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17 results for Hatakeyama,+Masaomi

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ArticlesPeer ReviewedFull Text
SUSHI: an exquisite recipe for fully documented, reproducible and reusable NGS data analysis
Author / Creator:Hatakeyama, Masaomi ; Opitz, Lennart ; Russo, Giancarlo ; Qi, Weihong ; Schlapbach, Ralph ; Rehrauer, Hubert
Publisher:England: BioMed Central
Journal title:BMC bioinformatics, 2016-06, Vol.17 (1), p.228-228, Article 228
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Patterns of polymorphism and selection in the subgenomes of the allopolyploid Arabidopsis kamchatica
Author / Creator:Paape, Timothy ; Briskine, Roman V. ; Halstead-Nussloch, Gwyneth ; Lischer, Heidi E. L. ; Shimizu-Inatsugi, Rie ; Hatakeyama, Masaomi ; Tanaka, Kenta ; Nishiyama, Tomoaki ; Sabirov, Renat ; Sese, Jun ; Shimizu, Kentaro K.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2018-09, Vol.9 (1), p.3909-13, Article 3909
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Dominance in self-compatibility between subgenomes of allopolyploid Arabidopsis kamchatica shown by transgenic restoration of self-incompatibility
Author / Creator:Yew, Chow-Lih ; Tsuchimatsu, Takashi ; Shimizu-Inatsugi, Rie ; Yasuda, Shinsuke ; Hatakeyama, Masaomi ; Kakui, Hiroyuki ; Ohta, Takuma ; Suwabe, Keita ; Watanabe, Masao ; Takayama, Seiji ; Shimizu, Kentaro K.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2023-11, Vol.14 (1), p.7618-7618, Article 7618
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Seasonal pigment fluctuation in diploid and polyploid Arabidopsis revealed by machine learning-based phenotyping method PlantServation
Author / Creator:Akiyama, Reiko ; Goto, Takao ; Tameshige, Toshiaki ; Sugisaka, Jiro ; Kuroki, Ken ; Sun, Jianqiang ; Akita, Junichi ; Hatakeyama, Masaomi ; Kudoh, Hiroshi ; Kenta, Tanaka ; Tonouchi, Aya ; Shimahara, Yuki ; Sese, Jun ; Kutsuna, Natsumaro ; Shimizu-Inatsugi, Rie ; Shimizu, Kentaro K.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2023-09, Vol.14 (1), p.5792-5792, Article 5792
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The genome of Shorea leprosula (Dipterocarpaceae) highlights the ecological relevance of drought in aseasonal tropical rainforests
Author / Creator:Ng, Kevin Kit Siong ; Kobayashi, Masaki J. ; Fawcett, Jeffrey A. ; Hatakeyama, Masaomi ; Paape, Timothy ; Ng, Chin Hong ; Ang, Choon Cheng ; Tnah, Lee Hong ; Lee, Chai Ting ; Nishiyama, Tomoaki ; Sese, Jun ; O’Brien, Michael J. ; Copetti, Dario ; Isa, Mohd Noor Mat ; Ong, Robert Cyril ; Putra, Mahardika ; Siregar, Iskandar Z. ; Indrioko, Sapto ; Kosugi, Yoshiko ; Izuno, Ayako ; Isagi, Yuji ; Lee, Soon Leong ; Shimizu, Kentaro K.
Publisher:London: Nature Publishing Group UK
Journal title:Communications biology, 2021-10, Vol.4 (1), p.1166-14, Article 1166
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Fermentation Ability of Gut Microbiota of Wild Japanese Macaques in the Highland and Lowland Yakushima: In Vitro Fermentation Assay and Genetic Analyses
Author / Creator:Hanya, Goro ; Tackmann, Janko ; Sawada, Akiko ; Lee, Wanyi ; Pokharel, Sanjeeta Sharma ; de Castro Maciel, Valdevino Gisele ; Toge, Akito ; Kuroki, Kota ; Otsuka, Ryoma ; Mabuchi, Ryoma ; Liu, Jie ; Hatakeyama, Masaomi ; Yamasaki, Eri ; von Mering, Christian ; Shimizu-Inatsugi, Rie ; Hayakawa, Takashi ; Shimizu, Kentaro K. ; Ushida, Kazunari
Publisher:New York: Springer Science + Business Media
Journal title:Microbial ecology, 2020-08, Vol.80 (2), p.459-474
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Updated Genome Assembly and Annotation for Metrosideros polymorpha, an Emerging Model Tree Species of Ecological Divergence
Author / Creator:Izuno, Ayako ; Wicker, Thomas ; Hatakeyama, Masaomi ; Copetti, Dario ; Shimizu, Kentaro K
Publisher:Oxford: Oxford University Press
Journal title:G3 : genes - genomes - genetics, 2019-11, Vol.9 (11), p.3513-3520
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Artificial selection reveals the role of transcriptional constraints in the maintenance of life history variation
Author / Creator:Pick, Joel L. ; Hatakeyama, Masaomi ; Ihle, Kate E. ; Gasparini, Julien ; Haussy, Claudy ; Ishishita, Satoshi ; Matsuda, Yoichi ; Yoshimura, Takashi ; Kanaoka, Masahiro M. ; Shimizu‐Inatsugi, Rie ; Shimizu, Kentaro K. ; Tschirren, Barbara
