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ArticlesPeer ReviewedFull Text
Single-cell chromatin immunocleavage sequencing (scChIC-seq) to profile histone modification
Author / Creator:Ku, Wai Lim ; Nakamura, Kosuke ; Gao, Weiwu ; Cui, Kairong ; Hu, Gangqing ; Tang, Qingsong ; Ni, Bing ; Zhao, Keji
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2019-04, Vol.16 (4), p.323-325
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Mapping histone modifications in low cell number and single cells using antibody-guided chromatin tagmentation (ACT-seq)
Author / Creator:Carter, Benjamin ; Ku, Wai Lim ; Kang, Jee Youn ; Hu, Gangqing ; Perrie, Jonathan ; Tang, Qingsong ; Zhao, Keji
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2019-08, Vol.10 (1), p.3747-3747, Article 3747
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TGF-β induces ST2 and programs ILC2 development
Author / Creator:Wang, Li ; Tang, Jun ; Yang, Xia ; Zanvit, Peter ; Cui, Kairong ; Ku, Wai Lim ; Jin, Wenwen ; Zhang, Dunfang ; Goldberg, Nathan ; Cain, Alexander ; Ni, Bing ; Zhao, Keji ; Wu, Yuzhang ; Chen, WanJun
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2020-01, Vol.11 (1), p.35-35, Article 35
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Topoisomerase 3β knockout mice show transcriptional and behavioural impairments associated with neurogenesis and synaptic plasticity
Author / Creator:Joo, Yuyoung ; Xue, Yutong ; Wang, Yue ; McDevitt, Ross A. ; Sah, Nirnath ; Bossi, Simone ; Su, Shuaikun ; Lee, Seung Kyu ; Peng, Wei ; Xie, Aoji ; Zhang, Yongqing ; Ding, Yi ; Ku, Wai Lim ; Ghosh, Soumita ; Fishbein, Kenneth ; Shen, Weiping ; Spencer, Richard ; Becker, Kevin ; Zhao, Keji ; Mattson, Mark P. ; van Praag, Henriette ; Sharov, Alexei ; Wang, Weidong
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2020-06, Vol.11 (1), p.3143-3143, Article 3143
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Author Correction: Mapping histone modifications in low cell number and single cells using antibody-guided chromatin tagmentation (ACT-seq)
Author / Creator:Carter, Benjamin ; Ku, Wai Lim ; Kang, Jee Youn ; Hu, Gangqing ; Perrie, Jonathan ; Tang, Qingsong ; Zhao, Keji
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2020-09, Vol.11 (1), p.4424-4424, Article 4424
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Smarca4 ATPase mutations disrupt direct eviction of PRC1 from chromatin
Author / Creator:Stanton, Benjamin Z ; Hodges, Courtney ; Calarco, Joseph P ; Braun, Simon M G ; Ku, Wai Lim ; Kadoch, Cigall ; Zhao, Keji ; Crabtree, Gerald R
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2017-02, Vol.49 (2), p.282-288
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Evaluating Machine Learning Stability in Predicting Depression and Anxiety Amidst Subjective Response Errors
Author / Creator:Ku, Wai Lim ; Min, Hua
Publisher:Switzerland: MDPI AG
Journal title:Healthcare (Basel), 2024-03, Vol.12 (6), p.625
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Dominant-negative SMARCA4 mutants alter the accessibility landscape of tissue-unrestricted enhancers
Author / Creator:Hodges, H. Courtney ; Stanton, Benjamin Z. ; Cermakova, Katerina ; Chang, Chiung-Ying ; Miller, Erik L. ; Kirkland, Jacob G. ; Ku, Wai Lim ; Veverka, Vaclav ; Zhao, Keji ; Crabtree, Gerald R.
Publisher:New York: Nature Publishing Group US
Journal title:Nature structural & molecular biology, 2018-01, Vol.25 (1), p.61-72
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Acute depletion of BRG1 reveals its primary function as an activator of transcription
Author / Creator:Ren, Gang ; Ku, Wai Lim ; Ge, Guangzhe ; Hoffman, Jackson A. ; Kang, Jee Youn ; Tang, Qingsong ; Cui, Kairong ; He, Yong ; Guan, Yukun ; Gao, Bin ; Liu, Chengyu ; Archer, Trevor K. ; Zhao, Keji
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2024-05, Vol.15 (1), p.4561-16, Article 4561
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A single N-terminal amino acid determines the distinct roles of histones H3 and H3.3 in the Drosophila male germline stem cell lineage
Author / Creator:Chandrasekhara, Chinmayi ; Ranjan, Rajesh ; Urban, Jennifer A. ; Davis, Brendon E. M. ; Ku, Wai Lim ; Snedeker, Jonathan ; Zhao, Keji ; Chen, Xin
