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ArticlesPeer ReviewedFull Text
PATH - Prediction of Amyloidogenicity by Threading and Machine Learning
Author / Creator:Wojciechowski, Jakub W. ; Kotulska, Małgorzata
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2020-05, Vol.10 (1), p.7721-7721, Article 7721
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FISH Amyloid – a new method for finding amyloidogenic segments in proteins based on site specific co-occurence of aminoacids
Author / Creator:Gasior, Pawel ; Kotulska, Malgorzata
Publisher:London: BioMed Central Ltd
Journal title:BMC bioinformatics, 2014-02, Vol.15 (1), p.54-54, Article 54
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Amyloidogenic motifs revealed by n-gram analysis
Author / Creator:Burdukiewicz, Michał ; Sobczyk, Piotr ; Rödiger, Stefan ; Duda-Madej, Anna ; Mackiewicz, Paweł ; Kotulska, Małgorzata
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2017-10, Vol.7 (1), p.12961-10, Article 12961
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Automated method to differentiate between native and mirror protein models obtained from contact maps
Author / Creator:Kurczynska, Monika ; Kotulska, Malgorzata
Publisher:United States: Public Library of Science
Journal title:PloS one, 2018-05, Vol.13 (5), p.e0196993-e0196993
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PACT - Prediction of amyloid cross-interaction by threading
Author / Creator:Wojciechowski, Jakub W. ; Szczurek, Witold ; Szulc, Natalia ; Szefczyk, Monika ; Kotulska, Malgorzata
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2023-12, Vol.13 (1), p.22268-22268, Article 22268
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A spatiotemporal reconstruction of the C. elegans pharyngeal cuticle reveals a structure rich in phase-separating proteins
Author / Creator:Kamal, Muntasir ; Tokmakjian, Levon ; Knox, Jessica ; Mastrangelo, Peter ; Ji, Jingxiu ; Cai, Hao ; Wojciechowski, Jakub W ; Hughes, Michael P ; Takács, Kristóf ; Chu, Xiaoquan ; Pei, Jianfeng ; Grolmusz, Vince ; Kotulska, Malgorzata ; Forman-Kay, Julie Deborah ; Roy, Peter J
Publisher:England: eLife Science Publications, Ltd
Journal title:eLife, 2022-10, Vol.11
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Bioinformatics methods for identification of amyloidogenic peptides show robustness to misannotated training data
Author / Creator:Szulc, Natalia ; Burdukiewicz, Michał ; Gąsior-Głogowska, Marlena ; Wojciechowski, Jakub W. ; Chilimoniuk, Jarosław ; Mackiewicz, Paweł ; Šneideris, Tomas ; Smirnovas, Vytautas ; Kotulska, Malgorzata
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2021-04, Vol.11 (1), p.8934-8934, Article 8934
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Machine learning methods can replace 3D profile method in classification of amyloidogenic hexapeptides
Author / Creator:Stanislawski, Jerzy ; Kotulska, Malgorzata ; Unold, Olgierd
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2013-01, Vol.14 (1), p.21-21, Article 21
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Effect of electrochemotherapy with betulinic acid or cisplatin on regulation of heat shock proteins in metastatic human carcinoma cells in vitro
Author / Creator:Mączyńska, Justyna ; Choromańska, Anna ; Kutkowska, Justyna ; Kotulska, Małgorzata ; Zalewski, Maciej ; Zalewski, Jerzy ; Kulbacka, Julita ; Saczko, Jolanta
Publisher:Greece: Spandidos Publications
Journal title:Oncology reports, 2019-06, Vol.41 (6), p.3444-3454
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ArticlesPeer ReviewedFull Text
Water Pores in Planar Lipid Bilayers at Fast and Slow Rise of Transmembrane Voltage
Author / Creator:Maček Lebar, Alenka ; Miklavčič, Damijan ; Kotulska, Malgorzata ; Kramar, Peter
Publisher:Switzerland: MDPI AG
Journal title:Membranes (Basel), 2021-04, Vol.11 (4), p.263
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The Effect of Millisecond Pulsed Electric Fields (msPEF) on Intracellular Drug Transport with Negatively Charged Large Nanocarriers Made of Solid Lipid Nanoparticles (SLN): In Vitro Study
Author / Creator:Kulbacka, Julita ; Pucek, Agata ; Wilk, Kazimiera Anna ; Dubińska-Magiera, Magda ; Rossowska, Joanna ; Kulbacki, Marek ; Kotulska, Małgorzata
Publisher:New York: Springer US
Journal title:The Journal of membrane biology, 2016-10, Vol.249 (5), p.645-661
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Quality assessment of protein model-structures based on structural and functional similarities
Author / Creator:Konopka, Bogumil M ; Nebel, Jean-Christophe ; Kotulska, Malgorzata
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2012-09, Vol.13 (1), p.242-242, Article 242
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Natural Fluctuations of an Electropore Show Fractional Lévy Stable Motion
Author / Creator:Kotulska, Malgorzata
Publisher:United States: Elsevier Inc
Journal title:Biophysical journal, 2007-04, Vol.92 (7), p.2412-2421
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On the amyloid datasets used for training PAFIG--how (not) to extend the experimental dataset of hexapeptides
Author / Creator:Kotulska, Malgorzata ; Unold, Olgierd
Publisher:England: BioMed Central
Journal title:BMC bioinformatics, 2013-12, Vol.14 (1), p.351-351, Article 351
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Variability of Amyloid Propensity in Imperfect Repeats of CsgA Protein of Salmonella enterica and Escherichia coli
Author / Creator:Szulc, Natalia ; Gąsior-Głogowska, Marlena ; Wojciechowski, Jakub W. ; Szefczyk, Monika ; Żak, Andrzej M. ; Burdukiewicz, Michał ; Kotulska, Malgorzata
Publisher:Basel: MDPI AG
Journal title:International journal of molecular sciences, 2021-05, Vol.22 (10), p.5127
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ArticlesPeer ReviewedFull Text
Automated Procedure for Contact-Map-Based Protein Structure Reconstruction
Author / Creator:Konopka, Bogumil M. ; Ciombor, Marika ; Kurczynska, Monika ; Kotulska, Malgorzata
Publisher:New York: Springer US
Journal title:The Journal of membrane biology, 2014-05, Vol.247 (5), p.409-420
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ArticlesPeer ReviewedFull Text
FISH Amyloid - a new method for finding amyloidogenic segments in proteins based on site specific co-occurrence of aminoacids
Author / Creator:Gasior, Pawel ; Kotulska, Malgorzata
Publisher:England
Journal title:BMC bioinformatics, 2014-02, Vol.15, p.54-54
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ArticlesFull Text
Correlated mutations distinguish misfolded and properly folded proteins
Author / Creator:Woźniak, Paweł ; Kotulska, Malgorzata ; Vriend, Gert
Publisher:San Diego: PeerJ, Inc
Journal title:PeerJ preprints, 2017-01
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ArticlesPeer ReviewedFull Text
Electric Field-Assisted Delivery of Photofrin to Human Breast Carcinoma Cells
Author / Creator:Wezgowiec, Joanna ; Derylo, Maria B. ; Teissie, Justin ; Orio, Julie ; Rols, Marie-Pierre ; Kulbacka, Julita ; Saczko, Jolanta ; Kotulska, Malgorzata
Publisher:New York: Springer US
Journal title:The Journal of membrane biology, 2013-10, Vol.246 (10), p.725-735
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Molecular-Level Characterization of Lipid Membrane Electroporation using Linearly Rising Current
Author / Creator:Kramar, Peter ; Delemotte, Lucie ; Maček Lebar, Alenka ; Kotulska, Malgorzata ; Tarek, Mounir ; Miklavčič, Damijan
Publisher:New York: Springer-Verlag
Journal title:The Journal of membrane biology, 2012-10, Vol.245 (10), p.651-659
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PATH - Prediction of Amyloidogenicity by Threading and Machine Learning