Publisher:England: Oxford University Press
Journal title:Evolution letters, 2020-06, Vol.4 (3), p.200-211
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Homeolog expression quantification methods for allopolyploids
Author / Creator:Kuo, Tony C Y ; Hatakeyama, Masaomi ; Tameshige, Toshiaki ; Shimizu, Kentaro K ; Sese, Jun
Publisher:England: Oxford University Press
Journal title:Briefings in bioinformatics, 2020-03, Vol.21 (2), p.395-407
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Conserved but Attenuated Parental Gene Expression in Allopolyploids: Constitutive Zinc Hyperaccumulation in the Allotetraploid Arabidopsis kamchatica
Author / Creator:Paape, Timothy ; Hatakeyama, Masaomi ; Shimizu-Inatsugi, Rie ; Teo Cereghetti ; Onda, Yoshihiko ; Tanaka Kenta ; Sese, Jun ; Shimizu, Kentaro K
Publisher:Oxford: Oxford University Press
Journal title:Molecular biology and evolution, 2016-11, Vol.33 (11), p.2781-2800
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Fine-scale empirical data on niche divergence and homeolog expression patterns in an allopolyploid and its diploid progenitor species
Author / Creator:Akiyama, Reiko ; Sun, Jianqiang ; Hatakeyama, Masaomi ; Lischer, Heidi E. L. ; Briskine, Roman V. ; Hay, Angela ; Gan, Xiangchao ; Tsiantis, Miltos ; Kudoh, Hiroshi ; Kanaoka, Masahiro M. ; Sese, Jun ; Shimizu, Kentaro K. ; Shimizu-Inatsugi, Rie
Publisher:England: Wiley
Journal title:The New phytologist, 2021-03, Vol.229 (6), p.3587-3601
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ArticlesPeer ReviewedFull Text
Corrigendum
Author / Creator:Akiyama, Reiko ; Briskine, Roman V. ; Gan, Xiangchao ; Hatakeyama, Masaomi ; Kudoh, Hiroshi ; Lischer, Heidi E. L. ; Sese, Jun ; Shimizu, Kentaro K. ; Shimizu‐Inatsugi, Rie ; Sun, Jianqiang
Publisher:Hoboken: John Wiley and Sons Inc
Journal title:The New phytologist, 2021-04, Vol.231 (1), p.500-500
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ArticlesPeer ReviewedFull Text
Genome sequencing of Metrosideros polymorpha (Myrtaceae), a dominant species in various habitats in the Hawaiian Islands with remarkable phenotypic variations
Author / Creator:Izuno, Ayako ; Hatakeyama, Masaomi ; Nishiyama, Tomoaki ; Tamaki, Ichiro ; Shimizu-Inatsugi, Rie ; Sasaki, Ryuta ; Shimizu, Kentaro K. ; Isagi, Yuji
Publisher:Tokyo: Springer Japan
Journal title:Journal of plant research, 2016-07, Vol.129 (4), p.727-736
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Fine-scale ecological and transcriptomic data reveal niche differentiation of an allopolyploid from diploid parents in Cardamine
Author / Creator:Akiyama, Reiko ; Sun, Jianqiang ; Hatakeyama, Masaomi ; Heidi El Lischer ; Briskine, Roman V ; Hay, Angela ; Gan, Xiangchao ; Tsiantis, Miltos ; Kudoh, Hiroshi ; Kanaoka, Masahiro M ; Sese, Jun ; Shimizu, Kentaro K ; Shimizu-Inatsugi, Rie
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2020-06
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Genet assignment and population structure analysis in a clonal forest-floor herb, Cardamine leucantha, using RAD-seq
Author / Creator:Tsujimoto, Michiaki ; Araki, Kiwako S ; Honjo, Mie N ; Yasugi, Masaki ; Nagano, Atsushi J ; Akama, Satoru ; Hatakeyama, Masaomi ; Shimizu-Inatsugi, Rie ; Sese, Jun ; Shimizu, Kentaro K ; Kudoh, Hiroshi
Publisher:US: Oxford University Press
Journal title:AoB plants, 2020-02, Vol.12 (1), p.plz080-plz080
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PlantServation: time-series phenotyping using machine learning revealed seasonal pigment fluctuation in diploid and polyploid Arabidopsis
Author / Creator:Akiyama, Reiko ; Goto, Takao ; Tameshige, Toshiaki ; Sugisaka, Jiro ; Kuroki, Ken ; Sun, Jianqiang ; Akita, Junichi ; Hatakeyama, Masaomi ; Kudoh, Hiroshi ; Tanaka Kenta ; Tonouchi, Aya ; Shimahara, Yuki ; Sese, Jun ; Kutsuna, Natsumaro ; Shimizu-Inatsugi, Rie ; Shimizu, Kentaro K
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2022-11
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Homeolog expression quantification methods for allopolyploids
Author / Creator:Kuo, Tony ; Hatakeyama, Masaomi ; Tameshige, Toshiaki ; Shimizu, Kentaro K ; Sese, Jun
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2018-09
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SUSHI: an exquisite recipe for fully documented, reproducible and reusable NGS data analysis

