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ArticlesPeer ReviewedFull Text
Image-based consensus molecular subtyping in rectal cancer biopsies and response to neoadjuvant chemoradiotherapy
Author / Creator:Lafarge, Maxime W. ; Domingo, Enric ; Sirinukunwattana, Korsuk ; Wood, Ruby ; Samuel, Leslie ; Murray, Graeme ; Richman, Susan D. ; Blake, Andrew ; Sebag-Montefiore, David ; Gollins, Simon ; Klieser, Eckhard ; Neureiter, Daniel ; Huemer, Florian ; Greil, Richard ; Dunne, Philip ; Quirke, Philip ; Weiss, Lukas ; Rittscher, Jens ; Maughan, Tim ; Koelzer, Viktor H.
Publisher:London: Nature Publishing Group UK
Journal title:NPJ precision oncology, 2024-04, Vol.8 (1), p.89-11, Article 89
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ArticlesPeer ReviewedFull Text
Pathway level subtyping identifies a slow-cycling biological phenotype associated with poor clinical outcomes in colorectal cancer
Author / Creator:Malla, Sudhir B. ; Byrne, Ryan M. ; Lafarge, Maxime W. ; Corry, Shania M. ; Fisher, Natalie C. ; Tsantoulis, Petros K. ; Mills, Megan L. ; Ridgway, Rachel A. ; Lannagan, Tamsin R. M. ; Najumudeen, Arafath K. ; Gilroy, Kathryn L. ; Amirkhah, Raheleh ; Maguire, Sarah L. ; Mulholland, Eoghan J. ; Belnoue-Davis, Hayley L. ; Grassi, Elena ; Viviani, Marco ; Rogan, Emily ; Redmond, Keara L. ; Sakhnevych, Svetlana ; McCooey, Aoife J. ; Bull, Courtney ; Hoey, Emily ; Sinevici, Nicoleta ; Hall, Holly ; Ahmaderaghi, Baharak ; Domingo, Enric ; Blake, Andrew ; Richman, Susan D. ; Isella, Claudio ; Miller, Crispin ; Bertotti, Andrea ; Trusolino, Livio ; Loughrey, Maurice B. ; Kerr, Emma M. ; Tejpar, Sabine ; Maughan, Timothy S. ; Lawler, Mark ; Campbell, Andrew D. ; Leedham, Simon J. ; Koelzer, Viktor H. ; Sansom, Owen J. ; Dunne, Philip D.
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2024-03, Vol.56 (3), p.458-472
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ArticlesPeer ReviewedFull Text
Author Correction: Pathway level subtyping identifies a slow-cycling biological phenotype associated with poor clinical outcomes in colorectal cancer
Author / Creator:Malla, Sudhir B. ; Byrne, Ryan M. ; Lafarge, Maxime W. ; Corry, Shania M. ; Fisher, Natalie C. ; Tsantoulis, Petros K. ; Mills, Megan L. ; Ridgway, Rachel A. ; Lannagan, Tamsin R. M. ; Najumudeen, Arafath K. ; Gilroy, Kathryn L. ; Amirkhah, Raheleh ; Maguire, Sarah L. ; Mulholland, Eoghan J. ; Belnoue-Davis, Hayley L. ; Grassi, Elena ; Viviani, Marco ; Rogan, Emily ; Redmond, Keara L. ; Sakhnevych, Svetlana ; McCooey, Aoife J. ; Bull, Courtney ; Hoey, Emily ; Sinevici, Nicoleta ; Hall, Holly ; Ahmaderaghi, Baharak ; Domingo, Enric ; Blake, Andrew ; Richman, Susan D. ; Isella, Claudio ; Miller, Crispin ; Bertotti, Andrea ; Trusolino, Livio ; Loughrey, Maurice B. ; Kerr, Emma M. ; Tejpar, Sabine ; Maughan, Timothy S. ; Lawler, Mark ; Campbell, Andrew D. ; Leedham, Simon J. ; Koelzer, Viktor H. ; Sansom, Owen J. ; Dunne, Philip D.
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2024-06, Vol.56 (6), p.1321-1321
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ArticlesFull Text
Fine-Grained Hard Negative Mining: Generalizing Mitosis Detection with a Fifth of the MIDOG 2022 Dataset
Author / Creator:Lafarge, Maxime W ; Koelzer, Viktor H
Publisher:Ithaca: Cornell University Library, arXiv.org
Journal title:arXiv.org, 2023-01
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ArticlesFull Text
Rotation Invariance and Extensive Data Augmentation: a strategy for the Mitosis Domain Generalization (MIDOG) Challenge
Author / Creator:Lafarge, Maxime W ; Koelzer, Viktor H
Publisher:Ithaca: Cornell University Library, arXiv.org
Journal title:arXiv.org, 2021-09
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ArticlesFull Text
Domain generalization across tumor types, laboratories, and species -- insights from the 2022 edition of the Mitosis Domain Generalization Challenge
Author / Creator:Aubreville, Marc ; Stathonikos, Nikolas ; Donovan, Taryn A ; Klopfleisch, Robert ; Ganz, Jonathan ; Ammeling, Jonas ; Wilm, Frauke ; Mitko Veta ; Jabari, Samir ; Eckstein, Markus ; Annuscheit, Jonas ; Krumnow, Christian ; Bozaba, Engin ; Sercan Cayir ; Gu, Hongyan ; Chen, Xiang 'Anthony' ; Jahanifar, Mostafa ; Shephard, Adam ; Kondo, Satoshi ; Kasai, Satoshi ; Kotte, Sujatha ; Saipradeep, V G ; Lafarge, Maxime W ; Koelzer, Viktor H ; Wang, Ziyue ; Zhang, Yongbing ; Sen, Yang ; Wang, Xiyue ; Breininger, Katharina ; Bertram, Christof A
