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ArticlesPeer ReviewedFull Text
Accurate Detection of Convergent Amino-Acid Evolution with PCOC
Author / Creator:Rey, Carine ; Guéguen, Laurent ; Sémon, Marie ; Bastien Boussau
Publisher:Oxford: Oxford University Press
Journal title:Molecular biology and evolution, 2018-09, Vol.35 (9), p.2296-2306
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Comparative transcriptomics in serial organs uncovers early and pan-organ developmental changes associated with organ-specific morphological adaptation
Author / Creator:Sémon, Marie ; Mouginot, Marion ; Peltier, Manon ; Corneloup, Claudine ; Veber, Philippe ; Guéguen, Laurent ; Pantalacci, Sophie
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2025-01, Vol.16 (1), p.768-17, Article 768
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GC-biased gene conversion conceals the prediction of the nearly neutral theory in avian genomes
Author / Creator:Bolívar, Paulina ; Guéguen, Laurent ; Duret, Laurent ; Ellegren, Hans ; Mugal, Carina F.
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2019-01, Vol.20 (1), p.5-5, Article 5
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ArticlesPeer ReviewedFull Text
Efficient Gene Tree Correction Guided by Genome Evolution
Author / Creator:Noutahi, Emmanuel ; Semeria, Magali ; Lafond, Manuel ; Seguin, Jonathan ; Boussau, Bastien ; Guéguen, Laurent ; El-Mabrouk, Nadia ; Tannier, Eric
Publisher:United States: Public Library of Science
Journal title:PloS one, 2016-08, Vol.11 (8), p.e0159559-e0159559
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ArticlesPeer ReviewedFull Text
Detecting adaptive convergent amino acid evolution
Author / Creator:Rey, Carine ; Lanore, Vincent ; Veber, Philippe ; Guéguen, Laurent ; Lartillot, Nicolas ; Sémon, Marie ; Boussau, Bastien
Publisher:England: Royal Society
Journal title:Philosophical transactions of the Royal Society of London. Series B. Biological sciences, 2019-07, Vol.374 (1777), p.1-11
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ArticlesPeer ReviewedFull Text
A Codon Model for Associating Phenotypic Traits with Altered Selective Patterns of Sequence Evolution
Author / Creator:Halab, Keren ; Karin, Eli Levy ; Guéguen, Laurent ; Mayrose, Itay
Publisher:England: Oxford University Press
Journal title:Systematic biology, 2021-05, Vol.70 (3), p.608-622
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ArticlesPeer ReviewedFull Text
Moments of genome evolution by Double Cut-and-Join
Author / Creator:Biller, Priscila ; Guéguen, Laurent ; Tannier, Eric
Publisher:England: BioMed Central
Journal title:BMC bioinformatics, 2015-10, Vol.16 (S14), p.S7-S7, Article S7
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ArticlesPeer ReviewedFull Text
Accounting for horizontal gene transfers explains conflicting hypotheses regarding the position of aquificales in the phylogeny of Bacteria
Author / Creator:Boussau, Bastien ; Guéguen, Laurent ; Gouy, Manolo
Publisher:England: BioMed Central Ltd
Journal title:BMC evolutionary biology, 2008-10, Vol.8 (1), p.272-272
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ArticlesPeer ReviewedFull Text
Life History Traits Impact the Nuclear Rate of Substitution but Not the Mitochondrial Rate in Isopods
Author / Creator:Saclier, Nathanaëlle ; François, Clémentine M ; Konecny-Dupré, Lara ; Lartillot, Nicolas ; Guéguen, Laurent ; Duret, Laurent ; Malard, Florian ; Douady, Christophe J ; Lefébure, Tristan
Publisher:Oxford: Oxford University Press
Journal title:Molecular biology and evolution, 2018-12, Vol.35 (12), p.2900-2912
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Accurate Estimation of Substitution Rates with Neighbor-Dependent Models in a Phylogenetic Context
Author / Creator:Bérard, Jean ; Guéguen, Laurent
Publisher:England: Oxford University Press
Journal title:Systematic biology, 2012-05, Vol.61 (3), p.510-521
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ArticlesPeer ReviewedFull Text
Transcriptomic signatures shaped by cell proportions shed light on comparative developmental biology
Author / Creator:Pantalacci, Sophie ; Guéguen, Laurent ; Petit, Coraline ; Lambert, Anne ; Peterkovà, Renata ; Sémon, Marie
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2017-02, Vol.18 (1), p.29-29, Article 29
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ArticlesPeer ReviewedFull Text
Life History Traits Impact the Nuclear Rate of Substitution but Not the Mitochondrial Rate in Isopods
Author / Creator:Saclier, Nathanaëlle ; François, Clémentine M ; Konecny-Dupré, Lara ; Lartillot, Nicolas ; Guéguen, Laurent ; Duret, Laurent ; Malard, Florian ; Douady, Christophe J ; Lefébure, Tristan
Publisher:Oxford: Oxford University Press
Journal title:Molecular biology and evolution, 2019-03, Vol.36 (3), p.641
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ArticlesPeer ReviewedFull Text
Unbiased Estimate of Synonymous and Nonsynonymous Substitution Rates with Nonstationary Base Composition
Author / Creator:Guéguen, Laurent ; Duret, Laurent
Publisher:Oxford: Oxford University Press
Journal title:Molecular biology and evolution, 2018-03, Vol.35 (3), p.734-742
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ArticlesPeer ReviewedFull Text
A Mixture Model and a Hidden Markov Model to Simultaneously Detect Recombination Breakpoints and Reconstruct Phylogenies
Author / Creator:Boussau, Bastien ; Gueguen, Laurent ; Gouy, Manolo
Publisher:London, England: SAGE Publishing
Journal title:Evolutionary bioinformatics online, 2009-01, Vol.2009 (5), p.67-79
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ArticlesPeer ReviewedFull Text
UV-Targeted Dinucleotides Are Not Depleted in Light-Exposed Prokaryotic Genomes
Author / Creator:Palmeira, Leonor ; Guéguen, Laurent ; Lobry, Jean R
Publisher:Oxford: Oxford University Press
Journal title:Molecular biology and evolution, 2006-11, Vol.23 (11), p.2214-2219
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ArticlesPeer ReviewedFull Text
SAMD9L acts as an antiviral factor against HIV-1 and primate lentiviruses by restricting viral and cellular translation
Author / Creator:Legrand, Alexandre ; Dahoui, Clara ; De La Myre Mory, Clément ; Noy, Kodie ; Guiguettaz, Laura ; Versapuech, Margaux ; Loyer, Clara ; Pillon, Margaux ; Wcislo, Mégane ; Guéguen, Laurent ; Berlioz-Torrent, Clarisse ; Cimarelli, Andrea ; Mateo, Mathieu ; Fiorini, Francesca ; Ricci, Emiliano P. ; Etienne, Lucie
Publisher:United States: Public Library of Science
Journal title:PLoS biology, 2024-07, Vol.22 (7), p.e3002696
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ArticlesPeer ReviewedFull Text
Bio++: Efficient Extensible Libraries and Tools for Computational Molecular Evolution
Author / Creator:Guéguen, Laurent ; Gaillard, Sylvain ; Bastien Boussau ; Gouy, Manolo ; Groussin, Mathieu ; Rochette, Nicolas C ; Bigot, Thomas ; Fournier, David ; Pouyet, Fanny ; Cahais, Vincent ; Bernard, Aurélien ; Scornavacca, Céline ; Nabholz, Benoît ; Haudry, Annabelle ; Dachary, Loïc ; Galtier, Nicolas ; Belkhir, Khalid ; Dutheil, Julien Y
Publisher:Oxford: Oxford University Press
Journal title:Molecular biology and evolution, 2013-08, Vol.30 (8), p.1745-1750
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ArticlesPeer ReviewedFull Text
Probabilistic modeling of the evolution of gene synteny within reconciled phylogenies
Author / Creator:Semeria, Magali ; Tannier, Eric ; Guéguen, Laurent
Publisher:England: BioMed Central
Journal title:BMC bioinformatics, 2015-10, Vol.16 (S14), p.S5-S5, Article S5
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ArticlesPeer ReviewedFull Text
Horizontal Gene Transfer Regulation in Bacteria as a “Spandrel” of DNA Repair Mechanisms
Author / Creator:Fall, Saliou ; Mercier, Anne ; Bertolla, Franck ; Calteau, Alexandra ; Gueguen, Laurent ; Perrière, Guy ; Vogel, Timothy M. ; Simonet, Pascal
Publisher:United States: Public Library of Science
Journal title:PloS one, 2007-10, Vol.2 (10), p.e1055-e1055
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A Mixture Model and a Hidden Markov Model to Simultaneously Detect Recombination Breakpoints and Reconstruct Phylogenies A Mixture Model and a Hidden Markov Model to Simultaneously Detect Recombinatio...
Author / Creator:Bastien Boussau ; Laurent Guéguen ; Manolo Gouy
Publisher:SAGE Publishing
Journal title:Evolutionary bioinformatics online, 2009-06, Vol.2009 (5), p.67-79
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Showing 1 to 20 of 34 results

