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ArticlesPeer ReviewedFull Text
Genomic dissection of conserved transcriptional regulation in intestinal epithelial cells
Author / Creator:Lickwar, Colin R. ; Camp, J. Gray ; Weiser, Matthew ; Cocchiaro, Jordan L. ; Kingsley, David M. ; Furey, Terrence S. ; Sheikh, Shehzad Z. ; Rawls, John F.
Publisher:United States: Public Library of Science
Journal title:PLoS biology, 2017-08, Vol.15 (8), p.e2002054-e2002054
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ArticlesPeer ReviewedFull Text
Starvation causes changes in the intestinal transcriptome and microbiome that are reversed upon refeeding
Author / Creator:Jawahar, Jayanth ; McCumber, Alexander W. ; Lickwar, Colin R. ; Amoroso, Caroline R. ; de la Torre Canny, Sol Gomez ; Wong, Sandi ; Morash, Margaret ; Thierer, James H. ; Farber, Steven A. ; Bohannan, Brendan J. M. ; Guillemin, Karen ; Rawls, John F.
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2022-03, Vol.23 (1), p.225-19, Article 225
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ArticlesPeer ReviewedFull Text
The Set2/Rpd3S Pathway Suppresses Cryptic Transcription without Regard to Gene Length or Transcription Frequency
Author / Creator:Lickwar, Colin R. ; Rao, Bhargavi ; Shabalin, Andrey A. ; Nobel, Andrew B. ; Strahl, Brian D. ; Lieb, Jason D.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2009-03, Vol.4 (3), p.e4886-e4886
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ArticlesPeer ReviewedFull Text
Transcriptional programmes underlying cellular identity and microbial responsiveness in the intestinal epithelium
Author / Creator:Heppert, Jennifer K. ; Davison, James M. ; Kelly, Cecelia ; Mercado, Gilberto Padilla ; Lickwar, Colin R. ; Rawls, John F.
Publisher:London: Nature Publishing Group UK
Journal title:Nature reviews. Gastroenterology & hepatology, 2021-01, Vol.18 (1), p.7-23
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ArticlesPeer ReviewedFull Text
Genome-wide protein–DNA binding dynamics suggest a molecular clutch for transcription factor function
Author / Creator:Lickwar, Colin R. ; Mueller, Florian ; Hanlon, Sean E. ; McNally, James G. ; Lieb, Jason D.
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2012-04, Vol.484 (7393), p.251-255
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ArticlesPeer ReviewedFull Text
Genome-wide measurement of protein-DNA binding dynamics using competition ChIP
Author / Creator:Lickwar, Colin R ; Mueller, Florian ; Lieb, Jason D
Publisher:London: Nature Publishing Group UK
Journal title:Nature protocols, 2013-07, Vol.8 (7), p.1337-1353
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ArticlesPeer ReviewedFull Text
A Guanosine-Centric Mechanism for RNA Chaperone Function
Author / Creator:Grohman, Jacob K. ; Gorelick, Robert J. ; Lickwar, Colin R. ; Lieb, Jason D. ; Bower, Brian D. ; Znosko, Brent M. ; Weeks, Kevin M.
Publisher:United States: American Association for the Advancement of Science
Journal title:Science (American Association for the Advancement of Science), 2013-04, Vol.340 (6129), p.190-195
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ArticlesFull Text
Intestinal enteroendocrine cell subtype differentiation and hormone production in zebrafish
Author / Creator:Morash, Margaret ; Kay, Richard G ; Soderblom, Erik J ; Maclean, Grace H ; Jia Wen ; Moore, Peyton J ; Lickwar, Colin R ; Gribble, Fiona M ; Reimann, Frank ; Liddle, Rodger A ; Rawls, John F
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2025-01
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ArticlesFull Text
Fxr signaling and microbial metabolism of bile salts in the zebrafish intestine
Author / Creator:Jia Wen ; Gilberto Padilla Mercado ; Volland, Alyssa ; Doden, Heidi L ; Lickwar, Colin R ; Crooks, Taylor ; Genta Kakiyama ; Kelly, Cecelia ; Cocchiaro, Jordan L ; Ridlon, Jason M ; Rawls, John F
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2020-12
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ArticlesFull Text
Enteroendocrine cells sense bacterial tryptophan catabolites to activate enteric and vagal neuronal pathways
Author / Creator:Ye, Lihua ; Bae, Munhyung ; Cassilly, Chelsi D ; Jabba, Sairam V ; Thorpe, Daniel W ; Martin, Alyce M ; Hsiu-Yi Lu ; Wang, Jinhu ; Thompson, John D ; Lickwar, Colin R ; Poss, Kenneth D ; Keating, Damien J ; Sven-Eric Jordt ; Clardy, Jon ; Liddle, Rodger A ; Rawls, John F
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2020-09
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ArticlesFull Text
Hnf4a mediates microbial control of intestinal gene expression and inflammation
Author / Creator:Davison, James M ; Lickwar, Colin R ; Song, Lingyun ; Breton, Ghislain ; Crawford, Gregory E ; Rawls, John F
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2016-12
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ArticlesPeer ReviewedFull Text
Genome-wide protein-DNA binding dynamics suggest a molecular clutch for transcription factor function
Author / Creator:Lickwar, Colin R ; Mueller, Florian ; Hanlon, Sean E ; McNally, James G ; Lieb, Jason D
Publisher:Nature Publishing Group
Journal title:Nature (London), 2012-04, Vol.484 (7393), p.251
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ArticlesPeer ReviewedFull Text
Genomewide protein-DNA binding dynamics suggest a clutch for transcription factor function
Author / Creator:Lickwar, Colin R. ; Mueller, Florian ; Hanlon, Sean E. ; McNally, James G ; Lieb, Jason D.
Journal title:Nature (London), 2012-04, Vol.484 (7393), p.251-255
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Genomic dissection of conserved transcriptional regulation in intestinal epithelial cells

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Starvation causes changes in the intestinal transcriptome and microbiome that are reversed upon refeeding

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The Set2/Rpd3S Pathway Suppresses Cryptic Transcription without Regard to Gene Length or Transcription Frequency

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Transcriptional programmes underlying cellular identity and microbial responsiveness in the intestinal epithelium

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Genome-wide protein–DNA binding dynamics suggest a molecular clutch for transcription factor function

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Genome-wide measurement of protein-DNA binding dynamics using competition ChIP

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A Guanosine-Centric Mechanism for RNA Chaperone Function

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Intestinal enteroendocrine cell subtype differentiation and hormone production in zebrafish

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Fxr signaling and microbial metabolism of bile salts in the zebrafish intestine

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Enteroendocrine cells sense bacterial tryptophan catabolites to activate enteric and vagal neuronal pathways

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Hnf4a mediates microbial control of intestinal gene expression and inflammation

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Genome-wide protein-DNA binding dynamics suggest a molecular clutch for transcription factor function

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Genomewide protein-DNA binding dynamics suggest a clutch for transcription factor function

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