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ArticlesPeer ReviewedFull Text
Mouse genomic variation and its effect on phenotypes and gene regulation
Author / Creator:Keane, Thomas M. ; Goodstadt, Leo ; Danecek, Petr ; White, Michael A. ; Wong, Kim ; Yalcin, Binnaz ; Heger, Andreas ; Agam, Avigail ; Slater, Guy ; Goodson, Martin ; Furlotte, Nicholas A. ; Eskin, Eleazar ; Nellåker, Christoffer ; Whitley, Helen ; Cleak, James ; Janowitz, Deborah ; Hernandez-Pliego, Polinka ; Edwards, Andrew ; Belgard, T. Grant ; Oliver, Peter L. ; McIntyre, Rebecca E. ; Bhomra, Amarjit ; Nicod, Jérôme ; Gan, Xiangchao ; Yuan, Wei ; van der Weyden, Louise ; Steward, Charles A. ; Bala, Sendu ; Stalker, Jim ; Mott, Richard ; Durbin, Richard ; Jackson, Ian J. ; Czechanski, Anne ; Guerra-Assunção, José Afonso ; Donahue, Leah Rae ; Reinholdt, Laura G. ; Payseur, Bret A. ; Ponting, Chris P. ; Birney, Ewan ; Flint, Jonathan ; Adams, David J.
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2011-09, Vol.477 (7364), p.289-294
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A robust SNP barcode for typing Mycobacterium tuberculosis complex strains
Author / Creator:Coll, Francesc ; McNerney, Ruth ; Guerra-Assunção, José Afonso ; Glynn, Judith R. ; Perdigão, João ; Viveiros, Miguel ; Portugal, Isabel ; Pain, Arnab ; Martin, Nigel ; Clark, Taane G.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2014-09, Vol.5 (1), p.4812, Article 4812
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Extent, Causes, and Consequences of Small RNA Expression Variation in Human Adipose Tissue
Author / Creator:Parts, Leopold ; Hedman, Åsa K. ; Keildson, Sarah ; Knights, Andrew J. ; Abreu-Goodger, Cei ; van de Bunt, Martijn ; Guerra-Assunção, José Afonso ; Bartonicek, Nenad ; van Dongen, Stijn ; Mägi, Reedik ; Nisbet, James ; Barrett, Amy ; Rantalainen, Mattias ; Nica, Alexandra C. ; Quail, Michael A. ; Small, Kerrin S. ; Glass, Daniel ; Enright, Anton J. ; Winn, John ; Deloukas, Panos ; Dermitzakis, Emmanouil T. ; McCarthy, Mark I. ; Spector, Timothy D. ; Durbin, Richard ; Lindgren, Cecilia M.
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2012-05, Vol.8 (5), p.e1002704
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Recurrent mTORC1-activating RRAGC mutations in follicular lymphoma
Author / Creator:Okosun, Jessica ; Wolfson, Rachel L ; Wang, Jun ; Araf, Shamzah ; Wilkins, Lucy ; Castellano, Brian M ; Escudero-Ibarz, Leire ; Al Seraihi, Ahad Fahad ; Richter, Julia ; Bernhart, Stephan H ; Efeyan, Alejo ; Iqbal, Sameena ; Matthews, Janet ; Clear, Andrew ; Guerra-Assunção, José Afonso ; Bödör, Csaba ; Quentmeier, Hilmar ; Mansbridge, Christopher ; Johnson, Peter ; Davies, Andrew ; Strefford, Jonathan C ; Packham, Graham ; Barrans, Sharon ; Jack, Andrew ; Du, Ming-Qing ; Calaminici, Maria ; Lister, T Andrew ; Auer, Rebecca ; Montoto, Silvia ; Gribben, John G ; Siebert, Reiner ; Chelala, Claude ; Zoncu, Roberto ; Sabatini, David M ; Fitzgibbon, Jude
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2016-02, Vol.48 (2), p.183-188
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Cathepsin-L Can Resist Lysis by Human Serum in Trypanosoma brucei brucei
Author / Creator:Alsford, Sam ; Currier, Rachel B. ; Guerra-Assunção, José Afonso ; Clark, Taane G. ; Horn, David
Publisher:United States: Public Library of Science
Journal title:PLoS pathogens, 2014-05, Vol.10 (5), p.e1004130
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The Personal Genome Project-UK, an open access resource of human multi-omics data