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Accurate Detection of Convergent Amino-Acid Evolution with PCOC

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Comparative transcriptomics in serial organs uncovers early and pan-organ developmental changes associated with organ-specific morphological adaptation

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GC-biased gene conversion conceals the prediction of the nearly neutral theory in avian genomes

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Efficient Gene Tree Correction Guided by Genome Evolution

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Detecting adaptive convergent amino acid evolution

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A Codon Model for Associating Phenotypic Traits with Altered Selective Patterns of Sequence Evolution

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Moments of genome evolution by Double Cut-and-Join

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Accounting for horizontal gene transfers explains conflicting hypotheses regarding the position of aquificales in the phylogeny of Bacteria

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Life History Traits Impact the Nuclear Rate of Substitution but Not the Mitochondrial Rate in Isopods

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Accurate Estimation of Substitution Rates with Neighbor-Dependent Models in a Phylogenetic Context

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Transcriptomic signatures shaped by cell proportions shed light on comparative developmental biology

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Life History Traits Impact the Nuclear Rate of Substitution but Not the Mitochondrial Rate in Isopods

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Unbiased Estimate of Synonymous and Nonsynonymous Substitution Rates with Nonstationary Base Composition

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A Mixture Model and a Hidden Markov Model to Simultaneously Detect Recombination Breakpoints and Reconstruct Phylogenies

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UV-Targeted Dinucleotides Are Not Depleted in Light-Exposed Prokaryotic Genomes

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SAMD9L acts as an antiviral factor against HIV-1 and primate lentiviruses by restricting viral and cellular translation

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Bio++: Efficient Extensible Libraries and Tools for Computational Molecular Evolution

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Probabilistic modeling of the evolution of gene synteny within reconciled phylogenies

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Horizontal Gene Transfer Regulation in Bacteria as a “Spandrel” of DNA Repair Mechanisms

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A Mixture Model and a Hidden Markov Model to Simultaneously Detect Recombination Breakpoints and Reconstruct Phylogenies A Mixture Model and a Hidden Markov Model to Simultaneously Detect Recombinatio...

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