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61 results for Koebnik,+Ralf

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Five phylogenetically close rice SWEET genes confer TAL effector-mediated susceptibility to Xanthomonas oryzae pv. oryzae
Author / Creator:Streubel, Jana ; Pesce, Céline ; Hutin, Mathilde ; Koebnik, Ralf ; Boch, Jens ; Szurek, Boris
Publisher:England: New Phytologist Trust
Journal title:The New phytologist, 2013-11, Vol.200 (3), p.808-819
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A TonB-dependent transporter is required for secretion of protease PopC across the bacterial outer membrane
Author / Creator:Gómez-Santos, Nuria ; Glatter, Timo ; Koebnik, Ralf ; Świątek-Połatyńska, Magdalena Anna ; Søgaard-Andersen, Lotte
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2019-03, Vol.10 (1), p.1360-18, Article 1360
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Targeted promoter editing for rice resistance to Xanthomonas oryzae pv. oryzae reveals differential activities for SWEET14‐inducing TAL effectors
Author / Creator:Blanvillain‐Baufumé, Servane ; Reschke, Maik ; Solé, Montserrat ; Auguy, Florence ; Doucoure, Hinda ; Szurek, Boris ; Meynard, Donaldo ; Portefaix, Murielle ; Cunnac, Sébastien ; Guiderdoni, Emmanuel ; Boch, Jens ; Koebnik, Ralf
Publisher:England: John Wiley & Sons, Inc
Journal title:Plant biotechnology journal, 2017-03, Vol.15 (3), p.306-317
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The rhizobial type III effector ErnA confers the ability to form nodules in legumes
Author / Creator:Teulet, Albin ; Busset, Nicolas ; Fardoux, Joël ; Gully, Djamel ; Chaintreuil, Clémence ; Cartieaux, Fabienne ; Jauneau, Alain ; Comorge, Virginie ; Okazaki, Shin ; Kaneko, Takakazu ; Gressent, Frédéric ; Nouwen, Nico ; Arrighi, Jean-François ; Koebnik, Ralf ; Mergaert, Peter ; Deslandes, Laurent ; Giraud, Eric
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2019-10, Vol.116 (43), p.21758-21768
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High genomic plasticity and unique features of Xanthomonas translucens pv. graminis revealed through comparative analysis of complete genome sequences
Author / Creator:Goettelmann, Florian ; Koebnik, Ralf ; Roman-Reyna, Veronica ; Studer, Bruno ; Kölliker, Roland
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2023-12, Vol.24 (1), p.741-14, Article 741
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Functional analysis of African Xanthomonas oryzae pv. oryzae TALomes reveals a new susceptibility gene in bacterial leaf blight of rice
Author / Creator:Tran, Tuan T. ; Pérez-Quintero, Alvaro L. ; Wonni, Issa ; Carpenter, Sara C. D. ; Yu, Yanhua ; Wang, Li ; Leach, Jan E. ; Verdier, Valérie ; Cunnac, Sébastien ; Bogdanove, Adam J. ; Koebnik, Ralf ; Hutin, Mathilde ; Szurek, Boris
Publisher:United States: Public Library of Science
Journal title:PLoS pathogens, 2018-06, Vol.14 (6), p.e1007092
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AnnoTALE: bioinformatics tools for identification, annotation and nomenclature of TALEs from Xanthomonas genomic sequences
Author / Creator:Grau, Jan ; Reschke, Maik ; Erkes, Annett ; Streubel, Jana ; Morgan, Richard D. ; Wilson, Geoffrey G. ; Koebnik, Ralf ; Boch, Jens
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2016-02, Vol.6 (1), p.21077-21077, Article 21077
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An atypical class of non-coding small RNAs is produced in rice leaves upon bacterial infection
Author / Creator:Reshetnyak, Ganna ; Jacobs, Jonathan M. ; Auguy, Florence ; Sciallano, Coline ; Claude, Lisa ; Medina, Clemence ; Perez-Quintero, Alvaro L. ; Comte, Aurore ; Thomas, Emilie ; Bogdanove, Adam ; Koebnik, Ralf ; Szurek, Boris ; Dievart, Anne ; Brugidou, Christophe ; Lacombe, Severine ; Cunnac, Sebastien
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2021-12, Vol.11 (1), p.24141-20, Article 24141
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Assembling highly repetitive Xanthomonas TALomes using Oxford Nanopore sequencing
Author / Creator:Erkes, Annett ; Grove, René P. ; Žarković, Milena ; Krautwurst, Sebastian ; Koebnik, Ralf ; Morgan, Richard D. ; Wilson, Geoffrey G. ; Hölzer, Martin ; Marz, Manja ; Boch, Jens ; Grau, Jan
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2023-03, Vol.24 (1), p.151-18, Article 151
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Design of a new multiplex PCR assay for rice pathogenic bacteria detection and its application to infer disease incidence and detect co-infection in rice fields in Burkina Faso
Author / Creator:Bangratz, Martine ; Wonni, Issa ; Kini, Kossi ; Sondo, Moussa ; Brugidou, Christophe ; Béna, Gilles ; Gnacko, Fatoumata ; Barro, Mariam ; Koebnik, Ralf ; Silué, Drissa ; Tollenaere, Charlotte
Publisher:United States: Public Library of Science
Journal title:PloS one, 2020-04, Vol.15 (4), p.e0232115
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Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper
Author / Creator:Potnis, Neha ; Krasileva, Ksenia ; Chow, Virginia ; Almeida, Nalvo F ; Patil, Prabhu B ; Ryan, Robert P ; Sharlach, Molly ; Behlau, Franklin ; Dow, J Max ; Momol, MT ; White, Frank F ; Preston, James F ; Vinatzer, Boris A ; Koebnik, Ralf ; Setubal, João C ; Norman, David J ; Staskawicz, Brian J ; Jones, Jeffrey B