Author / Creator:Chervova, Olga ; Conde, Lucia ; José Afonso Guerra-Assunção ; Moghul, Ismail ; Webster, Amy P ; Berner, Alison ; Elizabeth Larose Cadieux ; Tian, Yuan ; Voloshin, Vitaly ; Jesus, Tiago F ; Hamoudi, Rifat ; Herrero, Javier ; Beck, Stephan
Publisher:London: Nature Publishing Group
Journal title:Scientific data, 2019-10, Vol.6 (1), p.1-10
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Genomic investigations of unexplained acute hepatitis in children
Author / Creator:Morfopoulou, Sofia ; Buddle, Sarah ; Torres Montaguth, Oscar Enrique ; Atkinson, Laura ; Guerra-Assunção, José Afonso ; Moradi Marjaneh, Mahdi ; Zennezini Chiozzi, Riccardo ; Storey, Nathaniel ; Campos, Luis ; Hutchinson, J. Ciaran ; Counsell, John R. ; Pollara, Gabriele ; Roy, Sunando ; Venturini, Cristina ; Antinao Diaz, Juan F. ; Siam, Ala’a ; Tappouni, Luke J. ; Asgarian, Zeinab ; Ng, Joanne ; Hanlon, Killian S. ; Lennon, Alexander ; McArdle, Andrew ; Czap, Agata ; Rosenheim, Joshua ; Andrade, Catarina ; Anderson, Glenn ; Lee, Jack C. D. ; Williams, Rachel ; Williams, Charlotte A. ; Tutill, Helena ; Bayzid, Nadua ; Martin Bernal, Luz Marina ; Macpherson, Hannah ; Montgomery, Kylie-Ann ; Moore, Catherine ; Templeton, Kate ; Neill, Claire ; Holden, Matt ; Gunson, Rory ; Shepherd, Samantha J. ; Shah, Priyen ; Cooray, Samantha ; Voice, Marie ; Steele, Michael ; Fink, Colin ; Whittaker, Thomas E. ; Santilli, Giorgia ; Gissen, Paul ; Kaufer, Benedikt B. ; Reich, Jana ; Andreani, Julien ; Simmonds, Peter ; Alrabiah, Dimah K. ; Castellano, Sergi ; Chikowore, Primrose ; Odam, Miranda ; Rampling, Tommy ; Houlihan, Catherine ; Hoschler, Katja ; Talts, Tiina ; Celma, Cristina ; Gonzalez, Suam ; Gallagher, Eileen ; Simmons, Ruth ; Watson, Conall ; Mandal, Sema ; Zambon, Maria ; Chand, Meera ; Hatcher, James ; De, Surjo ; Baillie, Kenneth ; Semple, Malcolm Gracie ; Martin, Joanne ; Ushiro-Lumb, Ines ; Noursadeghi, Mahdad ; Deheragoda, Maesha ; Hadzic, Nedim ; Grammatikopoulos, Tassos ; Brown, Rachel ; Kelgeri, Chayarani ; Thalassinos, Konstantinos ; Waddington, Simon N. ; Jacques, Thomas S. ; Thomson, Emma ; Levin, Michael ; Brown, Julianne R. ; Breuer, Judith
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2023-05, Vol.617 (7961), p.564-573
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Protective Effect of Nasal Colonisation with ∆cps/piaA and ∆cps/proABCStreptococcus pneumoniae Strains against Recolonisation and Invasive Infection
Author / Creator:Ramos-Sevillano, Elisa ; Ercoli, Giuseppe ; Guerra-Assunção, José Afonso ; Felgner, Philip ; Ramiro de Assis, Rafael ; Nakajima, Rie ; Goldblatt, David ; Tetteh, Kevin Kweku Adjei ; Heyderman, Robert Simon ; Gordon, Stephen Brian ; Ferreria, Daniela Mulari ; Brown, Jeremy Stuart
Publisher:Basel: MDPI AG
Journal title:Vaccines (Basel), 2021-03, Vol.9 (3), p.261
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Recurrence due to Relapse or Reinfection With Mycobacterium tuberculosis: A Whole-Genome Sequencing Approach in a Large, Population-Based Cohort With a High HIV Infection Prevalence and Active Follow-...
Author / Creator:Guerra-Assunção, José Afonso ; Houben, Rein M. G. J. ; Crampin, Amelia C. ; Mzembe, Themba ; Mallard, Kim ; Coll, Francesc ; Khan, Palwasha ; Banda, Louis ; Chiwaya, Arthur ; Pereira, Rui P. A. ; McNerney, Ruth ; Harris, David ; Parkhill, Julian ; Clark, Taane G. ; Glynn, Judith R.
Publisher:United States: Oxford University Press
Journal title:The Journal of infectious diseases, 2015-04, Vol.211 (7), p.1154-1163
