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The role of the microbiome in exacerbations of chronic lung diseases
Author / Creator:Dickson, Robert P, MD ; Martinez, Fernando J, Prof ; Huffnagle, Gary B, Prof
Publisher:England: Elsevier Ltd
Journal title:The Lancet (British edition), 2014-08, Vol.384 (9944), p.691-702
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The Lung Microbiome: New Principles for Respiratory Bacteriology in Health and Disease
Author / Creator:Dickson, Robert P. ; Huffnagle, Gary B.
Publisher:United States: Public Library of Science
Journal title:PLoS pathogens, 2015-07, Vol.11 (7), p.e1004923-e1004923
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The Lung Microbiota of Healthy Mice Are Highly Variable, Cluster by Environment, and Reflect Variation in Baseline Lung Innate Immunity
Author / Creator:Dickson, Robert P. ; Erb-Downward, John R. ; Falkowski, Nicole R. ; Hunter, Ellen M. ; Ashley, Shanna L. ; Huffnagle, Gary B.
Publisher:United States: American Thoracic Society
Journal title:American journal of respiratory and critical care medicine, 2018-08, Vol.198 (4), p.497-508
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Spatial Variation in the Healthy Human Lung Microbiome and the Adapted Island Model of Lung Biogeography
Author / Creator:Dickson, Robert P. ; Erb-Downward, John R. ; Freeman, Christine M. ; McCloskey, Lisa ; Beck, James M. ; Huffnagle, Gary B. ; Curtis, Jeffrey L.
Publisher:United States: American Thoracic Society
Journal title:Annals of the American Thoracic Society, 2015-06, Vol.12 (6), p.821-830
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Lung Microbiota Contribute to Pulmonary Inflammation and Disease Progression in Pulmonary Fibrosis
Author / Creator:O’Dwyer, David N. ; Ashley, Shanna L. ; Gurczynski, Stephen J. ; Xia, Meng ; Wilke, Carol ; Falkowski, Nicole R. ; Norman, Katy C. ; Arnold, Kelly B. ; Huffnagle, Gary B. ; Salisbury, Margaret L. ; Han, MeiLan K. ; Flaherty, Kevin R. ; White, Eric S. ; Martinez, Fernando J. ; Erb-Downward, John R. ; Murray, Susan ; Moore, Bethany B. ; Dickson, Robert P.
Publisher:United States: American Thoracic Society
Journal title:American journal of respiratory and critical care medicine, 2019-05, Vol.199 (9), p.1127-1138
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Antibiotic-induced shifts in the mouse gut microbiome and metabolome increase susceptibility to Clostridium difficile infection
Author / Creator:Theriot, Casey M. ; Koenigsknecht, Mark J. ; Carlson, Paul E. ; Hatton, Gabrielle E. ; Nelson, Adam M. ; Li, Bo ; Huffnagle, Gary B. ; Z. Li, Jun ; Young, Vincent B.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2014-01, Vol.5 (1), p.3114-3114, Article 3114
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Analysis of the Lung Microbiome in the “Healthy” Smoker and in COPD
Author / Creator:Erb-Downward, John R. ; Thompson, Deborah L. ; Han, Meilan K. ; Freeman, Christine M. ; McCloskey, Lisa ; Schmidt, Lindsay A. ; Young, Vincent B. ; Toews, Galen B. ; Curtis, Jeffrey L. ; Sundaram, Baskaran ; Martinez, Fernando J. ; Huffnagle, Gary B.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2011-02, Vol.6 (2), p.e16384
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Mathematical modeling of primary succession of murine intestinal microbiota
Author / Creator:Marino, Simeone ; Baxter, Nielson T. ; Huffnagle, Gary B. ; Petrosino, Joseph F. ; Schloss, Patrick D.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2014-01, Vol.111 (1), p.439-444
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The role of the bacterial microbiome in lung disease
Author / Creator:Dickson, Robert P ; Erb-Downward, John R ; Huffnagle, Gary B
Publisher:England: Informa Healthcare
Journal title:Expert review of respiratory medicine, 2013-06, Vol.7 (3), p.245-257
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Host Response to the Lung Microbiome in Chronic Obstructive Pulmonary Disease
Author / Creator:Sze, Marc A. ; Dimitriu, Pedro A. ; Suzuki, Masaru ; McDonough, John E. ; Campbell, Josh D. ; Brothers, John F. ; Erb-Downward, John R. ; Huffnagle, Gary B. ; Hayashi, Shizu ; Elliott, W. Mark ; Cooper, Joel ; Sin, Don D. ; Lenburg, Marc E. ; Spira, Avrum ; Mohn, William W. ; Hogg, James C.
Publisher:United States: American Thoracic Society
Journal title:American journal of respiratory and critical care medicine, 2015-08, Vol.192 (4), p.438-445
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The Microbiota and Allergies/Asthma
Author / Creator:Huffnagle, Gary B.
Publisher:United States: Public Library of Science
Journal title:PLoS pathogens, 2010-05, Vol.6 (5), p.e1000549
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Bacterial Dissemination to the Brain in Sepsis
Author / Creator:Singer, Benjamin H. ; Dickson, Robert P. ; Denstaedt, Scott J. ; Newstead, Michael W. ; Kim, Kwi ; Falkowski, Nicole R. ; Erb-Downward, John R. ; Schmidt, Thomas M. ; Huffnagle, Gary B. ; Standiford, Theodore J.
Publisher:United States: American Thoracic Society
Journal title:American journal of respiratory and critical care medicine, 2018-03, Vol.197 (6), p.747-756
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Changes in the Lung Microbiome following Lung Transplantation Include the Emergence of Two Distinct Pseudomonas Species with Distinct Clinical Associations
Author / Creator:Dickson, Robert P. ; Erb-Downward, John R. ; Freeman, Christine M. ; Walker, Natalie ; Scales, Brittan S. ; Beck, James M. ; Martinez, Fernando J. ; Curtis, Jeffrey L. ; Lama, Vibha N. ; Huffnagle, Gary B.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2014-05, Vol.9 (5), p.e97214
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Dysbiosis in the intensive care unit: Microbiome science coming to the bedside
Author / Creator:Kitsios, Georgios D, MD, PhD ; Morowitz, Michael J, MD ; Dickson, Robert P, MD ; Huffnagle, Gary B., PhD ; McVerry, Bryan J, MD ; Morris, Alison, MD, MS
Publisher:United States: Elsevier Inc
Journal title:Journal of critical care, 2017-04, Vol.38, p.84-91
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Respiratory and Gut Microbiome Modification during Respiratory Syncytial Virus Infection: A Systematic Review
Author / Creator:Yagi, Kazuma ; Lukacs, Nicholas W. ; Huffnagle, Gary B. ; Kato, Hideo ; Asai, Nobuhiro
Publisher:Switzerland: MDPI AG
Journal title:Viruses, 2024-01, Vol.16 (2), p.220
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Whole lung tissue is the preferred sampling method for amplicon-based characterization of murine lung microbiota
Author / Creator:Baker, Jennifer M. ; Hinkle, Kevin J. ; McDonald, Roderick A. ; Brown, Christopher A. ; Falkowski, Nicole R. ; Huffnagle, Gary B. ; Dickson, Robert P.
Publisher:England: BioMed Central
Journal title:Microbiome, 2021-05, Vol.9 (1), p.99-14, Article 99
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Genomic and transcriptomic insights into vertebrate host-specific Lactobacillus johnsonii adaptation in the gastrointestinal tract
Author / Creator:Ravi, Keerthikka ; Falkowski, Nicole R. ; Huffnagle, Gary B.
Publisher:United States: American Society for Microbiology
Journal title:mSphere, 2025-05, Vol.10 (6), p.e0005225
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Lung microbiota associations with clinical features of COPD in the SPIROMICS cohort
Author / Creator:Opron Kristopher ; Begley, Lesa A ; Erb-Downward, John R ; Freeman, Christine ; Madapoosi Siddharth ; Alexis, Neil E ; Barjaktarevic Igor ; Graham Barr R ; Bleecker, Eugene R ; Bowler, Russell P ; Christenson, Stephanie A ; Comellas, Alejandro P ; Cooper, Christopher B ; Couper, David J ; Doerschuk, Claire M ; Dransfield, Mark T ; Han, MeiLan K ; Hansel, Nadia N ; Hastie, Annette T ; Hoffman, Eric A ; Kaner, Robert J ; Krishnan, Jerry ; O’Neal Wanda K ; Ortega, Victor E ; Robert, Paine ; Peters, Stephen P ; Michael Wells J ; Woodruff, Prescott G ; Martinez, Fernando J ; Curtis, Jeffrey L ; Huffnagle, Gary B ; Huang, Yvonne J
Publisher:London: Nature Publishing Group
Journal title:NPJ biofilms and microbiomes, 2021-02, Vol.7 (1)
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ArticlesPeer ReviewedFull Text
The Lung Microbiome during Health and Disease
Author / Creator:Yagi, Kazuma ; Huffnagle, Gary B. ; Lukacs, Nicholas W. ; Asai, Nobuhiro
Publisher:Basel: MDPI AG
Journal title:International journal of molecular sciences, 2021-10, Vol.22 (19), p.10872
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The Systemic Inflammatory Response to Clostridium difficile Infection
Author / Creator:Rao, Krishna ; Erb-Downward, John R. ; Walk, Seth T. ; Micic, Dejan ; Falkowski, Nicole ; Santhosh, Kavitha ; Mogle, Jill A. ; Ring, Cathrin ; Young, Vincent B. ; Huffnagle, Gary B. ; Aronoff, David M.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2014-03, Vol.9 (3), p.e92578
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The role of the microbiome in exacerbations of chronic lung diseases