Publisher:United States: Public Library of Science
Journal title:PLoS biology, 2023-05, Vol.21 (5), p.e3002098-e3002098
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Opposing functions of circadian protein DBP and atypical E2F family E2F8 in anti-tumor Th9 cell differentiation
Author / Creator:Park, Sang-A ; Lim, Yun-Ji ; Ku, Wai Lim ; Zhang, Dunfang ; Cui, Kairong ; Tang, Liu-Ya ; Chia, Cheryl ; Zanvit, Peter ; Chen, Zuojia ; Jin, Wenwen ; Wang, Dandan ; Xu, Junji ; Liu, Ousheng ; Wang, Fu ; Cain, Alexander ; Guo, Nancy ; Nakatsukasa, Hiroko ; Wu, Chuan ; Zhang, Ying E. ; Zhao, Keji ; Chen, WanJun
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2022-10, Vol.13 (1), p.6069-6069, Article 6069
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Topoisomerase 3β interacts with RNAi machinery to promote heterochromatin formation and transcriptional silencing in Drosophila
Author / Creator:Lee, Seung Kyu ; Xue, Yutong ; Shen, Weiping ; Zhang, Yongqing ; Joo, Yuyoung ; Ahmad, Muzammil ; Chinen, Madoka ; Ding, Yi ; Ku, Wai Lim ; De, Supriyo ; Lehrmann, Elin ; Becker, Kevin G. ; Lei, Elissa P. ; Zhao, Keji ; Zou, Sige ; Sharov, Alexei ; Wang, Weidong
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2018-11, Vol.9 (1), p.4946-17, Article 4946
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Concurrent mapping of multiple epigenetic marks and co-occupancy using ACT2-seq
Author / Creator:Carter, Benjamin ; Ku, Wai Lim ; Pelt, Joe ; Zhao, Keji
Publisher:London: BioMed Central Ltd
Journal title:Cell & bioscience, 2021-12, Vol.11 (1), p.1-198, Article 198
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Genome-wide identification of histone H2A and histone variant H2A.Z-interacting proteins by bPPI-seq
Author / Creator:Zhang, Yi ; Ku, Wai Lim ; Liu, Shuai ; Cui, Kairong ; Jin, Wenfei ; Tang, Qingsong ; Lu, William ; Ni, Bing ; Zhao, Keji
Publisher:London: Nature Publishing Group UK
Journal title:Cell research, 2017-10, Vol.27 (10), p.1258-1274
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scPCOR-seq enables co-profiling of chromatin occupancy and RNAs in single cells
Author / Creator:Pan, Lixia ; Ku, Wai Lim ; Tang, Qingsong ; Cao, Yaqiang ; Zhao, Keji
Publisher:London: Nature Publishing Group UK
Journal title:Communications biology, 2022-07, Vol.5 (1), p.678-678, Article 678
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Modeling the Dynamics of Bivalent Histone Modifications
Author / Creator:Ku, Wai Lim ; Girvan, Michelle ; Yuan, Guo-Cheng ; Sorrentino, Francesco ; Ott, Edward
Publisher:United States: Public Library of Science
Journal title:PloS one, 2013-11, Vol.8 (11), p.e77944-e77944
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Interpreting Patterns of Gene Expression: Signatures of Coregulation, the Data Processing Inequality, and Triplet Motifs
Author / Creator:Ku, Wai Lim ; Duggal, Geet ; Li, Yuan ; Girvan, Michelle ; Ott, Edward
Publisher:United States: Public Library of Science
Journal title:PloS one, 2012-02, Vol.7 (2), p.e31969-e31969
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The Drosophila histone methyl-transferase SET1 coordinates multiple signaling pathways in regulating male germline stem cell maintenance and differentiation
Author / Creator:Vidaurre, Velinda ; Song, Annabelle ; Li, Taibo ; Wai Lim Ku ; Zhao, Keji ; Jiang, Qian ; Chen, Xin
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2024-02
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Mapping Histone Modifications in Low Cell Number and Single Cells Using Antibody-guided Chromatin Tagmentation (ACT-seq)
Author / Creator:Carter, Benjamin ; Wai Lim Ku ; Tang, Qingsong ; Jee Youn Kang ; Zhao, Keji
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2019-03
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Dominant-negative SMARCA4 missense mutations alter the accessibility landscape of tissue-unrestricted enhancers
Author / Creator:Hodges, H. Courtney ; Stanton, Benjamin Z. ; Cermakova, Katerina ; Chang, Chiung-Ying ; Miller, Erik L. ; Kirkland, Jacob G. ; Ku, Wai Lim ; Veverka, Vaclav ; Zhao, Keji ; Crabtree, Gerald R.
Journal title:Nature structural & molecular biology, 2017-12, Vol.25 (1), p.61-72
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Showing 1 to 20 of 24 results