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Patterns of polymorphism and selection in the subgenomes of the allopolyploid Arabidopsis kamchatica

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Dominance in self-compatibility between subgenomes of allopolyploid Arabidopsis kamchatica shown by transgenic restoration of self-incompatibility

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Seasonal pigment fluctuation in diploid and polyploid Arabidopsis revealed by machine learning-based phenotyping method PlantServation

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The genome of Shorea leprosula (Dipterocarpaceae) highlights the ecological relevance of drought in aseasonal tropical rainforests

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Fermentation Ability of Gut Microbiota of Wild Japanese Macaques in the Highland and Lowland Yakushima: In Vitro Fermentation Assay and Genetic Analyses

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Updated Genome Assembly and Annotation for Metrosideros polymorpha, an Emerging Model Tree Species of Ecological Divergence

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Artificial selection reveals the role of transcriptional constraints in the maintenance of life history variation

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Homeolog expression quantification methods for allopolyploids

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Conserved but Attenuated Parental Gene Expression in Allopolyploids: Constitutive Zinc Hyperaccumulation in the Allotetraploid Arabidopsis kamchatica

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Fine-scale empirical data on niche divergence and homeolog expression patterns in an allopolyploid and its diploid progenitor species

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Corrigendum

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Genome sequencing of Metrosideros polymorpha (Myrtaceae), a dominant species in various habitats in the Hawaiian Islands with remarkable phenotypic variations

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Fine-scale ecological and transcriptomic data reveal niche differentiation of an allopolyploid from diploid parents in Cardamine

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Genet assignment and population structure analysis in a clonal forest-floor herb, Cardamine leucantha, using RAD-seq

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PlantServation: time-series phenotyping using machine learning revealed seasonal pigment fluctuation in diploid and polyploid Arabidopsis

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Homeolog expression quantification methods for allopolyploids

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