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ArticlesPeer ReviewedFull Text
A generalized approach to predicting protein-protein interactions between virus and host
Author / Creator:Zhou, Xiang ; Park, Byungkyu ; Choi, Daesik ; Han, Kyungsook
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2018-08, Vol.19 (S6), p.568-568, Article 568
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ArticlesPeer ReviewedFull Text
Prediction of protein-protein interactions between viruses and human by an SVM model
Author / Creator:Cui, Guangyu ; Fang, Chao ; Han, Kyungsook
Publisher:England: BioMed Central
Journal title:BMC bioinformatics, 2012-05, Vol.13 (S7), p.S5-S5, Article S5
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ArticlesPeer ReviewedFull Text
DLoopCaller: A deep learning approach for predicting genome-wide chromatin loops by integrating accessible chromatin landscapes
Author / Creator:Wang, Siguo ; Zhang, Qinhu ; He, Ying ; Cui, Zhen ; Guo, Zhenghao ; Han, Kyungsook ; Huang, De-Shuang
Publisher:San Francisco: Public Library of Science
Journal title:PLoS computational biology, 2022-10, Vol.18 (10), p.e1010572-e1010572
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ArticlesPeer ReviewedFull Text
A generative model for constructing nucleic acid sequences binding to a protein
Author / Creator:Im, Jinho ; Park, Byungkyu ; Han, Kyungsook
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2019-12, Vol.20 (S13), p.967-967, Article 967
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ArticlesPeer ReviewedFull Text
Predicting lymph node metastasis and prognosis of individual cancer patients based on miRNA-mediated RNA interactions
Author / Creator:Ren, Shulei ; Lee, Wook ; Han, Kyungsook
Publisher:England: BioMed Central
Journal title:BMC medical genomics, 2022-04, Vol.15 (S1), p.87-87, Article 87
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ArticlesPeer ReviewedFull Text
Constructing lncRNA-miRNA-mRNA networks specific to individual cancer patients and finding prognostic biomarkers
Author / Creator:Ren, Shulei ; Lee, Wook ; Park, Byungkyu ; Han, Kyungsook
Publisher:England: BioMed Central Ltd
Journal title:BMC genetics, 2024-07, Vol.25 (S1), p.67-67, Article 67
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ArticlesPeer ReviewedFull Text
Finding prognostic gene pairs for cancer from patient-specific gene networks
Author / Creator:Park, Byungkyu ; Lee, Wook ; Park, Inhee ; Han, Kyungsook
Publisher:England: BioMed Central Ltd
Journal title:BMC medical genomics, 2019-12, Vol.12 (S8), p.179-179, Article 179
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ArticlesPeer ReviewedFull Text
Constructing cancer patient-specific and group-specific gene networks with multi-omics data
Author / Creator:Lee, Wook ; Huang, De-Shuang ; Han, Kyungsook
Publisher:England: BioMed Central Ltd
Journal title:BMC medical genomics, 2020-08, Vol.13 (S6), p.81-81, Article 81
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ArticlesPeer ReviewedFull Text
Comparative Analysis of Gene Correlation Networks of Breast Cancer Patients Based on Mutations in TP53
Author / Creator:Park, Byungkyu ; Im, Jinho ; Han, Kyungsook
Publisher:Basel: MDPI AG
Journal title:Biomolecules (Basel, Switzerland), 2022-07, Vol.12 (7), p.979
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ArticlesPeer ReviewedFull Text
miRNA-Disease Association Prediction with Collaborative Matrix Factorization
Author / Creator:Honig, Barry ; Nandi, Asoke K. ; Han, Kyungsook ; Zhang, You-Hua ; Shen, Zhen ; Huang, De-Shuang
Publisher:Cairo, Egypt: Hindawi Publishing Corporation
Journal title:Complexity (New York, N.Y.), 2017-01, Vol.2017 (2017), p.1-9
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ArticlesPeer ReviewedFull Text
A semi-supervised learning approach to predict synthetic genetic interactions by combining functional and topological properties of functional gene network
Author / Creator:You, Zhu-Hong ; Yin, Zheng ; Han, Kyungsook ; Huang, De-Shuang ; Zhou, Xiaobo
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2010-06, Vol.11 (1), p.343-343, Article 343
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ArticlesPeer ReviewedFull Text
Modeling the interactions of Alzheimer-related genes from the whole brain microarray data and diffusion tensor images of human brain
Author / Creator:Park, Byungkyu ; Lee, Wook ; Han, Kyungsook
Publisher:England: BioMed Central
Journal title:BMC bioinformatics, 2012-05, Vol.13 (S7), p.S10-S10, Article S10
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ArticlesPeer ReviewedFull Text
An ontology-based search engine for protein-protein interactions
Author / Creator:Park, Byungkyu ; Han, Kyungsook
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2010-01, Vol.11 (S1), p.S23-S23, Article S23
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ArticlesPeer ReviewedFull Text
Qualitative reasoning of dynamic gene regulatory interactions from gene expression data
Author / Creator:Chen, Yu ; Park, Byungkyu ; Han, Kyungsook
Publisher:England: BioMed Central
Journal title:BMC genomics, 2010-12, Vol.11 (S4), p.S14-S14, Article S14
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ArticlesPeer ReviewedFull Text
Finding motif pairs in the interactions between heterogeneous proteins via bootstrapping and boosting
Author / Creator:Kim, Jisu ; Huang, De-Shuang ; Han, Kyungsook
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2009-01, Vol.10 (S1), p.S57-S57, Article S57
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ArticlesPeer ReviewedFull Text
Finding miRNA–RNA Network Biomarkers for Predicting Metastasis and Prognosis in Cancer
Author / Creator:Lee, Seokwoo ; Cho, Myounghoon ; Park, Byungkyu ; Han, Kyungsook
Publisher:Switzerland: MDPI AG
Journal title:International journal of molecular sciences, 2023-03, Vol.24 (5), p.5052
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ArticlesPeer ReviewedFull Text
Predicting protein-binding RNA nucleotides using the feature-based removal of data redundancy and the interaction propensity of nucleotide triplets
Author / Creator:Choi, Sungwook ; Han, Kyungsook
Publisher:United States: Elsevier Ltd
Journal title:Computers in biology and medicine, 2013-11, Vol.43 (11), p.1687-1697
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ArticlesPeer ReviewedFull Text
Prediction of RNA-binding amino acids from protein and RNA sequences
Author / Creator:Choi, Sungwook ; Han, Kyungsook
Publisher:England: BioMed Central
Journal title:BMC bioinformatics, 2011-11, Vol.12 (S13), p.S7-S7, Article S7
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ArticlesPeer ReviewedFull Text
Classification of diffusion tensor images for the early detection of Alzheimer's disease
Author / Creator:Lee, Wook ; Park, Byungkyu ; Han, Kyungsook
Publisher:United States: Elsevier Ltd
Journal title:Computers in biology and medicine, 2013-10, Vol.43 (10), p.1313-1320
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ArticlesPeer ReviewedFull Text
Predicting protein-binding regions in RNA using nucleotide profiles and compositions
Author / Creator:Choi, Daesik ; Park, Byungkyu ; Chae, Hanju ; Lee, Wook ; Han, Kyungsook
Publisher:England: BioMed Central
Journal title:BMC systems biology, 2017-03, Vol.11 (S2), p.16-16, Article 16
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A generalized approach to predicting protein-protein interactions between virus and host

