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Hirsch, Candice N
Journal title:American Men & Women of Science : A Biographical Directory of Today’s Leaders in Physical, Biological and Related Sciences: HAM-INF, 2022, p.4992-4992
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Hirsch, Candice N
Journal title:American Men & Women of Science : A Biographical Directory of Today’s Leaders in Physical, Biological and Related Sciences: HAM-INF, 2021, p.4972-4972
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ArticlesPeer ReviewedFull Text
How the pan-genome is changing crop genomics and improvement
Author / Creator:Della Coletta, Rafael ; Qiu, Yinjie ; Ou, Shujun ; Hufford, Matthew B. ; Hirsch, Candice N.
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2021-01, Vol.22 (1), p.3-3, Article 3
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Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline
Author / Creator:Ou, Shujun ; Su, Weija ; Liao, Yi ; Chougule, Kapeel ; Agda, Jireh R. A. ; Hellinga, Adam J. ; Lugo, Carlos Santiago Blanco ; Elliott, Tyler A. ; Ware, Doreen ; Peterson, Thomas ; Jiang, Ning ; Hirsch, Candice N. ; Hufford, Matthew B.
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2019-12, Vol.20 (1), p.275-275, Article 275
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ArticlesPeer ReviewedFull Text
Transposable Elements Contribute to Activation of Maize Genes in Response to Abiotic Stress
Author / Creator:Makarevitch, Irina ; Waters, Amanda J. ; West, Patrick T. ; Stitzer, Michelle ; Hirsch, Candice N. ; Ross-Ibarra, Jeffrey ; Springer, Nathan M.
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2015, Vol.11 (1), p.e1004915-e1004915
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ArticlesPeer ReviewedFull Text
Response to Commentary: Accounting for diverse transposable element landscapes is key to developing and evaluating accurate de novo annotation strategies
Author / Creator:Ou, Shujun ; Jiang, Ning ; Hirsch, Candice N. ; Hufford, Matthew B.
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2024-01, Vol.25 (1), p.6-4, Article 6
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RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome
Author / Creator:Li, Qing ; Gent, Jonathan I. ; Zynda, Greg ; Song, Jawon ; Makarevitch, Irina ; Hirsch, Cory D. ; Hirsch, Candice N. ; Dawe, R. Kelly ; Madzima, Thelma F. ; McGinnis, Karen M. ; Lisch, Damon ; Schmitz, Robert J. ; Vaughn, Matthew W. ; Springer, Nathan M.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2015-11, Vol.112 (47), p.14728-14733
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ArticlesPeer ReviewedFull Text
Gapless assembly of maize chromosomes using long-read technologies
Author / Creator:Liu, Jianing ; Seetharam, Arun S. ; Chougule, Kapeel ; Ou, Shujun ; Swentowsky, Kyle W. ; Gent, Jonathan I. ; Llaca, Victor ; Woodhouse, Margaret R. ; Manchanda, Nancy ; Presting, Gernot G. ; Kudrna, David A. ; Alabady, Magdy ; Hirsch, Candice N. ; Fengler, Kevin A. ; Ware, Doreen ; Michael, Todd P. ; Hufford, Matthew B. ; Dawe, R. Kelly
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2020-05, Vol.21 (1), p.121-121, Article 121
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ArticlesPeer ReviewedFull Text
Maize Gene Atlas Developed by RNA Sequencing and Comparative Evaluation of Transcriptomes Based on RNA Sequencing and Microarrays
Author / Creator:Sekhon, Rajandeep S. ; Briskine, Roman ; Hirsch, Candice N. ; Myers, Chad L. ; Springer, Nathan M. ; Buell, C. Robin ; de Leon, Natalia ; Kaeppler, Shawn M.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2013-04, Vol.8 (4), p.e61005-e61005
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An Expanded Maize Gene Expression Atlas based on RNA Sequencing and its Use to Explore Root Development
Author / Creator:Stelpflug, Scott C. ; Sekhon, Rajandeep S. ; Vaillancourt, Brieanne ; Hirsch, Candice N. ; Buell, C. Robin ; Leon, Natalia ; Kaeppler, Shawn M.
Publisher:United States: Crop Science Society of America
Journal title:The plant genome, 2016-03, Vol.9 (1), p.1-16
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Combined analysis of transposable elements and structural variation in maize genomes reveals genome contraction outpaces expansion
Author / Creator:Munasinghe, Manisha ; Read, Andrew ; Stitzer, Michelle C. ; Song, Baoxing ; Menard, Claire C. ; Ma, Kristy Yubo ; Brandvain, Yaniv ; Hirsch, Candice N. ; Springer, Nathan
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2023-12, Vol.19 (12), p.e1011086
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Monitoring the interplay between transposable element families and DNA methylation in maize
Author / Creator:Noshay, Jaclyn M. ; Anderson, Sarah N. ; Zhou, Peng ; Ji, Lexiang ; Ricci, William ; Lu, Zefu ; Stitzer, Michelle C. ; Crisp, Peter A. ; Hirsch, Candice N. ; Zhang, Xiaoyu ; Schmitz, Robert J. ; Springer, Nathan M.
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2019-09, Vol.15 (9), p.e1008291-e1008291
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ArticlesPeer ReviewedFull Text
Genome-wide association analysis of stalk biomass and anatomical traits in maize
Author / Creator:Mazaheri, Mona ; Heckwolf, Marlies ; Vaillancourt, Brieanne ; Gage, Joseph L. ; Burdo, Brett ; Heckwolf, Sven ; Barry, Kerrie ; Lipzen, Anna ; Ribeiro, Camila Bastos ; Kono, Thomas J. Y. ; Kaeppler, Heidi F. ; Spalding, Edgar P. ; Hirsch, Candice N. ; Robin Buell, C. ; de Leon, Natalia ; Kaeppler, Shawn M.
Publisher:England: BioMed Central Ltd
Journal title:BMC plant biology, 2019-01, Vol.19 (1), p.45-45, Article 45
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ArticlesPeer ReviewedFull Text
Marker Density and Read Depth for Genotyping Populations Using Genotyping-by-Sequencing
Author / Creator:Beissinger, Timothy M ; Hirsch, Candice N ; Sekhon, Rajandeep S ; Foerster, Jillian M ; Johnson, James M ; Muttoni, German ; Vaillancourt, Brieanne ; Buell, C Robin ; Kaeppler, Shawn M ; de Leon, Natalia
Publisher:United States: Genetics Society of America
Journal title:Genetics (Austin), 2013-04, Vol.193 (4), p.1073-1081
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ArticlesPeer ReviewedFull Text
Whole Transcriptome Profiling of Maize during Early Somatic Embryogenesis Reveals Altered Expression of Stress Factors and Embryogenesis-Related Genes
Author / Creator:Salvo, Stella A. G. D. ; Hirsch, Candice N. ; Buell, C. Robin ; Kaeppler, Shawn M. ; Kaeppler, Heidi F.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2014-10, Vol.9 (10), p.e111407
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Genotype-by-environment interactions affecting heterosis in maize
Author / Creator:Li, Zhi ; Coffey, Lisa ; Garfin, Jacob ; Miller, Nathan D. ; White, Michael R. ; Spalding, Edgar P. ; de Leon, Natalia ; Kaeppler, Shawn M. ; Schnable, Patrick S. ; Springer, Nathan M. ; Hirsch, Candice N.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2018-01, Vol.13 (1), p.e0191321-e0191321
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ArticlesPeer ReviewedFull Text
Development of a Multiparent Population for Genetic Mapping and Allele Discovery in Six-Row Barley
Author / Creator:Hemshrot, Alex ; Poets, Ana M ; Tyagi, Priyanka ; Lei, Li ; Carter, Corey K ; Hirsch, Candice N ; Li, Lin ; Brown-Guedira, Gina ; Morrell, Peter L ; Muehlbauer, Gary J ; Smith, Kevin P
Publisher:United States: Genetics Society of America
Journal title:Genetics (Austin), 2019-10, Vol.213 (2), p.595-613
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ArticlesPeer ReviewedFull Text
SpykProps: an imaging pipeline to quantify architecture in unilateral grass inflorescences
Author / Creator:Barreto Ortiz, Joan ; Hirsch, Candice N. ; Ehlke, Nancy Jo ; Watkins, Eric
Publisher:London: BioMed Central Ltd
Journal title:Plant methods, 2023-11, Vol.19 (1), p.1-125, Article 125
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ArticlesPeer ReviewedFull Text
Correction: Transposable Elements Contribute to Activation of Maize Genes in Response to Abiotic Stress
Author / Creator:Makarevitch, Irina ; Waters, Amanda J. ; West, Patrick T. ; Stitzer, Michelle ; Hirsch, Candice N. ; Ross-Ibarra, Jeffrey ; Springer, Nathan M.
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2015-10, Vol.11 (10), p.e1005566-e1005566
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UAV‐based imaging platform for monitoring maize growth throughout development
Author / Creator:Tirado, Sara B. ; Hirsch, Candice N. ; Springer, Nathan M.
Publisher:England: John Wiley & Sons, Inc
Journal title:Plant direct, 2020-06, Vol.4 (6), p.e00230-n/a
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Hirsch, Candice N