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2011-03, Vol.12 (1), p.146-146, Article 146
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A minisatellite-based MLVA for deciphering the global epidemiology of the bacterial cassava pathogen Xanthomonas phaseoli pv. manihotis
Author / Creator:Rache, Leidy ; Blondin, Laurence ; Diaz Tatis, Paula ; Flores, Carolina ; Camargo, Andrea ; Kante, Moussa ; Wonni, Issa ; López, Camilo ; Szurek, Boris ; Dupas, Stephane ; Pruvost, Olivier ; Koebnik, Ralf ; Restrepo, Silvia ; Bernal, Adriana ; Vernière, Christian
Publisher:United States: Public Library of Science
Journal title:PloS one, 2023-05, Vol.18 (5), p.e0285491
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Comparative transcriptomics reveals a highly polymorphic Xanthomonas HrpG virulence regulon
Author / Creator:Monnens, Thomas Quiroz ; Roux, Brice ; Cunnac, Sébastien ; Charbit, Erika ; Carrère, Sébastien ; Lauber, Emmanuelle ; Jardinaud, Marie-Françoise ; Darrasse, Armelle ; Arlat, Matthieu ; Szurek, Boris ; Pruvost, Olivier ; Jacques, Marie-Agnès ; Gagnevin, Lionel ; Koebnik, Ralf ; Noël, Laurent D. ; Boulanger, Alice
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2024-08, Vol.25 (1), p.777-17, Article 777
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Clustered Regularly Interspaced Short Palindromic Repeats in Xanthomonas citri—Witnesses to a Global Expansion of a Bacterial Pathogen over Time
Author / Creator:Bellanger, Ninon ; Dereeper, Alexis ; Koebnik, Ralf
Publisher:Basel: MDPI AG
Journal title:Microorganisms (Basel), 2022-08, Vol.10 (9), p.1715
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An Improved Method for TAL Effectors DNA-Binding Sites Prediction Reveals Functional Convergence in TAL Repertoires of Xanthomonas oryzae Strains
Author / Creator:Pérez-Quintero, Alvaro L. ; Rodriguez-R, Luis M. ; Dereeper, Alexis ; López, Camilo ; Koebnik, Ralf ; Szurek, Boris ; Cunnac, Sebastien
Publisher:United States: Public Library of Science
Journal title:PloS one, 2013-07, Vol.8 (7), p.e68464
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CRISPR elements provide a new framework for the genealogy of the citrus canker pathogen Xanthomonas citri pv. citri
Author / Creator:Jeong, Kwanho ; Muñoz-Bodnar, Alejandra ; Arias Rojas, Nathalia ; Poulin, Lucie ; Rodriguez-R, Luis Miguel ; Gagnevin, Lionel ; Vernière, Christian ; Pruvost, Olivier ; Koebnik, Ralf
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2019-12, Vol.20 (1), p.917-19, Article 917
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A MLVA Genotyping Scheme for Global Surveillance of the Citrus Pathogen Xanthomonas citri pv. citri Suggests a Worldwide Geographical Expansion of a Single Genetic Lineage
Author / Creator:Pruvost, Olivier ; Magne, Maxime ; Boyer, Karine ; Leduc, Alice ; Tourterel, Christophe ; Drevet, Christine ; Ravigné, Virginie ; Gagnevin, Lionel ; Guérin, Fabien ; Chiroleu, Frédéric ; Koebnik, Ralf ; Verdier, Valérie ; Vernière, Christian
Publisher:United States: Public Library of Science
Journal title:PloS one, 2014-06, Vol.9 (6), p.e98129
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Horizontal gene transfer plays a major role in the pathological convergence of Xanthomonas lineages on common bean
Author / Creator:Chen, Nicolas W. G. ; Serres-Giardi, Laurana ; Ruh, Mylène ; Briand, Martial ; Bonneau, Sophie ; Darrasse, Armelle ; Barbe, Valérie ; Gagnevin, Lionel ; Koebnik, Ralf ; Jacques, Marie-Agnès
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2018-08, Vol.19 (1), p.606-20, Article 606
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Genomics and transcriptomics of Xanthomonas campestris species challenge the concept of core type III effectome
Author / Creator:Roux, Brice ; Bolot, Stéphanie ; Guy, Endrick ; Denancé, Nicolas ; Lautier, Martine ; Jardinaud, Marie-Françoise ; Fischer-Le Saux, Marion ; Portier, Perrine ; Jacques, Marie-Agnès ; Gagnevin, Lionel ; Pruvost, Olivier ; Lauber, Emmanuelle ; Arlat, Matthieu ; Carrère, Sébastien ; Koebnik, Ralf ; Noël, Laurent D.
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2015-11, Vol.16 (1), p.975, Article 975
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Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A
Author / Creator:Salzberg, Steven L ; Sommer, Daniel D ; Schatz, Michael C ; Phillippy, Adam M ; Rabinowicz, Pablo D ; Tsuge, Seiji ; Furutani, Ayako ; Ochiai, Hirokazu ; Delcher, Arthur L ; Kelley, David ; Madupu, Ramana ; Puiu, Daniela ; Radune, Diana ; Shumway, Martin ; Trapnell, Cole ; Aparna, Gudlur ; Jha, Gopaljee ; Pandey, Alok ; Patil, Prabhu B ; Ishihara, Hiromichi ; Meyer, Damien F ; Szurek, Boris ; Verdier, Valerie ; Koebnik, Ralf ; Dow, J Maxwell ; Ryan, Robert P ; Hirata, Hisae ; Tsuyumu, Shinji ; Won Lee, Sang ; Ronald, Pamela C ; Sonti, Ramesh V ; Van Sluys, Marie-Anne ; Leach, Jan E ; White, Frank F ; Bogdanove, Adam J
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2008-05, Vol.9 (1), p.204-204
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Showing 1 to 20 of 61 results

