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ArticlesPeer ReviewedFull Text
ICAN: Interpretable cross-attention network for identifying drug and target protein interactions
Author / Creator:Kurata, Hiroyuki ; Tsukiyama, Sho
Publisher:San Francisco: Public Library of Science
Journal title:PloS one, 2022-10, Vol.17 (10), p.e0276609-e0276609
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iACVP: markedly enhanced identification of anti-coronavirus peptides using a dataset-specific word2vec model
Author / Creator:Kurata, Hiroyuki ; Tsukiyama, Sho ; Manavalan, Balachandran
Publisher:Oxford: Oxford University Press
Journal title:Briefings in bioinformatics, 2022-07, Vol.23 (4)
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GPSuc: Global Prediction of Generic and Species-specific Succinylation Sites by aggregating multiple sequence features
Author / Creator:Hasan, Md. Mehedi ; Kurata, Hiroyuki
Publisher:United States: Public Library of Science
Journal title:PloS one, 2018-10, Vol.13 (10), p.e0200283-e0200283
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i6mA-Fuse: improved and robust prediction of DNA 6 mA sites in the Rosaceae genome by fusing multiple feature representation
Author / Creator:Hasan, Md. Mehedi ; Manavalan, Balachandran ; Shoombuatong, Watshara ; Khatun, Mst. Shamima ; Kurata, Hiroyuki
Publisher:Dordrecht: Springer Netherlands
Journal title:Plant molecular biology, 2020-05, Vol.103 (1-2), p.225-234
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IRC-Fuse: improved and robust prediction of redox-sensitive cysteine by fusing of multiple feature representations
Author / Creator:Hasan, Md Mehedi ; Alam, Md Ashad ; Shoombuatong, Watshara ; Kurata, Hiroyuki
Publisher:Cham: Springer International Publishing
Journal title:Journal of computer-aided molecular design, 2021-03, Vol.35 (3), p.315-323
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ProIn-Fuse: improved and robust prediction of proinflammatory peptides by fusing of multiple feature representations
Author / Creator:Khatun, Mst. Shamima ; Hasan, Md. Mehedi ; Shoombuatong, Watshara ; Kurata, Hiroyuki
Publisher:Cham: Springer International Publishing
Journal title:Journal of computer-aided molecular design, 2020-12, Vol.34 (12), p.1229-1236
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NeuroPred-FRL: an interpretable prediction model for identifying neuropeptide using feature representation learning
Author / Creator:Hasan, Md Mehedi ; Alam, Md Ashad ; Shoombuatong, Watshara ; Deng, Hong-Wen ; Manavalan, Balachandran ; Kurata, Hiroyuki
Publisher:England
Journal title:Briefings in bioinformatics, 2021-11, Vol.22 (6)
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BERT6mA: prediction of DNA N6-methyladenine site using deep learning-based approaches
Author / Creator:Tsukiyama, Sho ; Hasan, Md Mehedi ; Deng, Hong-Wen ; Kurata, Hiroyuki
Publisher:England: Oxford University Press
Journal title:Briefings in bioinformatics, 2022-03, Vol.23 (2)
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Meta-2OM: A multi-classifier meta-model for the accurate prediction of RNA 2′-O-methylation sites in human RNA
Author / Creator:Harun-Or-Roshid, Md ; Pham, Nhat Truong ; Manavalan, Balachandran ; Kurata, Hiroyuki
Publisher:United States: Public Library of Science
Journal title:PloS one, 2024-06, Vol.19 (6), p.e0305406
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PredIL13: Stacking a variety of machine and deep learning methods with ESM-2 language model for identifying IL13-inducing peptides
Author / Creator:Kurata, Hiroyuki ; Harun-Or-Roshid, Md ; Tsukiyama, Sho ; Maeda, Kazuhiro
Publisher:United States: Public Library of Science
Journal title:PloS one, 2024-08, Vol.19 (8), p.e0309078
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MLAGO: machine learning-aided global optimization for Michaelis constant estimation of kinetic modeling
Author / Creator:Maeda, Kazuhiro ; Hatae, Aoi ; Sakai, Yukie ; Boogerd, Fred C. ; Kurata, Hiroyuki
Publisher:London: BioMed Central Ltd
Journal title:BMC bioinformatics, 2022-11, Vol.23 (1), p.1-455, Article 455
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Fabrication and Characterisation of Organic EL Devices in the Presence of Cyclodextrin as an Interlayer
Author / Creator:Hara, Michihiro ; Umeda, Takao ; Kurata, Hiroyuki
Publisher:Switzerland: MDPI AG
Journal title:Sensors (Basel, Switzerland), 2021-05, Vol.21 (11), p.3666
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Development of an accurate kinetic model for the central carbon metabolism of Escherichia coli
Author / Creator:Jahan, Nusrat ; Maeda, Kazuhiro ; Matsuoka, Yu ; Sugimoto, Yurie ; Kurata, Hiroyuki
Publisher:England: BioMed Central Ltd
Journal title:Microbial cell factories, 2016-06, Vol.15 (1), p.112-112, Article 112
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Computational identification of microbial phosphorylation sites by the enhanced characteristics of sequence information
Author / Creator:Hasan, Md. Mehedi ; Rashid, Md. Mamunur ; Khatun, Mst. Shamima ; Kurata, Hiroyuki
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2019-06, Vol.9 (1), p.8258-8258, Article 8258
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Asymmetric Amination of meso-Epoxide with Vegetable Powder as a Low-Toxicity Catalyst
Author / Creator:Takeuchi, Yuki ; Asano, Tatsuhiro ; Tsuzaki, Kazuya ; Wada, Koichi ; Kurata, Hiroyuki
Publisher:Switzerland: MDPI AG
Journal title:Molecules (Basel, Switzerland), 2020-07, Vol.25 (14), p.3197
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ArticlesPeer ReviewedFull Text
PredNTS: Improved and Robust Prediction of Nitrotyrosine Sites by Integrating Multiple Sequence Features
Author / Creator:Nilamyani, Andi Nur ; Auliah, Firda Nurul ; Moni, Mohammad Ali ; Shoombuatong, Watshara ; Hasan, Md Mehedi ; Kurata, Hiroyuki
Publisher:Switzerland: MDPI
Journal title:International journal of molecular sciences, 2021-03, Vol.22 (5), p.2704
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A prediction model of functional outcome at 6 months using clinical findings of a person with traumatic spinal cord injury at 1 month after injury
Author / Creator:Ariji, Yuto ; Hayashi, Tetsuo ; Ideta, Ryosuke ; Koga, Ryuichiro ; Murai, Satoshi ; Towatari, Fumihiro ; Terashi, Yoshiteru ; Sakai, Hiroaki ; Kurata, Hiroyuki ; Maeda, Takeshi
Publisher:London: Nature Publishing Group UK
Journal title:Spinal cord, 2020-11, Vol.58 (11), p.1158-1165
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ArticlesPeer ReviewedFull Text
PUP-Fuse: Prediction of Protein Pupylation Sites by Integrating Multiple Sequence Representations
Author / Creator:Auliah, Firda Nurul ; Nilamyani, Andi Nur ; Shoombuatong, Watshara ; Alam, Md Ashad ; Hasan, Md Mehedi ; Kurata, Hiroyuki
Publisher:Switzerland: MDPI AG
Journal title:International journal of molecular sciences, 2021-02, Vol.22 (4), p.2120
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Large-Scale Assessment of Bioinformatics Tools for Lysine Succinylation Sites
Author / Creator:Hasan, Md. Mehedi ; Khatun, Mst. Shamima ; Kurata, Hiroyuki
Publisher:Switzerland: MDPI AG
Journal title:Cells (Basel, Switzerland), 2019-01, Vol.8 (2), p.95
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Robustness analysis of the detailed kinetic model of an ErbB signaling network by using dynamic sensitivity
Author / Creator:Masunaga, Hiroyuki ; Sugimoto, Yurie ; Magi, Shigeyuki ; Itasaki, Ryunosuke ; Okada-Hatakeyama, Mariko ; Kurata, Hiroyuki
Publisher:United States: Public Library of Science
Journal title:PloS one, 2017-05, Vol.12 (5), p.e0178250-e0178250
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Showing 1 to 20 of 66 results

