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Whole-genome sequencing of rifampicin-resistant Mycobacterium tuberculosis strains identifies compensatory mutations in RNA polymerase genes
Author / Creator:Comas, Iñaki ; Borrell, Sonia ; Roetzer, Andreas ; Rose, Graham ; Malla, Bijaya ; Kato-Maeda, Midori ; Galagan, James ; Niemann, Stefan ; Gagneux, Sebastien
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2012-01, Vol.44 (1), p.106-110
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Use of 16S rRNA Gene for Identification of a Broad Range of Clinically Relevant Bacterial Pathogens
Author / Creator:Srinivasan, Ramya ; Karaoz, Ulas ; Volegova, Marina ; MacKichan, Joanna ; Kato-Maeda, Midori ; Miller, Steve ; Nadarajan, Rohan ; Brodie, Eoin L. ; Lynch, Susan V.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2015-02, Vol.10 (2), p.e0117617
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Mycobacterium tuberculosis mutation rate estimates from different lineages predict substantial differences in the emergence of drug-resistant tuberculosis
Author / Creator:Ford, Christopher B ; Shah, Rupal R ; Maeda, Midori Kato ; Gagneux, Sebastien ; Murray, Megan B ; Cohen, Ted ; Johnston, James C ; Gardy, Jennifer ; Lipsitch, Marc ; Fortune, Sarah M
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2013-07, Vol.45 (7), p.784-790
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Reference set of Mycobacterium tuberculosis clinical strains: A tool for research and product development
Author / Creator:Borrell, Sònia ; Trauner, Andrej ; Brites, Daniela ; Rigouts, Leen ; Loiseau, Chloe ; Coscolla, Mireia ; Niemann, Stefan ; De Jong, Bouke ; Yeboah-Manu, Dorothy ; Kato-Maeda, Midori ; Feldmann, Julia ; Reinhard, Miriam ; Beisel, Christian ; Gagneux, Sebastien
Publisher:United States: Public Library of Science
Journal title:PloS one, 2019-03, Vol.14 (3), p.e0214088
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Likelihood-based inference for discretely observed birth-death-shift processes, with applications to evolution of mobile genetic elements
Author / Creator:Xu, Jason ; Guttorp, Peter ; Kato-Maeda, Midori ; Minin, Vladimir N.
Publisher:United States: Blackwell Publishing Ltd
Journal title:Biometrics, 2015-12, Vol.71 (4), p.1009-1021
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Variable Host-Pathogen Compatibility in Mycobacterium tuberculosis
Author / Creator:Gagneux, Sebastien ; DeRiemer, Kathryn ; Van, Tran ; Kato-Maeda, Midori ; de Jong, Bouke C. ; Narayanan, Sujatha ; Nicol, Mark ; Niemann, Stefan ; Kremer, Kristin ; Gutierrez, M. Cristina ; Hilty, Markus ; Hopewell, Philip C. ; Small, Peter M.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2006-02, Vol.103 (8), p.2869-2873
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Empiric treatment of pulmonary TB in the Xpert era: Correspondence of sputum culture, Xpert MTB/RIF, and clinical diagnoses
Author / Creator:Kendall, Emily A. ; Kamoga, Caleb ; Kitonsa, Peter J. ; Nalutaaya, Annet ; Salvatore, Phillip P. ; Robsky, Katherine ; Nakasolya, Olga ; Mukiibi, James ; Isooba, David ; Cattamanchi, Adithya ; Kato-Maeda, Midori ; Katamba, Achilles ; Dowdy, David W.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2019-07, Vol.14 (7), p.e0220251
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Use of Whole Genome Sequencing to Determine the Microevolution of Mycobacterium tuberculosis during an Outbreak
Author / Creator:Kato-Maeda, Midori ; Ho, Christine ; Passarelli, Ben ; Banaei, Niaz ; Grinsdale, Jennifer ; Flores, Laura ; Anderson, Jillian ; Murray, Megan ; Rose, Graham ; Kawamura, L. Masae ; Pourmand, Nader ; Tariq, Muhammad A. ; Gagneux, Sebastien ; Hopewell, Philip C.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2013-03, Vol.8 (3), p.e58235
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Spatial overlap links seemingly unconnected genotype-matched TB cases in rural Uganda
Author / Creator:Chamie, Gabriel ; Kato-Maeda, Midori ; Emperador, Devy M. ; Wandera, Bonnie ; Mugagga, Olive ; Crandall, John ; Janes, Michael ; Marquez, Carina ; Kamya, Moses R. ; Charlebois, Edwin D. ; Havlir, Diane V.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2018-02, Vol.13 (2), p.e0192666
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Association between Diabetes Mellitus and Tuberculosis in United States-Born and Foreign-Born Populations in San Francisco
Author / Creator:Suwanpimolkul, Gompol ; Grinsdale, Jennifer A. ; Jarlsberg, Leah G. ; Higashi, Julie ; Osmond, Dennis H. ; Hopewell, Philip C. ; Kato-Maeda, Midori
Publisher:United States: Public Library of Science
Journal title:PloS one, 2014-12, Vol.9 (12), p.e114442
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Functional and Evolutionary Genomics of Mycobacterium tuberculosis: Insights from Genomic Deletions in 100 Strains
Author / Creator:Tsolaki, Anthony G. ; Hirsh, Aaron E. ; DeRiemer, Kathryn ; Enciso, Jose Antonio ; Wong, Melissa Z. ; Hannan, Margaret ; Yves-Olivier L. Goguet de la Salmoniere ; Aman, Kumiko ; Kato-Maeda, Midori ; Small, Peter M. ; Singer, Burton H.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2004-04, Vol.101 (14), p.4865-4870
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Pyrazinamide Resistance, Mycobacterium tuberculosis Lineage and Treatment Outcomes in San Francisco, California
Author / Creator:Budzik, Jonathan M. ; Jarlsberg, Leah G. ; Higashi, Julie ; Grinsdale, Jennifer ; Hopewell, Phil C. ; Kato-Maeda, Midori ; Nahid, Payam
