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ArticlesPeer ReviewedFull Text
SLIM: a flexible web application for the reproducible processing of environmental DNA metabarcoding data
Author / Creator:Dufresne, Yoann ; Lejzerowicz, Franck ; Perret-Gentil, Laure Apotheloz ; Pawlowski, Jan ; Cordier, Tristan
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2019-02, Vol.20 (1), p.88-88, Article 88
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High-throughput sequencing and morphology perform equally well for benthic monitoring of marine ecosystems
Author / Creator:Lejzerowicz, Franck ; Esling, Philippe ; Pillet, Loïc ; Wilding, Thomas A. ; Black, Kenneth D. ; Pawlowski, Jan
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2015-09, Vol.5 (1), p.13932-13932, Article 13932
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Consumption of Fermented Foods Is Associated with Systematic Differences in the Gut Microbiome and Metabolome
Author / Creator:Taylor, Bryn C. ; Lejzerowicz, Franck ; Poirel, Marion ; Shaffer, Justin P. ; Jiang, Lingjing ; Aksenov, Alexander ; Litwin, Nicole ; Humphrey, Gregory ; Martino, Cameron ; Miller-Montgomery, Sandrine ; Dorrestein, Pieter C. ; Veiga, Patrick ; Song, Se Jin ; McDonald, Daniel ; Derrien, Muriel ; Knight, Rob
Publisher:United States: American Society for Microbiology
Journal title:mSystems, 2020-03, Vol.5 (2)
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ArticlesPeer ReviewedFull Text
Global branches and local states of the human gut microbiome define associations with environmental and intrinsic factors
Author / Creator:Tap, Julien ; Lejzerowicz, Franck ; Cotillard, Aurélie ; Pichaud, Matthieu ; McDonald, Daniel ; Song, Se Jin ; Knight, Rob ; Veiga, Patrick ; Derrien, Muriel
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2023-06, Vol.14 (1), p.3310-3310, Article 3310
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Planktonic foraminifera eDNA signature deposited on the seafloor remains preserved after burial in marine sediments
Author / Creator:Barrenechea Angeles, Inès ; Lejzerowicz, Franck ; Cordier, Tristan ; Scheplitz, Janin ; Kucera, Michal ; Ariztegui, Daniel ; Pawlowski, Jan ; Morard, Raphaël
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2020-11, Vol.10 (1), p.20351-12, Article 20351
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Next-Generation Sequencing of Aquatic Oligochaetes: Comparison of Experimental Communities
Author / Creator:Vivien, Régis ; Lejzerowicz, Franck ; Pawlowski, Jan
Publisher:United States: Public Library of Science
Journal title:PloS one, 2016-02, Vol.11 (2), p.e0148644-e0148644
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The influence of depth on the global deep-sea plasmidome
Author / Creator:Calderón-Osorno, Melany ; Rojas-Villalta, Dorian ; Lejzerowicz, Franck ; Cortés, Jorge ; Arias-Andres, Maria ; Rojas-Jimenez, Keilor
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2025-01, Vol.15 (1), p.2959-11, Article 2959
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Ultra-deep sequencing of foraminiferal microbarcodes unveils hidden richness of early monothalamous lineages in deep-sea sediments
Author / Creator:Lecroq, BÃ©atrice ; Lejzerowicz, Franck ; Bachar, Dipankar ; Christen, Richard ; Esling, Philippe ; Baerlocher, LoÃ¯c ; ÃsterÃ¥s, Magne ; Farinelli, Laurent ; Pawlowski, Jan
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2011-08, Vol.108 (32), p.13177-13182
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Eukaryotic Biodiversity and Spatial Patterns in the Clarion-Clipperton Zone and Other Abyssal Regions: Insights From Sediment DNA and RNA Metabarcoding
Author / Creator:Lejzerowicz, Franck ; Gooday, Andrew John ; Barrenechea Angeles, Inés ; Cordier, Tristan ; Morard, Raphaël ; Apothéloz-Perret-Gentil, Laure ; Lins, Lidia ; Menot, Lenaick ; Brandt, Angelika ; Levin, Lisa Ann ; Martinez Arbizu, Pedro ; Smith, Craig Randall ; Pawlowski, Jan
Publisher:Lausanne: Frontiers Research Foundation
Journal title:Frontiers in Marine Science, 2021-05, Vol.8
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Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy
Author / Creator:Zhu, Qiyun ; Huang, Shi ; Gonzalez, Antonio ; McGrath, Imran ; McDonald, Daniel ; Haiminen, Niina ; Armstrong, George ; Vázquez-Baeza, Yoshiki ; Yu, Julian ; Kuczynski, Justin ; Sepich-Poore, Gregory D. ; Swafford, Austin D. ; Das, Promi ; Shaffer, Justin P. ; Lejzerowicz, Franck ; Belda-Ferre, Pedro ; Havulinna, Aki S. ; Méric, Guillaume ; Niiranen, Teemu ; Lahti, Leo ; Salomaa, Veikko ; Kim, Ho-Cheol ; Jain, Mohit ; Inouye, Michael ; Gilbert, Jack A. ; Knight, Rob
Publisher:United States: American Society for Microbiology
Journal title:mSystems, 2022-04, Vol.7 (2), p.e0016722
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ArticlesPeer ReviewedFull Text
Correction for Zhu et al., “Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy”