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Identifying mixed Mycobacterium tuberculosis infections from whole genome sequence data
Author / Creator:Sobkowiak, Benjamin ; Glynn, Judith R. ; Houben, Rein M. G. J. ; Mallard, Kim ; Phelan, Jody E. ; Guerra-Assunção, José Afonso ; Banda, Louis ; Mzembe, Themba ; Viveiros, Miguel ; McNerney, Ruth ; Parkhill, Julian ; Crampin, Amelia C. ; Clark, Taane G.
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2018-08, Vol.19 (1), p.613-15, Article 613
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Whole Genome Sequencing Shows a Low Proportion of Tuberculosis Disease Is Attributable to Known Close Contacts in Rural Malawi
Author / Creator:Glynn, Judith R. ; Guerra-Assunção, José Afonso ; Houben, Rein M. G. J. ; Sichali, Lifted ; Mzembe, Themba ; Mwaungulu, Lorrain K. ; Mwaungulu, J. Nimrod ; McNerney, Ruth ; Khan, Palwasha ; Parkhill, Julian ; Crampin, Amelia C. ; Clark, Taane G.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2015-07, Vol.10 (7), p.e0132840-e0132840
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Identification of Recurrent Mutations in the microRNA-Binding Sites of B-Cell Lymphoma-Associated Genes in Follicular Lymphoma
Author / Creator:Larrea, Erika ; Fernandez-Mercado, Marta ; Guerra-Assunção, José Afonso ; Wang, Jun ; Goicoechea, Ibai ; Gaafar, Ayman ; Ceberio, Izaskun ; Lobo, Carmen ; Okosun, Jessica ; Enright, Anton J. ; Fitzgibbon, Jude ; Lawrie, Charles H.
Publisher:Switzerland: MDPI AG
Journal title:International journal of molecular sciences, 2020-11, Vol.21 (22), p.8795
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GenomeChronicler: The Personal Genome Project UK Genomic Report Generator Pipeline
Author / Creator:José Afonso Guerra-Assunção ; Conde, Lucia ; Moghul, Ismail ; Webster, Amy P ; Ecker, Simone ; Chervova, Olga ; Chatzipantsiou, Christina ; Prieto, Pablo P ; Beck, Stephan ; Herrero, Javier
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2020-09
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HIV-1 Vpr drives a tissue residency-like phenotype during selective infection of resting memory T cells
Author / Creator:Ann-Kathrin Reuschl ; Shivkumar, Maitreyi ; Mesner, Dejan ; Pallett, Laura J ; José Afonso Guerra-Assunção ; Madansein, Rajhmun ; Dullabh, Kaylesh J ; Sigal, Alex ; Thornhill, John P ; Herrera, Carolina ; Fidler, Sarah ; Noursadeghi, Mahdad ; Maini, Mala K ; Jolly, Clare
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2021-01
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Rapid determination of anti-tuberculosis drug resistance from whole-genome sequences
Author / Creator:Coll, Francesc ; McNerney, Ruth ; Preston, Mark D ; Guerra-Assunção, José Afonso ; Warry, Andrew ; Hill-Cawthorne, Grant ; Mallard, Kim ; Nair, Mridul ; Miranda, Anabela ; Alves, Adriana ; Perdigão, João ; Viveiros, Miguel ; Portugal, Isabel ; Hasan, Zahra ; Hasan, Rumina ; Glynn, Judith R ; Martin, Nigel ; Pain, Arnab ; Clark, Taane G
Publisher:England: BioMed Central Ltd
Journal title:Genome medicine, 2015-05, Vol.7 (1), p.51, Article 51
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SARS-CoV-2 lineage B.1.1.7 is associated with greater disease severity among hospitalised women but not men: multicentre cohort study