Publisher:United States: Public Library of Science
Journal title:PloS one, 2014-04, Vol.9 (4), p.e95645
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Influence of M. tuberculosis Lineage Variability within a Clinical Trial for Pulmonary Tuberculosis
Author / Creator:Nahid, Payam ; Bliven, Erin E. ; Kim, Elizabeth Y. ; Mac Kenzie, William R. ; Stout, Jason E. ; Diem, Lois ; Johnson, John L. ; Gagneux, Sebastien ; Hopewell, Philip C. ; Kato-Maeda, Midori
Publisher:United States: Public Library of Science
Journal title:PloS one, 2010-05, Vol.5 (5), p.e10753
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Impact of Isoniazid Resistance-Conferring Mutations on the Clinical Presentation of Isoniazid Monoresistant Tuberculosis
Author / Creator:Dantes, Raymund ; Metcalfe, John ; Kim, Elizabeth ; Kato-Maeda, Midori ; Hopewell, Philip C. ; Kawamura, Masae ; Nahid, Payam ; Cattamanchi, Adithya
Publisher:United States: Public Library of Science
Journal title:PloS one, 2012-05, Vol.7 (5), p.e37956
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Determinants of Multidrug-Resistant Tuberculosis Clusters, California, USA, 2004–2007
Author / Creator:Metcalfe, John Z. ; Kim, Elizabeth Y. ; Lin, S.-Y. Grace ; Cattamanchi, Adithya ; Oh, Peter ; Flood, Jennifer ; Hopewell, Philip C. ; Kato-Maeda, Midori
Publisher:United States: U.S. National Center for Infectious Diseases
Journal title:Emerging infectious diseases, 2010-09, Vol.16 (9), p.1403-1409
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The Role of Speciation in Positive Lowenstein-Jensen Culture Isolates from a High Tuberculosis Burden Country
Author / Creator:Worodria, William ; Anderson, Jillian ; Cattamanchi, Adithya ; Davis, J. Lucian ; den Boon, Saskia ; Andama, Alfred ; Yoo, Samuel D. ; Joloba, Moses ; Huang, Laurence ; Kato-Maeda, Midori
Publisher:United States: Public Library of Science
Journal title:PloS one, 2011-11, Vol.6 (11), p.e27017
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rpoB Gene Mutations in Rifampin-Resistant Mycobacterium tuberculosis Identified by Polymerase Chain Reaction Single-Stranded Conformational Polymorphism
Author / Creator:Bobadilla-del-Valle, Miriam ; Ponce-de-Leon, Alfredo ; Arenas-Huertero, Catalina ; Vargas-Alarcon, Gilberto ; Kato-Maeda, Midori ; Small, Peter M. ; Couary, Patricia ; Ruiz-Palacios, Guillermo M. ; Sifuentes-Osornio, Jose
Publisher:United States: U.S. National Center for Infectious Diseases
Journal title:Emerging infectious diseases, 2001-11, Vol.7 (6), p.1010-1013
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Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans
Author / Creator:Comas, Iñaki ; Coscolla, Mireia ; Luo, Tao ; Borrell, Sonia ; Holt, Kathryn E ; Kato-Maeda, Midori ; Parkhill, Julian ; Malla, Bijaya ; Berg, Stefan ; Thwaites, Guy ; Yeboah-Manu, Dorothy ; Bothamley, Graham ; Mei, Jian ; Wei, Lanhai ; Bentley, Stephen ; Harris, Simon R ; Niemann, Stefan ; Diel, Roland ; Aseffa, Abraham ; Gao, Qian ; Young, Douglas ; Gagneux, Sebastien
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2013-10, Vol.45 (10), p.1176-1182
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Tuberculosis-Related Deaths within a Well-Functioning DOTS Control Program
Author / Creator:García-García, Maria de Lourdes ; Ponce-de-León, Alfredo ; García-Sancho, Maria Cecilia ; Ferreyra-Reyes, Leticia ; Palacios-Martínez, Manuel ; Fuentes, Javier ; Kato-Maeda, Midori ; Bobadilla, Miriam ; Small, Peter ; Sifuentes-Osornio, José
Publisher:United States: U.S. National Center for Infectious Diseases
Journal title:Emerging infectious diseases, 2002-11, Vol.8 (11), p.1327-1333
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Mycobacterium tuberculosis lineage 4 comprises globally distributed and geographically restricted sublineages
Author / Creator:Stucki, David ; Brites, Daniela ; Jeljeli, Leïla ; Coscolla, Mireia ; Liu, Qingyun ; Trauner, Andrej ; Fenner, Lukas ; Rutaihwa, Liliana ; Borrell, Sonia ; Luo, Tao ; Gao, Qian ; Kato-Maeda, Midori ; Ballif, Marie ; Egger, Matthias ; Macedo, Rita ; Mardassi, Helmi ; Moreno, Milagros ; Vilanova, Griselda Tudo ; Fyfe, Janet ; Globan, Maria ; Thomas, Jackson ; Jamieson, Frances ; Guthrie, Jennifer L ; Asante-Poku, Adwoa ; Yeboah-Manu, Dorothy ; Wampande, Eddie ; Ssengooba, Willy ; Joloba, Moses ; Boom, W Henry ; Basu, Indira ; Bower, James ; Saraiva, Margarida ; Vasconcellos, Sidra E G ; Suffys, Philip ; Koch, Anastasia ; Wilkinson, Robert ; Gail-Bekker, Linda ; Malla, Bijaya ; Ley, Serej D ; Beck, Hans-Peter ; de Jong, Bouke C ; Toit, Kadri ; Sanchez-Padilla, Elisabeth ; Bonnet, Maryline ; Gil-Brusola, Ana ; Frank, Matthias ; Penlap Beng, Veronique N ; Eisenach, Kathleen ; Alani, Issam ; Ndung'u, Perpetual Wangui ; Revathi, Gunturu ; Gehre, Florian ; Akter, Suriya ; Ntoumi, Francine ; Stewart-Isherwood, Lynsey ; Ntinginya, Nyanda E ; Rachow, Andrea ; Hoelscher, Michael ; Cirillo, Daniela Maria ; Skenders, Girts ; Hoffner, Sven ; Bakonyte, Daiva ; Stakenas, Petras ; Diel, Roland ; Crudu, Valeriu ; Moldovan, Olga ; Al-Hajoj, Sahal ; Otero, Larissa ; Barletta, Francesca ; Carter, E Jane ; Diero, Lameck ; Supply, Philip ; Comas, Iñaki ; Niemann, Stefan ; Gagneux, Sebastien
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2016-12, Vol.48 (12), p.1535-1543
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Showing 1 to 20 of 48 results