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The Lung Microbiome: New Principles for Respiratory Bacteriology in Health and Disease

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The Lung Microbiota of Healthy Mice Are Highly Variable, Cluster by Environment, and Reflect Variation in Baseline Lung Innate Immunity

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Spatial Variation in the Healthy Human Lung Microbiome and the Adapted Island Model of Lung Biogeography

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Lung Microbiota Contribute to Pulmonary Inflammation and Disease Progression in Pulmonary Fibrosis

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Antibiotic-induced shifts in the mouse gut microbiome and metabolome increase susceptibility to Clostridium difficile infection

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Analysis of the Lung Microbiome in the “Healthy” Smoker and in COPD

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Mathematical modeling of primary succession of murine intestinal microbiota

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The role of the bacterial microbiome in lung disease

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Host Response to the Lung Microbiome in Chronic Obstructive Pulmonary Disease

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The Microbiota and Allergies/Asthma

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Bacterial Dissemination to the Brain in Sepsis

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Changes in the Lung Microbiome following Lung Transplantation Include the Emergence of Two Distinct Pseudomonas Species with Distinct Clinical Associations

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Dysbiosis in the intensive care unit: Microbiome science coming to the bedside

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Respiratory and Gut Microbiome Modification during Respiratory Syncytial Virus Infection: A Systematic Review

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Whole lung tissue is the preferred sampling method for amplicon-based characterization of murine lung microbiota

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Genomic and transcriptomic insights into vertebrate host-specific Lactobacillus johnsonii adaptation in the gastrointestinal tract

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Lung microbiota associations with clinical features of COPD in the SPIROMICS cohort

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The Lung Microbiome during Health and Disease

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The Systemic Inflammatory Response to Clostridium difficile Infection

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