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ArticlesPeer ReviewedFull Text
Long-term benefit of Microbiota Transfer Therapy on autism symptoms and gut microbiota
Author / Creator:Kang, Dae-Wook ; Adams, James B. ; Coleman, Devon M. ; Pollard, Elena L. ; Maldonado, Juan ; McDonough-Means, Sharon ; Caporaso, J. Gregory ; Krajmalnik-Brown, Rosa
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2019-04, Vol.9 (1), p.5821-5821, Article 5821
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A meta-analysis of changes in bacterial and archaeal communities with time
Author / Creator:Shade, Ashley ; Gregory Caporaso, J ; Handelsman, Jo ; Knight, Rob ; Fierer, Noah
Publisher:London: Nature Publishing Group UK
Journal title:The ISME Journal, 2013-08, Vol.7 (8), p.1493-1506
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Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin
Author / Creator:Bokulich, Nicholas A. ; Kaehler, Benjamin D. ; Rideout, Jai Ram ; Dillon, Matthew ; Bolyen, Evan ; Knight, Rob ; Huttley, Gavin A. ; Gregory Caporaso, J.
Publisher:England: BioMed Central Ltd
Journal title:Microbiome, 2018-05, Vol.6 (1), p.90-90, Article 90
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Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
Author / Creator:Caporaso, J Gregory ; Lauber, Christian L ; Walters, William A ; Berg-Lyons, Donna ; Huntley, James ; Fierer, Noah ; Owens, Sarah M ; Betley, Jason ; Fraser, Louise ; Bauer, Markus ; Gormley, Niall ; Gilbert, Jack A ; Smith, Geoff ; Knight, Rob
Publisher:London: Nature Publishing Group UK
Journal title:The ISME Journal, 2012-08, Vol.6 (8), p.1621-1624
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Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys
Author / Creator:Walters, William ; Hyde, Embriette R. ; Berg-Lyons, Donna ; Ackermann, Gail ; Humphrey, Greg ; Parada, Alma ; Gilbert, Jack A. ; Jansson, Janet K. ; Caporaso, J. Gregory ; Fuhrman, Jed A. ; Apprill, Amy ; Knight, Rob
Publisher:United States: American Society for Microbiology
Journal title:mSystems, 2016-01, Vol.1 (1)
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Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
Author / Creator:Caporaso, J. Gregory ; Lauber, Christian L ; Walters, William A ; Berg-Lyons, Donna ; Lozupone, Catherine A ; Turnbaugh, Peter J ; Fierer, Noah ; Knight, Rob
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2011-03, Vol.108 (Supplement 1), p.4516-4522
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Examining the global distribution of dominant archaeal populations in soil
Author / Creator:Bates, Scott T ; Berg-Lyons, Donna ; Caporaso, J Gregory ; Walters, William A ; Knight, Rob ; Fierer, Noah
Publisher:London: Nature Publishing Group UK
Journal title:The ISME Journal, 2011-05, Vol.5 (5), p.908-917
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Multi-omics data integration reveals metabolome as the top predictor of the cervicovaginal microenvironment
Author / Creator:Bokulich, Nicholas A. ; Łaniewski, Paweł ; Adamov, Anja ; Chase, Dana M. ; Caporaso, J. Gregory ; Herbst-Kralovetz, Melissa M.
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2022-02, Vol.18 (2), p.e1009876-e1009876
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Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
Author / Creator:Langille, Morgan G I ; Zaneveld, Jesse ; Caporaso, J Gregory ; McDonald, Daniel ; Knights, Dan ; Reyes, Joshua A ; Clemente, Jose C ; Burkepile, Deron E ; Vega Thurber, Rebecca L ; Knight, Rob ; Beiko, Robert G ; Huttenhower, Curtis
Publisher:New York: Nature Publishing Group US
Journal title:Nature biotechnology, 2013-09, Vol.31 (9), p.814-821
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Cross-biome metagenomic analyses of soil microbial communities and their functional attributes
Author / Creator:Fierer, Noah ; Leff, Jonathan W. ; Adams, Byron J. ; Nielsen, Uffe N. ; Bates, Scott Thomas ; Lauber, Christian L. ; Owens, Sarah ; Gilbert, Jack A. ; Wall, Diana H. ; Caporaso, J. Gregory
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2012-12, Vol.109 (52), p.21390-21395
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Cohabiting family members share microbiota with one another and with their dogs
Author / Creator:Song, Se Jin ; Lauber, Christian ; Costello, Elizabeth K ; Lozupone, Catherine A ; Humphrey, Gregory ; Berg-Lyons, Donna ; Caporaso, J Gregory ; Knights, Dan ; Clemente, Jose C ; Nakielny, Sara ; Gordon, Jeffrey I ; Fierer, Noah ; Knight, Rob
Publisher:England: eLife Sciences Publications Ltd
Journal title:eLife, 2013-04, Vol.2, p.e00458-e00458
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ArticlesPeer ReviewedFull Text
Species abundance information improves sequence taxonomy classification accuracy
Author / Creator:Kaehler, Benjamin D. ; Bokulich, Nicholas A. ; McDonald, Daniel ; Knight, Rob ; Caporaso, J. Gregory ; Huttley, Gavin A.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2019-10, Vol.10 (1), p.4643-10, Article 4643
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Human gut microbiome viewed across age and geography
Author / Creator:Yatsunenko, Tanya ; Rey, Federico E. ; Manary, Mark J. ; Trehan, Indi ; Dominguez-Bello, Maria Gloria ; Contreras, Monica ; Magris, Magda ; Hidalgo, Glida ; Baldassano, Robert N. ; Anokhin, Andrey P. ; Heath, Andrew C. ; Warner, Barbara ; Reeder, Jens ; Kuczynski, Justin ; Caporaso, J. Gregory ; Lozupone, Catherine A. ; Lauber, Christian ; Clemente, Jose Carlos ; Knights, Dan ; Knight, Rob ; Gordon, Jeffrey I.
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2012-06, Vol.486 (7402), p.222-227