Author / Creator:Stirrup, Oliver ; Boshier, Florencia ; Venturini, Cristina ; Guerra-Assunção, José Afonso ; Alcolea-Medina, Adela ; Beckett, Angela ; Charalampous, Themoula ; da Silva Filipe, Ana ; Glaysher, Sharon ; Khan, Tabassum ; Kulasegaran Shylini, Raghavendran ; Monahan, Irene ; Mollett, Guy ; Pelosi, Emanuela ; Randell, Paul ; Roy, Sunando ; Taylor, Joshua ; Weller, Sophie ; Wade, Phillip ; Williams, Rachel ; Copas, Andrew ; Cutino-Moguel, Maria-Teresa ; Freemantle, Nick ; Hayward, Andrew C ; Holmes, Alison ; Hughes, Joseph ; Mahungu, Tabitha ; Nebbia, Gaia ; Partridge, David ; Pope, Cassie ; Price, James ; Robson, Samuel ; Saeed, Kordo ; de Silva, Thushan ; Snell, Luke ; Thomson, Emma ; Witney, Adam A ; Breuer, Judith ; Blackstone, James ; Hockey, Leanne ; Marley, Georgia ; Harrington, David ; Riddell, Anna ; Peters, Christine ; Patel, Bindi ; Williams, Tom G S ; Batra, Rahul ; Madona, Pinglawathee ; Cox, Alison ; Hart, Jennifer ; Haque, Tanzina ; Irish, Dianne ; Pang, Juanita ; Williams, Charlotte ; Tutill, Helena ; Bayzid, Nadua ; Cotic, Marius ; Green, Luke ; Lindsey, Benjamin ; State, Amy ; Cope, Alison ; Johnson, Katie ; Angyal, Adrienn ; Zhang, Peijun ; Whiteley, Max ; Ramalho, Marta Gallis ; Christou, Stella ; Louka, Stavroula ; Hornsby, Hailey ; Foulkes, Benjamin ; Wolverson, Paige ; Heffer, Joe ; Smith, Nikki ; Goudarzi, Salman ; Fearn, Chris ; Cook, Kate ; Loveson, Katie ; Elliott, Scott ; Samaraweera, Buddhini ; Silveira, Siona ; Aplin, Stephen ; Jeremiah, Sarah ; Umpleby, Helen ; Wheeler, Helen ; Harvey, Matthew ; Prieto, Jacqui ; Laing, Kenneth ; Tan, Ngee Keong ; Pereira, Claudia Cardoso ; Nastouli, Eleni ; Houlihan, Catherine F ; Frampton, Dan ; Rampling, Tommy ; Heaney, Judith ; Shin, Gee Yen ; Spyer, Moira ; Bergstrom, Malin ; Sanchez, Emilie ; Paraskevopoulou, Stavroula M ; Margaritis, Marios
Publisher:England: British Thoracic Society
Journal title:BMJ open respiratory research, 2021-09, Vol.8 (1), p.e001029
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Cathepsin-L Can Resist Lysis by Human Serum in Trypanosoma brucei brucei: e1004130
Author / Creator:Alsford, Sam ; Currier, Rachel B ; Guerra-Assunção, José Afonso ; Clark, Taane G ; Horn, David
Publisher:San Francisco: Public Library of Science
Journal title:PLoS pathogens, 2014-05, Vol.10 (5)
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The Personal Genome Project-UK: an open access resource of human multi-omics data
Author / Creator:Chervova, Olga ; Conde, Lucia ; José Afonso Guerra-Assunção ; Moghul, Ismail ; Webster, Amy Philomena ; Berner, Alison ; Elizabeth Larose Cadieux ; Tian, Yuan ; Voloshin, Vitaly ; Hamoudi, Rifat Akram ; Herrero, Javier ; Beck, Stephan
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2019-03
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Protective Effect of Nasal Colonisation with ∆cps/piaA and ∆cps/proABC Streptococcus pneumoniae Strains against Recolonisation and Invasive Infection
Author / Creator:Ramos-Sevillano, Elisa ; Ercoli, Giuseppe ; Guerra-Assunção, José Afonso ; Felgner, Philip ; Ramiro de Assis, Rafael ; Nakajima, Rie ; Goldblatt, David ; Tetteh, Kevin Kweku Adjei ; Heyderman, Robert Simon ; Gordon, Stephen Brian ; Ferreria, Daniela Mulari ; Brown, Jeremy Stuart
Publisher:Switzerland: MDPI
Journal title:Vaccines (Basel), 2021-03, Vol.9 (3)
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Persistent SARS-CoV-2 PCR Positivity Despite Anti-viral Treatment in Immunodeficient Patients
Author / Creator:Chan, Michele ; Linn, Me Me Nay ; O’Hagan, Thomas ; Guerra-Assunção, José Afonso ; Lackenby, Angie ; Workman, Sarita ; Dacre, Anna ; Burns, Siobhan O ; Breuer, Judith ; Hart, Jennifer ; Tadros, Susan ; Lowe, David M
Publisher:New York: Springer Nature B.V
Journal title:Journal of clinical immunology, 2023-08, Vol.43 (6), p.1083-1092
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Showing 1 to 20 of 42 results

