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ArticlesPeer ReviewedFull Text
Estimating axial diffusivity in the NODDI model
Author / Creator:Howard, Amy FD ; Cottaar, Michiel ; Drakesmith, Mark ; Fan, Qiuyun ; Huang, Susie Y. ; Jones, Derek K. ; Lange, Frederik J. ; Mollink, Jeroen ; Rudrapatna, Suryanarayana Umesh ; Tian, Qiyuan ; Miller, Karla L ; Jbabdi, Saad
Publisher:United States: Elsevier Inc
Journal title:NeuroImage (Orlando, Fla.), 2022-11, Vol.262, p.119535-119535, Article 119535
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ArticlesPeer ReviewedFull Text
The Digital Brain Bank, an open access platform for post-mortem imaging datasets
Author / Creator:Tendler, Benjamin C ; Hanayik, Taylor ; Ansorge, Olaf ; Bangerter-Christensen, Sarah ; Berns, Gregory S ; Bertelsen, Mads F ; Bryant, Katherine L ; Foxley, Sean ; van den Heuvel, Martijn P ; Howard, Amy FD ; Huszar, Istvan N ; Khrapitchev, Alexandre A ; Leonte, Anna ; Manger, Paul R ; Menke, Ricarda AL ; Mollink, Jeroen ; Mortimer, Duncan ; Pallebage-Gamarallage, Menuka ; Roumazeilles, Lea ; Sallet, Jerome ; Scholtens, Lianne H ; Scott, Connor ; Smart, Adele ; Turner, Martin R ; Wang, Chaoyue ; Jbabdi, Saad ; Mars, Rogier B ; Miller, Karla L
Publisher:England: eLife Sciences Publication
Journal title:eLife, 2022-03, Vol.11
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ArticlesPeer ReviewedFull Text
Post mortem mapping of connectional anatomy for the validation of diffusion MRI
Author / Creator:Yendiki, Anastasia ; Aggarwal, Manisha ; Axer, Markus ; Howard, Amy F.D. ; van Walsum, Anne-Marie van Cappellen ; Haber, Suzanne N.
Publisher:United States: Elsevier Inc
Journal title:NeuroImage (Orlando, Fla.), 2022-08, Vol.256, p.119146-119146, Article 119146
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ArticlesPeer ReviewedFull Text
Joint modelling of diffusion MRI and microscopy
Author / Creator:Howard, Amy FD ; Mollink, Jeroen ; Kleinnijenhuis, Michiel ; Pallebage-Gamarallage, Menuka ; Bastiani, Matteo ; Cottaar, Michiel ; Miller, Karla L. ; Jbabdi, Saad
Publisher:United States: Elsevier Inc
Journal title:NeuroImage (Orlando, Fla.), 2019-11, Vol.201, p.116014-116014, Article 116014
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ArticlesPeer ReviewedFull Text
Tensor image registration library: Deformable registration of stand‐alone histology images to whole‐brain post‐mortem MRI data
Author / Creator:Huszar, Istvan N. ; Pallebage-Gamarallage, Menuka ; Bangerter-Christensen, Sarah ; Brooks, Hannah ; Fitzgibbon, Sean ; Foxley, Sean ; Hiemstra, Marlies ; Howard, Amy F.D. ; Jbabdi, Saad ; Kor, Daniel Z.L. ; Leonte, Anna ; Mollink, Jeroen ; Smart, Adele ; Tendler, Benjamin C. ; Turner, Martin R. ; Ansorge, Olaf ; Miller, Karla L. ; Jenkinson, Mark
Publisher:United States: Elsevier Inc
Journal title:NeuroImage (Orlando, Fla.), 2023-01, Vol.265, p.119792-119792, Article 119792
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ArticlesPeer ReviewedFull Text
An automated pipeline for extracting histological stain area fraction for voxelwise quantitative MRI-histology comparisons
Author / Creator:Kor, Daniel Z.L. ; Jbabdi, Saad ; Huszar, Istvan N. ; Mollink, Jeroen ; Tendler, Benjamin C. ; Foxley, Sean ; Wang, Chaoyue ; Scott, Connor ; Smart, Adele ; Ansorge, Olaf ; Pallebage-Gamarallage, Menuka ; Miller, Karla L. ; Howard, Amy F.D.
Publisher:United States: Elsevier Inc
Journal title:NeuroImage (Orlando, Fla.), 2022-12, Vol.264, p.119726-119726, Article 119726
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ArticlesFull Text
Imaging the structural connectome with hybrid diffusion MRI-microscopy tractography
