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ArticlesPeer ReviewedFull Text
DNA barcoding and metabarcoding of standardized samples reveal patterns of marine benthic diversity
Author / Creator:Leray, Matthieu ; Knowlton, Nancy
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2015-02, Vol.112 (7), p.2076-2081
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Censusing marine eukaryotic diversity in the twenty-first century
Author / Creator:Leray, Matthieu ; Knowlton, Nancy
Publisher:England: The Royal Society
Journal title:Philosophical transactions of the Royal Society of London. Series B. Biological sciences, 2016-09, Vol.371 (1702), p.20150331-20150331
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Random sampling causes the low reproducibility of rare eukaryotic OTUs in Illumina COI metabarcoding
Author / Creator:Leray, Matthieu ; Knowlton, Nancy
Publisher:United States: PeerJ. Ltd
Journal title:PeerJ (San Francisco, CA), 2017-03, Vol.5, p.e3006-e3006, Article e3006
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Rapid ecosystem-scale consequences of acute deoxygenation on a Caribbean coral reef
Author / Creator:Johnson, Maggie D. ; Scott, Jarrod J. ; Leray, Matthieu ; Lucey, Noelle ; Bravo, Lucia M. Rodriguez ; Wied, William L. ; Altieri, Andrew H.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2021-07, Vol.12 (1), p.4522-12, Article 4522
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Environmental DNA survey captures patterns of fish and invertebrate diversity across a tropical seascape
Author / Creator:Nguyen, Bryan N. ; Shen, Elaine W. ; Seemann, Janina ; Correa, Adrienne M. S. ; O’Donnell, James L. ; Altieri, Andrew H. ; Knowlton, Nancy ; Crandall, Keith A. ; Egan, Scott P. ; McMillan, W. Owen ; Leray, Matthieu
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2020-04, Vol.10 (1), p.6729, Article 6729
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ArticlesPeer ReviewedFull Text
MIDORI2: A collection of quality controlled, preformatted, and regularly updated reference databases for taxonomic assignment of eukaryotic mitochondrial sequences
Author / Creator:Leray, Matthieu ; Knowlton, Nancy ; Machida, Ryuji J.
Publisher:Hoboken: John Wiley & Sons, Inc
Journal title:Environmental DNA (Hoboken, N.J.), 2022-07, Vol.4 (4), p.894-907
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A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents
Author / Creator:Leray, Matthieu ; Yang, Joy Y ; Meyer, Christopher P ; Mills, Suzanne C ; Agudelo, Natalia ; Ranwez, Vincent ; Boehm, Joel T ; Machida, Ryuji J
Publisher:England: BioMed Central Ltd
Journal title:Frontiers in zoology, 2013-06, Vol.10 (1), p.34-34
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The importance of standardization for biodiversity comparisons: A case study using autonomous reef monitoring structures (ARMS) and metabarcoding to measure cryptic diversity on Mo’orea coral reefs, F...
Author / Creator:Ransome, Emma ; Geller, Jonathan B. ; Timmers, Molly ; Leray, Matthieu ; Mahardini, Angka ; Sembiring, Andrianus ; Collins, Allen G. ; Meyer, Christopher P.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2017-04, Vol.12 (4), p.e0175066
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Metabarcoding dietary analysis of coral dwelling predatory fish demonstrates the minor contribution of coral mutualists to their highly partitioned, generalist diet
Author / Creator:Leray, Matthieu ; Meyer, Christopher P. ; Mills, Suzanne C.
Publisher:United States: PeerJ. Ltd
Journal title:PeerJ (San Francisco, CA), 2015-06, Vol.3, p.e1047-e1047
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ArticlesPeer ReviewedFull Text
Effectiveness of Annealing Blocking Primers versus Restriction Enzymes for Characterization of Generalist Diets: Unexpected Prey Revealed in the Gut Contents of Two Coral Reef Fish Species
Author / Creator:Leray, Matthieu ; Agudelo, Natalia ; Mills, Suzanne C. ; Meyer, Christopher P.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2013-04, Vol.8 (4), p.e58076-e58076
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ArticlesPeer ReviewedFull Text
Natural experiments and long-term monitoring are critical to understand and predict marine host–microbe ecology and evolution