Publisher:Ithaca: Cornell University Library, arXiv.org
Journal title:arXiv.org, 2024-01
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ArticlesFull Text
Multi-task learning for tissue segmentation and tumor detection in colorectal cancer histology slides
Author / Creator:Schoenpflug, Lydia A ; Lafarge, Maxime W ; Frei, Anja L ; Koelzer, Viktor H
Publisher:Ithaca: Cornell University Library, arXiv.org
Journal title:arXiv.org, 2023-04
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ArticlesFull Text
Orientation-Disentangled Unsupervised Representation Learning for Computational Pathology
Author / Creator:Lafarge, Maxime W ; Josien P W Pluim ; Mitko Veta
Publisher:Ithaca: Cornell University Library, arXiv.org
Journal title:arXiv.org, 2020-08
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ArticlesFull Text
Mitosis domain generalization in histopathology images -- The MIDOG challenge
Author / Creator:Aubreville, Marc ; Stathonikos, Nikolas ; Bertram, Christof A ; Klopleisch, Robert ; Natalie ter Hoeve ; Ciompi, Francesco ; Wilm, Frauke ; Marzahl, Christian ; Donovan, Taryn A ; Maier, Andreas ; Breen, Jack ; Ravikumar, Nishant ; Chung, Youjin ; Park, Jinah ; Nateghi, Ramin ; Pourakpour, Fattaneh ; Fick, Rutger H J ; Saima Ben Hadj ; Jahanifar, Mostafa ; Rajpoot, Nasir ; Dexl, Jakob ; Wittenberg, Thomas ; Kondo, Satoshi ; Lafarge, Maxime W ; Koelzer, Viktor H ; Liang, Jingtang ; Wang, Yubo ; Long, Xi ; Liu, Jingxin ; Razavi, Salar ; Khademi, April ; Sen, Yang ; Wang, Xiyue ; Mitko Veta ; Breininger, Katharina
Publisher:Ithaca: Cornell University Library, arXiv.org
Journal title:arXiv.org, 2022-04
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ArticlesFull Text
CohortFinder: an open-source tool for data-driven partitioning of biomedical image cohorts to yield robust machine learning models
Author / Creator:Fan, Fan ; Martinez, Georgia ; Desilvio, Thomas ; Shin, John ; Chen, Yijiang ; Wang, Bangchen ; Ozeki, Takaya ; Lafarge, Maxime W ; Koelzer, Viktor H ; Barisoni, Laura ; Madabhushi, Anant ; Viswanath, Satish E ; Janowczyk, Andrew
Publisher:Ithaca: Cornell University Library, arXiv.org
Journal title:arXiv.org, 2023-07
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ArticlesFull Text
Roto-Translation Equivariant Convolutional Networks: Application to Histopathology Image Analysis
Author / Creator:Lafarge, Maxime W ; Bekkers, Erik J ; Josien P W Pluim ; Duits, Remco ; Mitko Veta
Publisher:Ithaca: Cornell University Library, arXiv.org
Journal title:arXiv.org, 2020-02
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ArticlesFull Text
Domain-adversarial neural networks to address the appearance variability of histopathology images
Author / Creator:Lafarge, Maxime W ; Josien P W Pluim ; Eppenhof, Koen A J ; Moeskops, Pim ; Mitko Veta
Publisher:Ithaca: Cornell University Library, arXiv.org
Journal title:arXiv.org, 2017-07
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ArticlesFull Text
Inferring a Third Spatial Dimension from 2D Histological Images
Author / Creator:Lafarge, Maxime W ; Josien P W Pluim ; Eppenhof, Koen A J ; Moeskops, Pim ; Mitko Veta
Publisher:Ithaca: Cornell University Library, arXiv.org
Journal title:arXiv.org, 2018-01
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ArticlesFull Text
Adversarial training and dilated convolutions for brain MRI segmentation
Author / Creator:Moeskops, Pim ; Mitko Veta ; Lafarge, Maxime W ; Eppenhof, Koen A J ; Josien P W Pluim
Publisher:Ithaca: Cornell University Library, arXiv.org
Journal title:arXiv.org, 2017-07
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ArticlesFull Text
Roto-Translation Covariant Convolutional Networks for Medical Image Analysis
Author / Creator:Bekkers, Erik J ; Lafarge, Maxime W ; Mitko Veta ; Eppenhof, Koen AJ ; Josien PW Pluim ; Duits, Remco
Publisher:Ithaca: Cornell University Library, arXiv.org
Journal title:arXiv.org, 2018-06
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Image-based consensus molecular subtyping in rectal cancer biopsies and response to neoadjuvant chemoradiotherapy