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Prediction of protein-protein interactions between viruses and human by an SVM model

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DLoopCaller: A deep learning approach for predicting genome-wide chromatin loops by integrating accessible chromatin landscapes

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A generative model for constructing nucleic acid sequences binding to a protein

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Predicting lymph node metastasis and prognosis of individual cancer patients based on miRNA-mediated RNA interactions

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Constructing lncRNA-miRNA-mRNA networks specific to individual cancer patients and finding prognostic biomarkers

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Finding prognostic gene pairs for cancer from patient-specific gene networks

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Constructing cancer patient-specific and group-specific gene networks with multi-omics data

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Comparative Analysis of Gene Correlation Networks of Breast Cancer Patients Based on Mutations in TP53

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miRNA-Disease Association Prediction with Collaborative Matrix Factorization

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A semi-supervised learning approach to predict synthetic genetic interactions by combining functional and topological properties of functional gene network

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Modeling the interactions of Alzheimer-related genes from the whole brain microarray data and diffusion tensor images of human brain

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An ontology-based search engine for protein-protein interactions

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Qualitative reasoning of dynamic gene regulatory interactions from gene expression data

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Finding motif pairs in the interactions between heterogeneous proteins via bootstrapping and boosting

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Finding miRNA–RNA Network Biomarkers for Predicting Metastasis and Prognosis in Cancer

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Predicting protein-binding RNA nucleotides using the feature-based removal of data redundancy and the interaction propensity of nucleotide triplets

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Prediction of RNA-binding amino acids from protein and RNA sequences

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Classification of diffusion tensor images for the early detection of Alzheimer's disease

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Predicting protein-binding regions in RNA using nucleotide profiles and compositions

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