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Single-cell chromatin immunocleavage sequencing (scChIC-seq) to profile histone modification

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Mapping histone modifications in low cell number and single cells using antibody-guided chromatin tagmentation (ACT-seq)

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TGF-β induces ST2 and programs ILC2 development

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Topoisomerase 3β knockout mice show transcriptional and behavioural impairments associated with neurogenesis and synaptic plasticity

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Author Correction: Mapping histone modifications in low cell number and single cells using antibody-guided chromatin tagmentation (ACT-seq)

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Smarca4 ATPase mutations disrupt direct eviction of PRC1 from chromatin

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Evaluating Machine Learning Stability in Predicting Depression and Anxiety Amidst Subjective Response Errors

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Dominant-negative SMARCA4 mutants alter the accessibility landscape of tissue-unrestricted enhancers

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Acute depletion of BRG1 reveals its primary function as an activator of transcription

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A single N-terminal amino acid determines the distinct roles of histones H3 and H3.3 in the Drosophila male germline stem cell lineage

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Opposing functions of circadian protein DBP and atypical E2F family E2F8 in anti-tumor Th9 cell differentiation

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Topoisomerase 3β interacts with RNAi machinery to promote heterochromatin formation and transcriptional silencing in Drosophila

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Concurrent mapping of multiple epigenetic marks and co-occupancy using ACT2-seq

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Genome-wide identification of histone H2A and histone variant H2A.Z-interacting proteins by bPPI-seq

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scPCOR-seq enables co-profiling of chromatin occupancy and RNAs in single cells

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Modeling the Dynamics of Bivalent Histone Modifications

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Interpreting Patterns of Gene Expression: Signatures of Coregulation, the Data Processing Inequality, and Triplet Motifs

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The Drosophila histone methyl-transferase SET1 coordinates multiple signaling pathways in regulating male germline stem cell maintenance and differentiation

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Mapping Histone Modifications in Low Cell Number and Single Cells Using Antibody-guided Chromatin Tagmentation (ACT-seq)

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Dominant-negative SMARCA4 missense mutations alter the accessibility landscape of tissue-unrestricted enhancers

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