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Mouse genomic variation and its effect on phenotypes and gene regulation

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A robust SNP barcode for typing Mycobacterium tuberculosis complex strains

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Extent, Causes, and Consequences of Small RNA Expression Variation in Human Adipose Tissue

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Recurrent mTORC1-activating RRAGC mutations in follicular lymphoma

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Cathepsin-L Can Resist Lysis by Human Serum in Trypanosoma brucei brucei

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The Personal Genome Project-UK, an open access resource of human multi-omics data

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Genomic investigations of unexplained acute hepatitis in children

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Protective Effect of Nasal Colonisation with ∆cps/piaA and ∆cps/proABCStreptococcus pneumoniae Strains against Recolonisation and Invasive Infection

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Recurrence due to Relapse or Reinfection With Mycobacterium tuberculosis: A Whole-Genome Sequencing Approach in a Large, Population-Based Cohort With a High HIV Infection Prevalence and Active Follow-...

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Identifying mixed Mycobacterium tuberculosis infections from whole genome sequence data

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Whole Genome Sequencing Shows a Low Proportion of Tuberculosis Disease Is Attributable to Known Close Contacts in Rural Malawi

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Identification of Recurrent Mutations in the microRNA-Binding Sites of B-Cell Lymphoma-Associated Genes in Follicular Lymphoma

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GenomeChronicler: The Personal Genome Project UK Genomic Report Generator Pipeline

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HIV-1 Vpr drives a tissue residency-like phenotype during selective infection of resting memory T cells

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Rapid determination of anti-tuberculosis drug resistance from whole-genome sequences

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SARS-CoV-2 lineage B.1.1.7 is associated with greater disease severity among hospitalised women but not men: multicentre cohort study

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Cathepsin-L Can Resist Lysis by Human Serum in Trypanosoma brucei brucei: e1004130

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The Personal Genome Project-UK: an open access resource of human multi-omics data

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Protective Effect of Nasal Colonisation with ∆cps/piaA and ∆cps/proABC Streptococcus pneumoniae Strains against Recolonisation and Invasive Infection

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Persistent SARS-CoV-2 PCR Positivity Despite Anti-viral Treatment in Immunodeficient Patients

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