Author / Creator:Zhu, Qiyun ; Huang, Shi ; Gonzalez, Antonio ; McGrath, Imran ; McDonald, Daniel ; Haiminen, Niina ; Armstrong, George ; Vázquez-Baeza, Yoshiki ; Yu, Julian ; Kuczynski, Justin ; Sepich-Poore, Gregory D. ; Swafford, Austin D. ; Das, Promi ; Shaffer, Justin P. ; Lejzerowicz, Franck ; Belda-Ferre, Pedro ; Havulinna, Aki S. ; Méric, Guillaume ; Niiranen, Teemu ; Lahti, Leo ; Salomaa, Veikko ; Kim, Ho-Cheol ; Jain, Mohit ; Inouye, Michael ; Gilbert, Jack A. ; Knight, Rob
Publisher:United States: American Society for Microbiology
Journal title:mSystems, 2024-11, Vol.9 (11), p.e0128924
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The Biodiversity and Distribution of Abyssal Benthic Foraminifera and Their Possible Ecological Roles: A Synthesis Across the Clarion-Clipperton Zone
Author / Creator:Gooday, Andrew J. ; Lejzerowicz, Franck ; Goineau, Aurélie ; Holzmann, Maria ; Kamenskaya, Olga ; Kitazato, Hiroshi ; Lim, Swee-Cheng ; Pawlowski, Jan ; Radziejewska, Teresa ; Stachowska, Zofia ; Wawrzyniak-Wydrowska, Brygida
Publisher:Lausanne: Frontiers Research Foundation
Journal title:Frontiers in Marine Science, 2021-06, Vol.8
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Planktonic foraminifera-derived environmental DNA extracted from abyssal sediments preserves patterns of plankton macroecology
Author / Creator:Morard, Raphaël ; Lejzerowicz, Franck ; Darling, Kate F. ; Lecroq-Bennet, Béatrice ; Winther Pedersen, Mikkel ; Orlando, Ludovic ; Pawlowski, Jan ; Mulitza, Stefan ; de Vargas, Colomban ; Kucera, Michal
Publisher:Katlenburg-Lindau: Copernicus GmbH
Journal title:Biogeosciences, 2017-06, Vol.14 (11), p.2741-2754
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Next-Generation Environmental Diversity Surveys of Foraminifera: Preparing the Future
Author / Creator:PAWLOWSKI, J. ; LEJZEROWICZ, F. ; ESLING, P.
Publisher:United States: Marine Biological Laboratory
Journal title:The Biological bulletin (Lancaster), 2014-10, Vol.227 (2), p.93-106
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Global Observing Needs in the Deep Ocean
Author / Creator:Levin, Lisa A. ; Bett, Brian J. ; Gates, Andrew R. ; Heimbach, Patrick ; Howe, Bruce M. ; Janssen, Felix ; McCurdy, Andrea ; Ruhl, Henry A. ; Snelgrove, Paul ; Stocks, Karen I. ; Bailey, David ; Baumann-Pickering, Simone ; Beaverson, Chris ; Benfield, Mark C. ; Booth, David J. ; Carreiro-Silva, Marina ; Colaço, Ana ; Eblé, Marie C. ; Fowler, Ashley M. ; Gjerde, Kristina M. ; Jones, Daniel O. B. ; Katsumata, K. ; Kelley, Deborah ; Le Bris, Nadine ; Leonardi, Alan P. ; Lejzerowicz, Franck ; Macreadie, Peter I. ; McLean, Dianne ; Meitz, Fred ; Morato, Telmo ; Netburn, Amanda ; Pawlowski, Jan ; Smith, Craig R. ; Sun, Song ; Uchida, Hiroshi ; Vardaro, Michael F. ; Venkatesan, R. ; Weller, Robert A.
Publisher:Lausanne: Frontiers Research Foundation
Journal title:Frontiers in Marine Science, 2019-05, Vol.6
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Redox determines greenhouse gas production kinetics and metabolic traits in water-saturated thawing permafrost peat
Author / Creator:Carlsen, Eira Catharine Lødrup ; Wei, Jing ; Lejzerowicz, Franck ; Trier Kjær, Sigrid ; Westermann, Sebastian ; Hessen, Dag O ; Dörsch, Peter ; Eiler, Alexander
Publisher:England: Oxford University Press
Journal title:ISME Communications, 2025-01, Vol.5 (1), p.ycaf009
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Palaeoceanographic changes in Hornsund Fjord (Spitsbergen, Svalbard) over the last millennium: new insights from ancient DNA
Author / Creator:Pawłowska, Joanna ; Zajączkowski, Marek ; Łącka, Magdalena ; Lejzerowicz, Franck ; Esling, Philippe ; Pawlowski, Jan
Publisher:Katlenburg-Lindau: Copernicus GmbH
Journal title:Climate of the past, 2016-07, Vol.12 (7), p.1459-1472
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Representing Diet in a Tree-Based Format for Interactive and Exploratory Assessment of Dietary Intake Data
Author / Creator:Litwin, Nicole ; Cantrell, Kalen ; Cotillard, Aurelie ; Derrien, Muriel ; Johnson, Abigail ; Knight, Rob ; Lejzerowicz, Franck ; McDonald, Daniel ; Nowinski, Brent ; Song, Se Jin ; Tap, Julien ; Veiga, Patrick
Publisher:Oxford: Elsevier Inc
Journal title:Current developments in nutrition, 2022-06, Vol.6 (Supplement_1), p.774-774
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Benthic monitoring of salmon farms in Norway using foraminiferal metabarcoding
Author / Creator:Pawlowski, Jan ; Esling, Philippe ; Lejzerowicz, Franck ; Cordier, Tristan ; Visco, Joana A. ; Martins, Catarina I. M. ; Kvalvik, Arne ; Staven, Knut ; Cedhagen, Tomas
Publisher:Inter-Research
Journal title:Aquaculture Environment Interactions, 2016-06, Vol.8, p.371-386
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ArticlesPeer ReviewedFull Text
Next-Generation Sequencing of Aquatic Oligochaetes: Comparison of Experimental Communities: e0148644
Author / Creator:Vivien, Regis ; Lejzerowicz, Franck ; Pawlowski, Jan
Journal title:PloS one, 2016-02, Vol.11 (2)
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Showing 1 to 20 of 23 results

