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39 results for Hughey,+Jacob+J

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ArticlesPeer ReviewedFull Text
Releasing a preprint is associated with more attention and citations for the peer-reviewed article
Author / Creator:Fu, Darwin Y ; Hughey, Jacob J
Publisher:England: eLife Sciences Publications Ltd
Journal title:eLife, 2019-12, Vol.8
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ArticlesPeer ReviewedFull Text
Eating breakfast and avoiding late-evening snacking sustains lipid oxidation
Author / Creator:Kelly, Kevin Parsons ; McGuinness, Owen P ; Buchowski, Maciej ; Hughey, Jacob J ; Chen, Heidi ; Powers, James ; Page, Terry ; Johnson, Carl Hirschie
Publisher:United States: Public Library of Science
Journal title:PLoS biology, 2020-02, Vol.18 (2), p.e3000622-e3000622
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ArticlesPeer ReviewedFull Text
LimoRhyde2: Genomic analysis of biological rhythms based on effect sizes
Author / Creator:Obodo, Dora ; Outland, Elliot H ; Hughey, Jacob J
Publisher:United States: Public Library of Science
Journal title:PloS one, 2023-12, Vol.18 (12), p.e0292089
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ArticlesPeer ReviewedFull Text
Live-cell measurements of kinase activity in single cells using translocation reporters
Author / Creator:Kudo, Takamasa ; Jeknić, Stevan ; Macklin, Derek N ; Akhter, Sajia ; Hughey, Jacob J ; Regot, Sergi ; Covert, Markus W
Publisher:London: Nature Publishing Group UK
Journal title:Nature protocols, 2018-01, Vol.13 (1), p.155-169
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ArticlesPeer ReviewedFull Text
Evidence for widespread dysregulation of circadian clock progression in human cancer
Author / Creator:Shilts, Jarrod ; Chen, Guanhua ; Hughey, Jacob J
Publisher:United States: PeerJ. Ltd
Journal title:PeerJ (San Francisco, CA), 2018-01, Vol.6, p.e4327-e4327, Article e4327
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ArticlesPeer ReviewedFull Text
Machine learning identifies a compact gene set for monitoring the circadian clock in human blood
Author / Creator:Hughey, Jacob J
Publisher:England: BioMed Central
Journal title:Genome medicine, 2017-02, Vol.9 (1), p.19-19, Article 19
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ArticlesPeer ReviewedFull Text
The risks of using the chi-square periodogram to estimate the period of biological rhythms
Author / Creator:Tackenberg, Michael C ; Hughey, Jacob J
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2021-01, Vol.17 (1), p.e1008567-e1008567
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ArticlesPeer ReviewedFull Text
The seeker R package: simplified fetching and processing of transcriptome data
Author / Creator:Schoenbachler, Joshua L ; Hughey, Jacob J
Publisher:United States: PeerJ. Ltd
Journal title:PeerJ (San Francisco, CA), 2022-11, Vol.10, p.e14372-e14372, Article e14372
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ArticlesPeer ReviewedFull Text
Cox regression increases power to detect genotype-phenotype associations in genomic studies using the electronic health record
Author / Creator:Hughey, Jacob J ; Rhoades, Seth D ; Fu, Darwin Y ; Bastarache, Lisa ; Denny, Joshua C ; Chen, Qingxia
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2019-11, Vol.20 (1), p.805-805, Article 805
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ArticlesPeer ReviewedFull Text
pmparser and PMDB: resources for large-scale, open studies of the biomedical literature
Author / Creator:Schoenbachler, Joshua L ; Hughey, Jacob J
Publisher:United States: PeerJ. Ltd
Journal title:PeerJ (San Francisco, CA), 2021-03, Vol.9, p.e11071-e11071, Article e11071
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ArticlesPeer ReviewedFull Text
Self-reported dietary adherence, disease-specific symptoms, and quality of life are associated with healthcare provider follow-up in celiac disease
Author / Creator:Hughey, Jacob J ; Ray, Bonnie K ; Lee, Anne R ; Voorhees, Kristin N ; Kelly, Ciaran P ; Schuppan, Detlef
Publisher:England: BioMed Central Ltd
Journal title:BMC gastroenterology, 2017-12, Vol.17 (1), p.156-156, Article 156
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ArticlesPeer ReviewedFull Text
Simphony: simulating large-scale, rhythmic data
Author / Creator:Singer, Jordan M ; Fu, Darwin Y ; Hughey, Jacob J
Publisher:United States: PeerJ. Ltd
Journal title:PeerJ (San Francisco, CA), 2019-05, Vol.7, p.e6985-e6985, Article e6985
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ArticlesPeer ReviewedFull Text
Single-cell and population NF-κB dynamic responses depend on lipopolysaccharide preparation
Author / Creator:Gutschow, Miriam V ; Hughey, Jacob J ; Ruggero, Nicholas A ; Bajar, Bryce T ; Valle, Sean D ; Covert, Markus W
Publisher:United States: Public Library of Science
Journal title:PloS one, 2013-01, Vol.8 (1), p.e53222-e53222
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ArticlesPeer ReviewedFull Text
Discovering Cross-Reactivity in Urine Drug Screening Immunoassays through Large-Scale Analysis of Electronic Health Records
Author / Creator:Hughey, Jacob J ; Colby, Jennifer M
Publisher:England: Oxford University Press
Journal title:Clinical chemistry (Baltimore, Md.), 2019-12, Vol.65 (12), p.1522-1531
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ArticlesPeer ReviewedFull Text
Single-cell NF-κB dynamics reveal digital activation and analogue information processing
Author / Creator:Tay, Savaş ; Hughey, Jacob J. ; Lee, Timothy K. ; Lipniacki, Tomasz ; Quake, Stephen R. ; Covert, Markus W.
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2010-07, Vol.466 (7303), p.267-271
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ArticlesPeer ReviewedFull Text
Population-level rhythms in human skin with implications for circadian medicine
Author / Creator:Wu, Gang ; Ruben, Marc D. ; Schmidt, Robert E. ; Francey, Lauren J. ; Smith, David F. ; Anafi, Ron C. ; Hughey, Jacob J. ; Tasseff, Ryan ; Sherrill, Joseph D. ; Oblong, John E. ; Mills, Kevin J. ; Hogenesch, John B.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2018-11, Vol.115 (48), p.12313-12318
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ArticlesPeer ReviewedFull Text
Phenotype risk scores identify patients with unrecognized Mendelian disease patterns
Author / Creator:Bastarache, Lisa ; Hughey, Jacob J ; Hebbring, Scott ; Marlo, Joy ; Zhao, Wanke ; Ho, Wanting T ; Van Driest, Sara L ; McGregor, Tracy L ; Mosley, Jonathan D ; Wells, Quinn S ; Temple, Michael ; Ramirez, Andrea H ; Carroll, Robert ; Osterman, Travis ; Edwards, Todd ; Ruderfer, Douglas ; Velez Edwards, Digna R ; Hamid, Rizwan ; Cogan, Joy ; Glazer, Andrew ; Wei, Wei-Qi ; Feng, QiPing ; Brilliant, Murray ; Zhao, Zhizhuang J ; Cox, Nancy J ; Roden, Dan M ; Denny, Joshua C
Publisher:United States: The American Association for the Advancement of Science
Journal title:Science (American Association for the Advancement of Science), 2018-03, Vol.359 (6381), p.1233-1239
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ArticlesPeer ReviewedFull Text
The microfluidic multitrap nanophysiometer for hematologic cancer cell characterization reveals temporal sensitivity of the calcein-AM efflux assay
Author / Creator:Byrd IV, Thomas F. ; Hoang, Loi T. ; Kim, Eric G. ; Pfister, Matthew E. ; Werner, Erik M. ; Arndt, Stephen E. ; Chamberlain, Jeffrey W. ; Hughey, Jacob J. ; Nguyen, Bao A. ; Schneibel, Erik J. ; Wertz, Laura L. ; Whitfield, Jonathan S. ; Wikswo, John P. ; Seale, Kevin T.
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2014-05, Vol.4 (1), p.5117-5117, Article 5117
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ArticlesPeer ReviewedFull Text
Single-cell NF-[kappa]B dynamics reveal digital activation and analogue information processing
Author / Creator:Tay, Savas ; Hughey, Jacob J ; Lee, Timothy K ; Lipniacki, Tomasz ; Quake, Stephen R ; Covert, Markus W
Publisher:London: Nature Publishing Group
Journal title:Nature (London), 2010-07, Vol.466 (7303), p.267-271
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ArticlesFull Text
The seeker R package: simplified fetching and processing of transcriptome data
Author / Creator:Schoenbachler, Joshua L ; Hughey, Jacob J
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2022-09
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Showing 1 to 20 of 39 results