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FISH Amyloid – a new method for finding amyloidogenic segments in proteins based on site specific co-occurence of aminoacids

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Amyloidogenic motifs revealed by n-gram analysis

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Automated method to differentiate between native and mirror protein models obtained from contact maps

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PACT - Prediction of amyloid cross-interaction by threading

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A spatiotemporal reconstruction of the C. elegans pharyngeal cuticle reveals a structure rich in phase-separating proteins

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Bioinformatics methods for identification of amyloidogenic peptides show robustness to misannotated training data

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Machine learning methods can replace 3D profile method in classification of amyloidogenic hexapeptides

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Effect of electrochemotherapy with betulinic acid or cisplatin on regulation of heat shock proteins in metastatic human carcinoma cells in vitro

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Water Pores in Planar Lipid Bilayers at Fast and Slow Rise of Transmembrane Voltage

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The Effect of Millisecond Pulsed Electric Fields (msPEF) on Intracellular Drug Transport with Negatively Charged Large Nanocarriers Made of Solid Lipid Nanoparticles (SLN): In Vitro Study

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Quality assessment of protein model-structures based on structural and functional similarities

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Natural Fluctuations of an Electropore Show Fractional Lévy Stable Motion

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On the amyloid datasets used for training PAFIG--how (not) to extend the experimental dataset of hexapeptides

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Variability of Amyloid Propensity in Imperfect Repeats of CsgA Protein of Salmonella enterica and Escherichia coli

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Automated Procedure for Contact-Map-Based Protein Structure Reconstruction

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FISH Amyloid - a new method for finding amyloidogenic segments in proteins based on site specific co-occurrence of aminoacids

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Correlated mutations distinguish misfolded and properly folded proteins

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Electric Field-Assisted Delivery of Photofrin to Human Breast Carcinoma Cells

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Molecular-Level Characterization of Lipid Membrane Electroporation using Linearly Rising Current

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