Author / Creator:Leray, Matthieu ; Wilkins, Laetitia G. E. ; Apprill, Amy ; Bik, Holly M. ; Clever, Friederike ; Connolly, Sean R. ; De León, Marina E. ; Duffy, J. Emmett ; Ezzat, Leïla ; Gignoux-Wolfsohn, Sarah ; Herre, Edward Allen ; Kaye, Jonathan Z. ; Kline, David I. ; Kueneman, Jordan G. ; McCormick, Melissa K. ; McMillan, W. Owen ; O’Dea, Aaron ; Pereira, Tiago J. ; Petersen, Jillian M. ; Petticord, Daniel F. ; Torchin, Mark E. ; Vega Thurber, Rebecca ; Videvall, Elin ; Wcislo, William T. ; Yuen, Benedict ; Eisen, Jonathan A.
Publisher:San Francisco: Public Library of Science
Journal title:PLoS biology, 2021-08, Vol.19 (8), p.e3001322
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ArticlesPeer ReviewedFull Text
Recent and old duplications in crustaceans “Internal Transcribed Spacer 1″: structural and phylogenetic implications
Author / Creator:Van Wormhoudt, Alain ; Adjeroud, Mehdi ; Rouzé, Heloise ; Leray, Matthieu
Publisher:Dordrecht: Springer Netherlands
Journal title:Molecular biology reports, 2019-10, Vol.46 (5), p.5185-5195
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ArticlesPeer ReviewedFull Text
Metabarcoding the marine environment: from single species to biogeographic patterns
Author / Creator:Gaither, Michelle R. ; DiBattista, Joseph D. ; Leray, Matthieu ; Heyden, Sophie
Publisher:Hoboken: John Wiley & Sons, Inc
Journal title:Environmental DNA (Hoboken, N.J.), 2022-01, Vol.4 (1), p.3-8
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ArticlesPeer ReviewedFull Text
DNA metabarcoding provides insights into the diverse diet of a dominant suspension feeder, the giant plumose anemone Metridium farcimen
Author / Creator:Wells, Christopher D. ; Paulay, Gustav ; Nguyen, Bryan N. ; Leray, Matthieu
Publisher:Hoboken: John Wiley & Sons, Inc
Journal title:Environmental DNA (Hoboken, N.J.), 2022-01, Vol.4 (1), p.147-156
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ArticlesPeer ReviewedFull Text
Acanthaster planci Outbreak: Decline in Coral Health, Coral Size Structure Modification and Consequences for Obligate Decapod Assemblages
Author / Creator:Leray, Matthieu ; Béraud, Maxime ; Anker, Arthur ; Chancerelle, Yannick ; Mills, Suzanne C.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2012-04, Vol.7 (4), p.e35456
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ArticlesPeer ReviewedFull Text
The gut microbiome variability of a butterflyfish increases on severely degraded Caribbean reefs
Author / Creator:Clever, Friederike ; Sourisse, Jade M. ; Preziosi, Richard F. ; Eisen, Jonathan A. ; Guerra, E. Catalina Rodriguez ; Scott, Jarrod J. ; Wilkins, Laetitia G. E. ; Altieri, Andrew H. ; McMillan, W. Owen ; Leray, Matthieu
Publisher:London: Nature Publishing Group UK
Journal title:Communications biology, 2022-07, Vol.5 (1), p.770-770, Article 770
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ArticlesPeer ReviewedFull Text
Housekeeping Mutualisms: Do More Symbionts Facilitate Host Performance?
Author / Creator:Stier, Adrian C. ; Gil, Michael A. ; McKeon, C. Seabird ; Lemer, Sarah ; Leray, Matthieu ; Mills, Suzanne C. ; Osenberg, Craig W.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2012-04, Vol.7 (4), p.e32079-e32079
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The First International eDNA Workshop in Hong Kong: A beginner's guide for the next‐generation eDNA researcher
Author / Creator:Seymour, Mathew ; Guibert, Isis ; Jeunen, Gert‐Jan ; Hellström, Micaela ; Leray, Matthieu ; Elbrect, Vasco ; Lau, Anthony ; Cutracci, Maxine ; How, Chun Ming ; Ip, Jack Chi Ho ; Liu, Zifang ; Moffitt, Jessica ; Qian, Cheng ; Qin, Xian ; Tse, Cham Man ; Wang, Yifu ; Wang, Zhi ; Zeng, Xiaoyi ; Zhao, Meihong
Publisher:Hoboken: John Wiley & Sons, Inc
Journal title:Environmental DNA (Hoboken, N.J.), 2024-05, Vol.6 (3), p.n/a
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Hyperdiverse Macrofauna Communities Associated with a Common Sponge, Stylissa carteri, Shift across Ecological Gradients in the Central Red Sea
Author / Creator:Kandler, Nora M. ; Wooster, Michael K. ; Leray, Matthieu ; Knowlton, Nancy ; de Voogd, Nicole J. ; Paulay, Gustav ; Berumen, Michael L.
Publisher:Basel: MDPI AG
Journal title:Diversity (Basel), 2019-02, Vol.11 (2), p.18
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ArticlesPeer ReviewedFull Text
Metazoan mitochondrial gene sequence reference datasets for taxonomic assignment of environmental samples
Author / Creator:Machida, Ryuji J. ; Leray, Matthieu ; Ho, Shian-Lei ; Knowlton, Nancy
Publisher:London: Nature Publishing Group UK
Journal title:Scientific data, 2017-03, Vol.4 (1), p.170027-170027, Article 170027
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Showing 1 to 20 of 41 results