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Releasing a preprint is associated with more attention and citations for the peer-reviewed article

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Eating breakfast and avoiding late-evening snacking sustains lipid oxidation

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LimoRhyde2: Genomic analysis of biological rhythms based on effect sizes

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Live-cell measurements of kinase activity in single cells using translocation reporters

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Evidence for widespread dysregulation of circadian clock progression in human cancer

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Machine learning identifies a compact gene set for monitoring the circadian clock in human blood

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The risks of using the chi-square periodogram to estimate the period of biological rhythms

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The seeker R package: simplified fetching and processing of transcriptome data

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Cox regression increases power to detect genotype-phenotype associations in genomic studies using the electronic health record

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pmparser and PMDB: resources for large-scale, open studies of the biomedical literature

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Self-reported dietary adherence, disease-specific symptoms, and quality of life are associated with healthcare provider follow-up in celiac disease

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Simphony: simulating large-scale, rhythmic data

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Single-cell and population NF-κB dynamic responses depend on lipopolysaccharide preparation

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Discovering Cross-Reactivity in Urine Drug Screening Immunoassays through Large-Scale Analysis of Electronic Health Records

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Single-cell NF-κB dynamics reveal digital activation and analogue information processing

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Population-level rhythms in human skin with implications for circadian medicine

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Phenotype risk scores identify patients with unrecognized Mendelian disease patterns

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The microfluidic multitrap nanophysiometer for hematologic cancer cell characterization reveals temporal sensitivity of the calcein-AM efflux assay

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Single-cell NF-[kappa]B dynamics reveal digital activation and analogue information processing

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The seeker R package: simplified fetching and processing of transcriptome data

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