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CRISPRi for specific inhibition of miRNA clusters and miRNAs with high sequence homology
Author / Creator:Drobna-Śledzińska, Monika ; Maćkowska-Maślak, Natalia ; Jaksik, Roman ; Dąbek, Paulina ; Witt, Michał ; Dawidowska, Małgorzata
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2022-04, Vol.12 (1), p.6297-11, Article 6297
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Detection and characterization of constitutive replication origins defined by DNA polymerase epsilon
Author / Creator:Jaksik, Roman ; Wheeler, David A ; Kimmel, Marek
Publisher:England: BioMed Central Ltd
Journal title:BMC biology, 2023-02, Vol.21 (1), p.41-41, Article 41
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Genomic Analysis of SARS-CoV-2 Alpha, Beta and Delta Variants of Concern Uncovers Signatures of Neutral and Non-Neutral Evolution
Author / Creator:Kurpas, Monika Klara ; Jaksik, Roman ; Kuś, Pawel ; Kimmel, Marek
Publisher:Switzerland: MDPI AG
Journal title:Viruses, 2022-10, Vol.14 (11), p.2375
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Correction: Kurpas et al. Genomic Analysis of SARS-CoV-2 Alpha, Beta and Delta Variants of Concern Uncovers Signatures of Neutral and Non-Neutral Evolution. Viruses 2022, 14 , 2375
Author / Creator:Kurpas, Monika Klara ; Jaksik, Roman ; Kuś, Pawel ; Kimmel, Marek
Publisher:Switzerland: MDPI AG
Journal title:Viruses, 2023-04, Vol.15 (5), p.1047
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Autophagy, Apoptosis, Mitoptosis and Necrosis: Interdependence Between Those Pathways and Effects on Cancer
Author / Creator:Chaabane, Wiem ; User, Sırma D. ; El-Gazzah, Mohamed ; Jaksik, Roman ; Sajjadi, Elaheh ; Rzeszowska-Wolny, Joanna ; Łos, Marek J.
Publisher:Basel: SP Birkhäuser Verlag Basel
Journal title:Archivum Immunologiae et Therapiae Experimentalis, 2013-02, Vol.61 (1), p.43-58
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Heat shock factor 1 (HSF1) cooperates with estrogen receptor α (ERα) in the regulation of estrogen action in breast cancer cells
Author / Creator:Vydra, Natalia ; Janus, Patryk ; Kus, Paweł ; Stokowy, Tomasz ; Mrowiec, Katarzyna ; Toma-Jonik, Agnieszka ; Krzywon, Aleksandra ; Cortez, Alexander Jorge ; Wojtas, Bartosz ; Gielniewski, Bartłomiej ; Jaksik, Roman ; Kimmel, Marek ; Widlak, Wieslawa
Publisher:England: eLife Sciences Publications Ltd
Journal title:eLife, 2021-11, Vol.10
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Discrimination between human populations using a small number of differentially methylated CpG sites: a preliminary study using lymphoblastoid cell lines and peripheral blood samples of European and C...
Author / Creator:Daca-Roszak, Patrycja ; Jaksik, Roman ; Paczkowska, Julia ; Witt, Michał ; Ziętkiewicz, Ewa
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2020-10, Vol.21 (1), p.706-706, Article 706
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Gene signature of the post-Chernobyl papillary thyroid cancer
Author / Creator:Handkiewicz-Junak, Daria ; Swierniak, Michal ; Rusinek, Dagmara ; Oczko-Wojciechowska, Małgorzata ; Dom, Genevieve ; Maenhaut, Carine ; Unger, Kristian ; Detours, Vincent ; Bogdanova, Tetiana ; Thomas, Geraldine ; Likhtarov, Ilya ; Jaksik, Roman ; Kowalska, Malgorzata ; Chmielik, Ewa ; Jarzab, Michal ; Swierniak, Andrzej ; Jarzab, Barbara
Publisher:Berlin/Heidelberg: Springer Berlin Heidelberg
Journal title:European journal of nuclear medicine and molecular imaging, 2016-07, Vol.43 (7), p.1267-1277
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Heuristic Search of Exact Biclusters in Binary Data
Author / Creator:Michalak, Marcin ; Jaksik, Roman ; Ślęzak, Dominik
Publisher:Sciendo
Journal title:International journal of applied mathematics and computer science, 2020-03, Vol.30 (1), p.161-171
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Transcriptional responses to direct and indirect TGFB1 stimulation in cancerous and noncancerous mammary epithelial cells
Author / Creator:Janus, Patryk ; Kuś, Paweł ; Jaksik, Roman ; Vydra, Natalia ; Toma-Jonik, Agnieszka ; Gramatyka, Michalina ; Kurpas, Monika ; Kimmel, Marek ; Widłak, Wiesława
Publisher:England: BioMed Central Ltd
Journal title:Cell communication and signaling, 2024-10, Vol.22 (1), p.522-17, Article 522
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A mathematical model as a tool to identify microRNAs with highest impact on transcriptome changes
Author / Creator:Mura, Marzena ; Jaksik, Roman ; Lalik, Anna ; Biernacki, Krzysztof ; Kimmel, Marek ; Rzeszowska-Wolny, Joanna ; Fujarewicz, Krzysztof
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2019-02, Vol.20 (1), p.114-114, Article 114
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Circuits Regulating Superoxide and Nitric Oxide Production and Neutralization in Different Cell Types: Expression of Participating Genes and Changes Induced by Ionizing Radiation
Author / Creator:Bil, Patryk ; Ciesielska, Sylwia ; Jaksik, Roman ; Rzeszowska-Wolny, Joanna
Publisher:Basel: MDPI AG
Journal title:Antioxidants, 2020-08, Vol.9 (8), p.701
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Predicting time to relapse in acute myeloid leukemia through stochastic modeling of minimal residual disease based on clonality data
Author / Creator:Dinh, Khanh N. ; Jaksik, Roman ; Corey, Seth J. ; Kimmel, Marek
Publisher:Rochester: John Wiley & Sons, Inc
Journal title:Computational and systems oncology, 2021-09, Vol.1 (3), p.n/a
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hsa-miR-20b-5p and hsa-miR-363-3p Affect Expression of PTEN and BIM Tumor Suppressor Genes and Modulate Survival of T-ALL Cells In Vitro
Author / Creator:Drobna, Monika ; Szarzyńska, Bronisława ; Jaksik, Roman ; Sędek, Łukasz ; Kuchmiy, Anna ; Taghon, Tom ; Van Vlierberghe, Pieter ; Szczepański, Tomasz ; Witt, Michał ; Dawidowska, Małgorzata
Publisher:Switzerland: MDPI
Journal title:Cells (Basel, Switzerland), 2020-05, Vol.9 (5), p.1137
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Sources of high variance between probe signals in Affymetrix short oligonucleotide microarrays
Author / Creator:Jaksik, Roman ; Marczyk, Michal ; Polanska, Joanna ; Rzeszowska-Wolny, Joanna
Publisher:Switzerland: MDPI AG
Journal title:Sensors (Basel, Switzerland), 2013-12, Vol.14 (1), p.532-548
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ArticlesPeer ReviewedFull Text
Microarray experiments and factors which affect their reliability
Author / Creator:Jaksik, Roman ; Iwanaszko, Marta ; Rzeszowska-Wolny, Joanna ; Kimmel, Marek
Publisher:England: BioMed Central Ltd
Journal title:Biology direct, 2015-09, Vol.10 (1), p.46-46, Article 46
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Multiomics-Based Feature Extraction and Selection for the Prediction of Lung Cancer Survival
Author / Creator:Jaksik, Roman ; Szumała, Kamila ; Dinh, Khanh Ngoc ; Śmieja, Jarosław
Publisher:Switzerland: MDPI AG
Journal title:International journal of molecular sciences, 2024-04, Vol.25 (7), p.3661
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Correction: Kurpas et al. Genomic Analysis of SARS-CoV-2 Alpha, Beta and Delta Variants of Concern Uncovers Signatures of Neutral and Non-Neutral Evolution. IViruses/I 2022, I14/I, 2375
Author / Creator:Kurpas, Monika Klara ; Jaksik, Roman ; Kuś, Pawel ; Kimmel, Marek
Publisher:MDPI AG
Journal title:Viruses, 2023-04, Vol.15 (5)
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Adaptive filtering of microarray gene expression data based on Gaussian mixture decomposition
Author / Creator:Marczyk, Michal ; Jaksik, Roman ; Polanski, Andrzej ; Polanska, Joanna
Publisher:England: BioMed Central
Journal title:BMC bioinformatics, 2013-03, Vol.14 (1), p.101-101, Article 101
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Statistical Inference for the Evolutionary History of Cancer Genomes
Author / Creator:Dinh, Khanh N. ; Jaksik, Roman ; Kimmel, Marek ; Lambert, Amaury ; Tavaré, Simon
Publisher:Hayward: Institute of Mathematical Statistics
Journal title:Statistical science, 2020-02, Vol.35 (1), p.129-144
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CRISPRi for specific inhibition of miRNA clusters and miRNAs with high sequence homology