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DNA barcoding and metabarcoding of standardized samples reveal patterns of marine benthic diversity

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Censusing marine eukaryotic diversity in the twenty-first century

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Random sampling causes the low reproducibility of rare eukaryotic OTUs in Illumina COI metabarcoding

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Rapid ecosystem-scale consequences of acute deoxygenation on a Caribbean coral reef

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Environmental DNA survey captures patterns of fish and invertebrate diversity across a tropical seascape

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MIDORI2: A collection of quality controlled, preformatted, and regularly updated reference databases for taxonomic assignment of eukaryotic mitochondrial sequences

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A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents

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The importance of standardization for biodiversity comparisons: A case study using autonomous reef monitoring structures (ARMS) and metabarcoding to measure cryptic diversity on Mo’orea coral reefs, F...

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Metabarcoding dietary analysis of coral dwelling predatory fish demonstrates the minor contribution of coral mutualists to their highly partitioned, generalist diet

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Effectiveness of Annealing Blocking Primers versus Restriction Enzymes for Characterization of Generalist Diets: Unexpected Prey Revealed in the Gut Contents of Two Coral Reef Fish Species

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Natural experiments and long-term monitoring are critical to understand and predict marine host–microbe ecology and evolution

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Recent and old duplications in crustaceans “Internal Transcribed Spacer 1″: structural and phylogenetic implications

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Metabarcoding the marine environment: from single species to biogeographic patterns

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DNA metabarcoding provides insights into the diverse diet of a dominant suspension feeder, the giant plumose anemone Metridium farcimen

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Acanthaster planci Outbreak: Decline in Coral Health, Coral Size Structure Modification and Consequences for Obligate Decapod Assemblages

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The gut microbiome variability of a butterflyfish increases on severely degraded Caribbean reefs

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Housekeeping Mutualisms: Do More Symbionts Facilitate Host Performance?

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The First International eDNA Workshop in Hong Kong: A beginner's guide for the next‐generation eDNA researcher

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Hyperdiverse Macrofauna Communities Associated with a Common Sponge, Stylissa carteri, Shift across Ecological Gradients in the Central Red Sea

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Metazoan mitochondrial gene sequence reference datasets for taxonomic assignment of environmental samples

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