law, Charity W ; Turaga, Nitesh ; Davis, Sean ; Carey, Vincent ; Morgan, Martin ; Zimmer, Ralf ; Waldron, Levi
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2019-06
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ArticlesPeer ReviewedFull Text
A context-based approach to identify the most likely mapping for RNA-seq experiments
Author / Creator:Bonfert, Thomas ; Csaba, Gergely ; Zimmer, Ralf ; Friedel, Caroline C
Publisher:England: BioMed Central
Journal title:BMC bioinformatics, 2012-04, Vol.13 (S6), p.S9-S9, Article S9
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ArticlesPeer ReviewedFull Text
Alternative Splicing in Next Generation Sequencing Data of Saccharomyces cerevisiae: e0140487
Author / Creator:Schreiber, Konrad ; Csaba, Gergely ; Haslbeck, Martin ; Zimmer, Ralf
Journal title:PloS one, 2015-10, Vol.10 (10)
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ArticlesPeer ReviewedFull Text
Mining RNA-Seq Data for Infections and Contaminations: e73071
Author / Creator:Bonfert, Thomas ; Csaba, Gergely ; Zimmer, Ralf ; Friedel, Caroline C
Journal title:PloS one, 2013-09, Vol.8 (9)
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Showing 1 to 20 of 22 results

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Toward a gold standard for benchmarking gene set enrichment analysis

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miR-103 promotes endothelial maladaptation by targeting lncWDR59

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Alternative Splicing in Next Generation Sequencing Data of Saccharomyces cerevisiae

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miRSel: Automated extraction of associations between microRNAs and genes from the biomedical literature

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ContextMap 2: fast and accurate context-based RNA-seq mapping

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Variability in knowledge retention of medical students: repeated and recently learned basic science topics

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Evaluating Transcription Factor Activity Changes by Scoring Unexplained Target Genes in Expression Data

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A transcriptional response of Clostridium beijerinckii NRRL B-598 to a butanol shock

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Systematic comparison of SCOP and CATH: a new gold standard for protein structure analysis

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Mining RNA–Seq Data for Infections and Contaminations

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Multiple SARS-CoV-2 Introductions Shaped the Early Outbreak in Central Eastern Europe: Comparing Hungarian Data to a Worldwide Sequence Data-Matrix

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Bioconductor’s EnrichmentBrowser: seamless navigation through combined results of set- & network-based enrichment analysis

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Multiple SARS-CoV-2 Introductions Shaped the Early Outbreak in Central Eastern Europe: Comparing Hungarian Data to a Worldwide Sequence Data-Matrix

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MS-EmpiRe utilizes peptide-level noise distributions for ultra sensitive detection of differentially abundant proteins

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EmpiReS: Differential Analysis of Gene Expression and Alternative Splicing

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Multi-reference spectral library yields almost complete coverage of heterogeneous LC-MS/MS data sets

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Towards a gold standard for benchmarking gene set enrichment analysis

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A context-based approach to identify the most likely mapping for RNA-seq experiments

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Alternative Splicing in Next Generation Sequencing Data of Saccharomyces cerevisiae: e0140487

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Mining RNA-Seq Data for Infections and Contaminations: e73071

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