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ICAN: Interpretable cross-attention network for identifying drug and target protein interactions

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iACVP: markedly enhanced identification of anti-coronavirus peptides using a dataset-specific word2vec model

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GPSuc: Global Prediction of Generic and Species-specific Succinylation Sites by aggregating multiple sequence features

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i6mA-Fuse: improved and robust prediction of DNA 6 mA sites in the Rosaceae genome by fusing multiple feature representation

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IRC-Fuse: improved and robust prediction of redox-sensitive cysteine by fusing of multiple feature representations

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ProIn-Fuse: improved and robust prediction of proinflammatory peptides by fusing of multiple feature representations

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NeuroPred-FRL: an interpretable prediction model for identifying neuropeptide using feature representation learning

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BERT6mA: prediction of DNA N6-methyladenine site using deep learning-based approaches

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Meta-2OM: A multi-classifier meta-model for the accurate prediction of RNA 2′-O-methylation sites in human RNA

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PredIL13: Stacking a variety of machine and deep learning methods with ESM-2 language model for identifying IL13-inducing peptides

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MLAGO: machine learning-aided global optimization for Michaelis constant estimation of kinetic modeling

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Fabrication and Characterisation of Organic EL Devices in the Presence of Cyclodextrin as an Interlayer

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Development of an accurate kinetic model for the central carbon metabolism of Escherichia coli

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Computational identification of microbial phosphorylation sites by the enhanced characteristics of sequence information

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Asymmetric Amination of meso-Epoxide with Vegetable Powder as a Low-Toxicity Catalyst

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PredNTS: Improved and Robust Prediction of Nitrotyrosine Sites by Integrating Multiple Sequence Features

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A prediction model of functional outcome at 6 months using clinical findings of a person with traumatic spinal cord injury at 1 month after injury

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PUP-Fuse: Prediction of Protein Pupylation Sites by Integrating Multiple Sequence Representations

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Large-Scale Assessment of Bioinformatics Tools for Lysine Succinylation Sites

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Robustness analysis of the detailed kinetic model of an ErbB signaling network by using dynamic sensitivity

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