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Detection and characterization of constitutive replication origins defined by DNA polymerase epsilon

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Genomic Analysis of SARS-CoV-2 Alpha, Beta and Delta Variants of Concern Uncovers Signatures of Neutral and Non-Neutral Evolution

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Correction: Kurpas et al. Genomic Analysis of SARS-CoV-2 Alpha, Beta and Delta Variants of Concern Uncovers Signatures of Neutral and Non-Neutral Evolution. Viruses 2022, 14 , 2375

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Autophagy, Apoptosis, Mitoptosis and Necrosis: Interdependence Between Those Pathways and Effects on Cancer

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Heat shock factor 1 (HSF1) cooperates with estrogen receptor α (ERα) in the regulation of estrogen action in breast cancer cells

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Discrimination between human populations using a small number of differentially methylated CpG sites: a preliminary study using lymphoblastoid cell lines and peripheral blood samples of European and C...

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Gene signature of the post-Chernobyl papillary thyroid cancer

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Heuristic Search of Exact Biclusters in Binary Data

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Transcriptional responses to direct and indirect TGFB1 stimulation in cancerous and noncancerous mammary epithelial cells

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A mathematical model as a tool to identify microRNAs with highest impact on transcriptome changes

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Circuits Regulating Superoxide and Nitric Oxide Production and Neutralization in Different Cell Types: Expression of Participating Genes and Changes Induced by Ionizing Radiation

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Predicting time to relapse in acute myeloid leukemia through stochastic modeling of minimal residual disease based on clonality data

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hsa-miR-20b-5p and hsa-miR-363-3p Affect Expression of PTEN and BIM Tumor Suppressor Genes and Modulate Survival of T-ALL Cells In Vitro

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Sources of high variance between probe signals in Affymetrix short oligonucleotide microarrays

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Microarray experiments and factors which affect their reliability

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Multiomics-Based Feature Extraction and Selection for the Prediction of Lung Cancer Survival

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Correction: Kurpas et al. Genomic Analysis of SARS-CoV-2 Alpha, Beta and Delta Variants of Concern Uncovers Signatures of Neutral and Non-Neutral Evolution. IViruses/I 2022, I14/I, 2375

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Adaptive filtering of microarray gene expression data based on Gaussian mixture decomposition

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Statistical Inference for the Evolutionary History of Cancer Genomes

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