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Dietary input of microbes and host genetic variation shape among-population differences in stickleback gut microbiota
Author / Creator:Smith, Chris CR ; Snowberg, Lisa K ; Gregory Caporaso, J ; Knight, Rob ; Bolnick, Daniel I
Publisher:London: Nature Publishing Group UK
Journal title:The ISME Journal, 2015-11, Vol.9 (11), p.2515-2526
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ArticlesPeer ReviewedFull Text
Soil bacterial and fungal communities across a pH gradient in an arable soil
Author / Creator:Rousk, Johannes ; Bååth, Erland ; Brookes, Philip C ; Lauber, Christian L ; Lozupone, Catherine ; Caporaso, J Gregory ; Knight, Rob ; Fierer, Noah
Publisher:London: Nature Publishing Group UK
Journal title:The ISME Journal, 2010-10, Vol.4 (10), p.1340-1351
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ArticlesPeer ReviewedFull Text
Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study
Author / Creator:Kang, Dae-Wook ; Adams, James B. ; Gregory, Ann C. ; Borody, Thomas ; Chittick, Lauren ; Fasano, Alessio ; Khoruts, Alexander ; Geis, Elizabeth ; Maldonado, Juan ; McDonough-Means, Sharon ; Pollard, Elena L. ; Roux, Simon ; Sadowsky, Michael J. ; Lipson, Karen Schwarzberg ; Sullivan, Matthew B. ; Caporaso, J. Gregory ; Krajmalnik-Brown, Rosa
Publisher:England: BioMed Central Ltd
Journal title:Microbiome, 2017-01, Vol.5 (1), p.10, Article 10
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Evidence for a persistent microbial seed bank throughout the global ocean
Author / Creator:Gibbons, Sean M. ; Caporaso, J. Gregory ; Pirrung, Meg ; Field, Dawn ; Knight, Rob ; Gilbert, Jack A.
Publisher:Washington, DC: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2013-03, Vol.110 (12), p.4651-4655
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Moving pictures of the human microbiome
Author / Creator:Caporaso, J Gregory ; Lauber, Christian L ; Costello, Elizabeth K ; Berg-Lyons, Donna ; Gonzalez, Antonio ; Stombaugh, Jesse ; Knights, Dan ; Gajer, Pawel ; Ravel, Jacques ; Fierer, Noah ; Gordon, Jeffrey I ; Knight, Rob
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology (Online Edition), 2011-05, Vol.12 (5), p.R50-R50, Article R50
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Defining seasonal marine microbial community dynamics
Author / Creator:Gilbert, Jack A ; Steele, Joshua A ; Caporaso, J Gregory ; Steinbrück, Lars ; Reeder, Jens ; Temperton, Ben ; Huse, Susan ; McHardy, Alice C ; Knight, Rob ; Joint, Ian ; Somerfield, Paul ; Fuhrman, Jed A ; Field, Dawn
Publisher:London: Nature Publishing Group UK
Journal title:Nature reviews. Microbiology, 2012-02, Vol.6 (2), p.298-308
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Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys
Author / Creator:Werner, Jeffrey J ; Koren, Omry ; Hugenholtz, Philip ; DeSantis, Todd Z ; Walters, William A ; Caporaso, J Gregory ; Angenent, Largus T ; Knight, Rob ; Ley, Ruth E
Publisher:London: Nature Publishing Group UK
Journal title:The ISME Journal, 2012-01, Vol.6 (1), p.94-103
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Showing 1 to 20 of 124 results

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Long-term benefit of Microbiota Transfer Therapy on autism symptoms and gut microbiota

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A meta-analysis of changes in bacterial and archaeal communities with time

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Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

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Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

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Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys

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Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

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Examining the global distribution of dominant archaeal populations in soil

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Multi-omics data integration reveals metabolome as the top predictor of the cervicovaginal microenvironment

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Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

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Cross-biome metagenomic analyses of soil microbial communities and their functional attributes

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Cohabiting family members share microbiota with one another and with their dogs

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Species abundance information improves sequence taxonomy classification accuracy

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Human gut microbiome viewed across age and geography

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Dietary input of microbes and host genetic variation shape among-population differences in stickleback gut microbiota

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Soil bacterial and fungal communities across a pH gradient in an arable soil

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Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study

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Evidence for a persistent microbial seed bank throughout the global ocean

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Moving pictures of the human microbiome

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Defining seasonal marine microbial community dynamics

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Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys

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