Author / Creator:Zhu, Silei ; Huszar, Istvan N ; Cottaar, Michiel ; Daubney, Greg ; Eichert, Nicole ; Taylor Hanayik ; Khrapitchev, Alexandre A ; Mars, Rogier B ; Mollink, Jeroen ; Sallet, Jerome ; Connor, Scott ; Smart, Adele ; Jbabdi, Saad ; Miller, Karla L ; Howard, Amy Fd
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2024-01
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ArticlesFull Text
Considerations and recommendations from the ISMRM Diffusion Study Group for preclinical diffusion MRI: Part 3 -- Ex vivo imaging: data processing, comparisons with microscopy, and tractography
Author / Creator:Schilling, Kurt G ; Howard, Amy FD ; Grussu, Francesco ; Andrada Ianus ; Hansen, Brian ; Barrett, Rachel L C ; Aggarwal, Manisha ; Michielse, Stijn ; Nasrallah, Fatima ; Warda Syeda ; Wang, Nian ; Veraart, Jelle ; Alard Roebroeck ; Bagdasarian, Andrew F ; Eichner, Cornelius ; Sepehrband, Farshid ; Zimmermann, Jan ; Lucas Soustelle ; Bowman, Christien ; Tendler, Benjamin C ; Hertanu, Andreea ; Jeurissen, Ben ; Verhoye, Marleen ; Frydman, Lucio ; Yohan van de Looij ; Hike, David ; Dunn, Jeff F ; Miller, Karla ; Landman, Bennett A ; Shemesh, Noam ; Anderson, Adam ; McKinnon, Emilie ; Farquharson, Shawna ; Flavio Dell' Acqua ; Pierpaoli, Carlo ; Drobnjak, Ivana ; Leemans, Alexander ; Harkins, Kevin D ; Descoteaux, Maxime ; Xu, Duan ; Huang, Hao ; Santin, Mathieu D ; Grant, Samuel C ; Obenaus, Andre ; Kim, Gene S ; Wu, Dan ; Denis Le Bihan ; Blackband, Stephen J ; Ciobanu, Luisa ; Fieremans, Els ; Bai, Ruiliang ; Leergaard, Trygve B ; Zhang, Jiangyang ; Dyrby, Tim B ; Johnson, G Allan ; Cohen-Adad, Julien ; Budde, Matthew D ; Jelescu, Ileana O
Publisher:Ithaca: Cornell University Library, arXiv.org
Journal title:arXiv.org, 2024-10
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ArticlesFull Text
Considerations and recommendations from the ISMRM Diffusion Study Group for preclinical diffusion MRI: Part 2 -- Ex vivo imaging: added value and acquisition
Author / Creator:Schilling, Kurt G ; Grussu, Francesco ; Andrada Ianus ; Hansen, Brian ; Howard, Amy FD ; Barrett, Rachel L C ; Aggarwal, Manisha ; Michielse, Stijn ; Nasrallah, Fatima ; Warda Syeda ; Wang, Nian ; Veraart, Jelle ; Alard Roebroeck ; Bagdasarian, Andrew F ; Eichner, Cornelius ; Sepehrband, Farshid ; Zimmermann, Jan ; Lucas Soustelle ; Bowman, Christien ; Tendler, Benjamin C ; Hertanu, Andreea ; Jeurissen, Ben ; Frydman, Lucio ; Yohan van de Looij ; Hike, David ; Dunn, Jeff F ; Miller, Karla ; Landman, Bennett A ; Shemesh, Noam ; Anderson, Adam ; McKinnon, Emilie ; Farquharson, Shawna ; Flavio Dell' Acqua ; Pierpaoli, Carlo ; Drobnjak, Ivana ; Leemans, Alexander ; Harkins, Kevin D ; Descoteaux, Maxime ; Xu, Duan ; Huang, Hao ; Santin, Mathieu D ; Grant, Samuel C ; Obenaus, Andre ; Kim, Gene S ; Wu, Dan ; Denis Le Bihan ; Blackband, Stephen J ; Ciobanu, Luisa ; Fieremans, Els ; Bai, Ruiliang ; Leergaard, Trygve ; Zhang, Jiangyang ; Dyrby, Tim B ; Johnson, G Allan ; Cohen-Adad, Julien ; Budde, Matthew D ; Jelescu, Ileana O
Publisher:Ithaca: Cornell University Library, arXiv.org
Journal title:arXiv.org, 2024-10
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ArticlesFull Text
An automated pipeline for extracting quantitative histological metrics for voxelwise MRI-histology comparisons
Author / Creator:Kor, Daniel Zl ; Jbabdi, Saad ; Huszar, Istvan N ; Mollink, Jeroen ; Tendler, Benjamin C ; Foxley, Sean ; Wang, Chaoyue ; Connor, Scott ; Smart, Adele ; Ansorge, Olaf ; Pallebage-Gamarallage, Menuka ; Miller, Karla L ; Howard, Amy Fd
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2022-02
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ArticlesFull Text
Estimating intra-axonal axial diffusivity in the presence of fibre orientation dispersion