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SLIM: a flexible web application for the reproducible processing of environmental DNA metabarcoding data

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High-throughput sequencing and morphology perform equally well for benthic monitoring of marine ecosystems

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Consumption of Fermented Foods Is Associated with Systematic Differences in the Gut Microbiome and Metabolome

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Global branches and local states of the human gut microbiome define associations with environmental and intrinsic factors

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Planktonic foraminifera eDNA signature deposited on the seafloor remains preserved after burial in marine sediments

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Next-Generation Sequencing of Aquatic Oligochaetes: Comparison of Experimental Communities

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The influence of depth on the global deep-sea plasmidome

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Ultra-deep sequencing of foraminiferal microbarcodes unveils hidden richness of early monothalamous lineages in deep-sea sediments

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Eukaryotic Biodiversity and Spatial Patterns in the Clarion-Clipperton Zone and Other Abyssal Regions: Insights From Sediment DNA and RNA Metabarcoding

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Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy

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Correction for Zhu et al., “Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy”

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The Biodiversity and Distribution of Abyssal Benthic Foraminifera and Their Possible Ecological Roles: A Synthesis Across the Clarion-Clipperton Zone

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Planktonic foraminifera-derived environmental DNA extracted from abyssal sediments preserves patterns of plankton macroecology

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Next-Generation Environmental Diversity Surveys of Foraminifera: Preparing the Future

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Global Observing Needs in the Deep Ocean

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Redox determines greenhouse gas production kinetics and metabolic traits in water-saturated thawing permafrost peat

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Palaeoceanographic changes in Hornsund Fjord (Spitsbergen, Svalbard) over the last millennium: new insights from ancient DNA

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Representing Diet in a Tree-Based Format for Interactive and Exploratory Assessment of Dietary Intake Data

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Benthic monitoring of salmon farms in Norway using foraminiferal metabarcoding

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Next-Generation Sequencing of Aquatic Oligochaetes: Comparison of Experimental Communities: e0148644

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