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Five phylogenetically close rice SWEET genes confer TAL effector-mediated susceptibility to Xanthomonas oryzae pv. oryzae

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A TonB-dependent transporter is required for secretion of protease PopC across the bacterial outer membrane

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Targeted promoter editing for rice resistance to Xanthomonas oryzae pv. oryzae reveals differential activities for SWEET14‐inducing TAL effectors

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The rhizobial type III effector ErnA confers the ability to form nodules in legumes

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High genomic plasticity and unique features of Xanthomonas translucens pv. graminis revealed through comparative analysis of complete genome sequences

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Functional analysis of African Xanthomonas oryzae pv. oryzae TALomes reveals a new susceptibility gene in bacterial leaf blight of rice

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AnnoTALE: bioinformatics tools for identification, annotation and nomenclature of TALEs from Xanthomonas genomic sequences

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An atypical class of non-coding small RNAs is produced in rice leaves upon bacterial infection

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Assembling highly repetitive Xanthomonas TALomes using Oxford Nanopore sequencing

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Design of a new multiplex PCR assay for rice pathogenic bacteria detection and its application to infer disease incidence and detect co-infection in rice fields in Burkina Faso

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Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper

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A minisatellite-based MLVA for deciphering the global epidemiology of the bacterial cassava pathogen Xanthomonas phaseoli pv. manihotis

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Comparative transcriptomics reveals a highly polymorphic Xanthomonas HrpG virulence regulon

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Clustered Regularly Interspaced Short Palindromic Repeats in Xanthomonas citri—Witnesses to a Global Expansion of a Bacterial Pathogen over Time

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An Improved Method for TAL Effectors DNA-Binding Sites Prediction Reveals Functional Convergence in TAL Repertoires of Xanthomonas oryzae Strains

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CRISPR elements provide a new framework for the genealogy of the citrus canker pathogen Xanthomonas citri pv. citri

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A MLVA Genotyping Scheme for Global Surveillance of the Citrus Pathogen Xanthomonas citri pv. citri Suggests a Worldwide Geographical Expansion of a Single Genetic Lineage

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Horizontal gene transfer plays a major role in the pathological convergence of Xanthomonas lineages on common bean

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Genomics and transcriptomics of Xanthomonas campestris species challenge the concept of core type III effectome

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Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A

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