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Hirsch, Candice N

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How the pan-genome is changing crop genomics and improvement

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Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline

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Transposable Elements Contribute to Activation of Maize Genes in Response to Abiotic Stress

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Response to Commentary: Accounting for diverse transposable element landscapes is key to developing and evaluating accurate de novo annotation strategies

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RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome

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Gapless assembly of maize chromosomes using long-read technologies

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Maize Gene Atlas Developed by RNA Sequencing and Comparative Evaluation of Transcriptomes Based on RNA Sequencing and Microarrays

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An Expanded Maize Gene Expression Atlas based on RNA Sequencing and its Use to Explore Root Development

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Combined analysis of transposable elements and structural variation in maize genomes reveals genome contraction outpaces expansion

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Monitoring the interplay between transposable element families and DNA methylation in maize

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Genome-wide association analysis of stalk biomass and anatomical traits in maize

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Marker Density and Read Depth for Genotyping Populations Using Genotyping-by-Sequencing

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Whole Transcriptome Profiling of Maize during Early Somatic Embryogenesis Reveals Altered Expression of Stress Factors and Embryogenesis-Related Genes

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Genotype-by-environment interactions affecting heterosis in maize

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Development of a Multiparent Population for Genetic Mapping and Allele Discovery in Six-Row Barley

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SpykProps: an imaging pipeline to quantify architecture in unilateral grass inflorescences

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Correction: Transposable Elements Contribute to Activation of Maize Genes in Response to Abiotic Stress

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UAV‐based imaging platform for monitoring maize growth throughout development

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