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Whole-genome sequencing of rifampicin-resistant Mycobacterium tuberculosis strains identifies compensatory mutations in RNA polymerase genes

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Use of 16S rRNA Gene for Identification of a Broad Range of Clinically Relevant Bacterial Pathogens

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Mycobacterium tuberculosis mutation rate estimates from different lineages predict substantial differences in the emergence of drug-resistant tuberculosis

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Reference set of Mycobacterium tuberculosis clinical strains: A tool for research and product development

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Likelihood-based inference for discretely observed birth-death-shift processes, with applications to evolution of mobile genetic elements

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Variable Host-Pathogen Compatibility in Mycobacterium tuberculosis

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Empiric treatment of pulmonary TB in the Xpert era: Correspondence of sputum culture, Xpert MTB/RIF, and clinical diagnoses

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Use of Whole Genome Sequencing to Determine the Microevolution of Mycobacterium tuberculosis during an Outbreak

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Spatial overlap links seemingly unconnected genotype-matched TB cases in rural Uganda

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Association between Diabetes Mellitus and Tuberculosis in United States-Born and Foreign-Born Populations in San Francisco

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Functional and Evolutionary Genomics of Mycobacterium tuberculosis: Insights from Genomic Deletions in 100 Strains

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Pyrazinamide Resistance, Mycobacterium tuberculosis Lineage and Treatment Outcomes in San Francisco, California

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Influence of M. tuberculosis Lineage Variability within a Clinical Trial for Pulmonary Tuberculosis

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Impact of Isoniazid Resistance-Conferring Mutations on the Clinical Presentation of Isoniazid Monoresistant Tuberculosis

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Determinants of Multidrug-Resistant Tuberculosis Clusters, California, USA, 2004–2007

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The Role of Speciation in Positive Lowenstein-Jensen Culture Isolates from a High Tuberculosis Burden Country

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rpoB Gene Mutations in Rifampin-Resistant Mycobacterium tuberculosis Identified by Polymerase Chain Reaction Single-Stranded Conformational Polymorphism

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Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans

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Tuberculosis-Related Deaths within a Well-Functioning DOTS Control Program

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Mycobacterium tuberculosis lineage 4 comprises globally distributed and geographically restricted sublineages

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