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Pathway level subtyping identifies a slow-cycling biological phenotype associated with poor clinical outcomes in colorectal cancer

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Author Correction: Pathway level subtyping identifies a slow-cycling biological phenotype associated with poor clinical outcomes in colorectal cancer

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Fine-Grained Hard Negative Mining: Generalizing Mitosis Detection with a Fifth of the MIDOG 2022 Dataset

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Rotation Invariance and Extensive Data Augmentation: a strategy for the Mitosis Domain Generalization (MIDOG) Challenge

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Domain generalization across tumor types, laboratories, and species -- insights from the 2022 edition of the Mitosis Domain Generalization Challenge

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Multi-task learning for tissue segmentation and tumor detection in colorectal cancer histology slides

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Orientation-Disentangled Unsupervised Representation Learning for Computational Pathology

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Mitosis domain generalization in histopathology images -- The MIDOG challenge

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CohortFinder: an open-source tool for data-driven partitioning of biomedical image cohorts to yield robust machine learning models

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Roto-Translation Equivariant Convolutional Networks: Application to Histopathology Image Analysis

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Domain-adversarial neural networks to address the appearance variability of histopathology images

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Inferring a Third Spatial Dimension from 2D Histological Images

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Adversarial training and dilated convolutions for brain MRI segmentation

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Roto-Translation Covariant Convolutional Networks for Medical Image Analysis

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