Author / Creator:Howard, Amy Fd ; Lange, Frederik J ; Mollink, Jeroen ; Cottaar, Michiel ; Drakesmith, Mark ; Suryanarayana Umesh Rudrapatna ; Jones, Derek K ; Miller, Karla L ; Jbabdi, Saad
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2020-10
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ArticlesFull Text
The Forget-Me-Not dHCP study: 7 Tesla high resolution diffusion imaging in the unfixed post-mortem neonatal brain
Author / Creator:Wu, Wenchuan ; Baxter, Luke ; Rieger, Sebastian W ; Adams, Eleri ; Andersson, Jesper L R ; Maria Cobo Andrade ; Andritsou, Foteini ; Bastiani, Matteo ; Ria Evans Fry ; Frost, Robert ; Fitzgibbon, Sean ; Foxley, Sean ; Fowler, Darren ; Gallagher, Chris ; Howard, Amy Fd ; Hajnal, Joseph V ; Moultrie, Fiona ; Monk, Vaneesha ; Porter, David Andrew ; Papp, Daniel ; Price, Anthony ; Sallet, Jerome ; Sanders, Michael ; Wilkinson, Dominic ; Smith, Stephen M ; Slater, Rebeccah ; Miller, Karla L
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2021-06
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ArticlesFull Text
The Digital Brain Bank, an open access platform for post-mortem datasets
Author / Creator:Tendler, Benjamin C ; Taylor Hanayik ; Ansorge, Olaf ; Bangerter-Christensen, Sarah ; Berns, Gregory S ; Bertelsen, Mads F ; Bryant, Katherine L ; Foxley, Sean ; Van Den Heuvel, Martijn ; Howard, Amy Fd ; Huszar, Istvan ; Khrapitchev, Alexandre A ; Leonte, Anna ; Manger, Paul R ; Ricarda Al Menke ; Mollink, Jeroen ; Mortimer, Duncan ; Pallebage-Gamarallage, Menuka ; Roumazeilles, Lea ; Sallet, Jerome ; Scholtens, Lianne H ; Connor, Scott ; Smart, Adele ; Turner, Martin R ; Wang, Chaoyue ; Jbabdi, Saad ; Mars, Rogier B ; Miller, Karla L
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2022-01
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Estimating axial diffusivity in the NODDI model

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The Digital Brain Bank, an open access platform for post-mortem imaging datasets

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Post mortem mapping of connectional anatomy for the validation of diffusion MRI

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Joint modelling of diffusion MRI and microscopy

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Tensor image registration library: Deformable registration of stand‐alone histology images to whole‐brain post‐mortem MRI data

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An automated pipeline for extracting histological stain area fraction for voxelwise quantitative MRI-histology comparisons

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Imaging the structural connectome with hybrid diffusion MRI-microscopy tractography

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Considerations and recommendations from the ISMRM Diffusion Study Group for preclinical diffusion MRI: Part 3 -- Ex vivo imaging: data processing, comparisons with microscopy, and tractography

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Considerations and recommendations from the ISMRM Diffusion Study Group for preclinical diffusion MRI: Part 2 -- Ex vivo imaging: added value and acquisition

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An automated pipeline for extracting quantitative histological metrics for voxelwise MRI-histology comparisons

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Estimating intra-axonal axial diffusivity in the presence of fibre orientation dispersion

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The Forget-Me-Not dHCP study: 7 Tesla high resolution diffusion imaging in the unfixed post-mortem neonatal brain

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The Digital Brain Bank, an open access platform for post-mortem datasets

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