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16 results for Lijnzaad,+Philip

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ArticlesPeer ReviewedFull Text
An organoid biobank for childhood kidney cancers that captures disease and tissue heterogeneity
Author / Creator:Calandrini, Camilla ; Schutgens, Frans ; Oka, Rurika ; Margaritis, Thanasis ; Candelli, Tito ; Mathijsen, Luka ; Ammerlaan, Carola ; van Ineveld, Ravian L. ; Derakhshan, Sepide ; de Haan, Sanne ; Dolman, Emmy ; Lijnzaad, Philip ; Custers, Lars ; Begthel, Harry ; Kerstens, Hindrik H. D. ; Visser, Lindy L. ; Rookmaaker, Maarten ; Verhaar, Marianne ; Tytgat, Godelieve A. M. ; Kemmeren, Patrick ; de Krijger, Ronald R. ; Al-Saadi, Reem ; Pritchard-Jones, Kathy ; Kool, Marcel ; Rios, Anne C. ; van den Heuvel-Eibrink, Marry M. ; Molenaar, Jan J. ; van Boxtel, Ruben ; Holstege, Frank C. P. ; Clevers, Hans ; Drost, Jarno
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2020-03, Vol.11 (1), p.1310-1310, Article 1310
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Genome‐wide off‐rates reveal how DNA binding dynamics shape transcription factor function
Author / Creator:de Jonge, Wim J ; Brok, Mariël ; Lijnzaad, Philip ; Kemmeren, Patrick ; Holstege, Frank CP
Publisher:London: Nature Publishing Group UK
Journal title:Molecular systems biology, 2020-10, Vol.16 (10), p.e9885-n/a
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Cell cycle population effects in perturbation studies
Author / Creator:O'Duibhir, Eoghan ; Lijnzaad, Philip ; Benschop, Joris J ; Lenstra, Tineke L ; van Leenen, Dik ; Groot Koerkamp, Marian JA ; Margaritis, Thanasis ; Brok, Mariel O ; Kemmeren, Patrick ; Holstege, Frank CP
Publisher:London: Nature Publishing Group UK
Journal title:Molecular systems biology, 2014-06, Vol.10 (6), p.732-n/a
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The ability of transcription factors to differentially regulate gene expression is a crucial component of the mechanism underlying inversion, a frequently observed genetic interaction pattern
Author / Creator:Amini, Saman ; Jacobsen, Annika ; Ivanova, Olga ; Lijnzaad, Philip ; Heringa, Jaap ; Holstege, Frank C. P. ; Feenstra, K. Anton ; Kemmeren, Patrick
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2019-05, Vol.15 (5), p.e1007061-e1007061
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Centromere Binding and a Conserved Role in Chromosome Stability for SUMO-Dependent Ubiquitin Ligases
Author / Creator:van de Pasch, Loes A. L. ; Miles, Antony J. ; Nijenhuis, Wilco ; Brabers, Nathalie A. C. H. ; van Leenen, Dik ; Lijnzaad, Philip ; Brown, Markus K. ; Ouellet, Jimmy ; Barral, Yves ; Kops, Geert J. P. L. ; Holstege, Frank C. P.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2013-06, Vol.8 (6), p.e65628
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Developing a strategy for computational lab skills training through Software and Data Carpentry: Experiences from the ELIXIR Pilot action
Author / Creator:Pawlik, Aleksandra ; van Gelder, Celia W.G. ; Nenadic, Aleksandra ; Palagi, Patricia M. ; Korpelainen, Eija ; Lijnzaad, Philip ; Marek, Diana ; Sansone, Susanna-Assunta ; Hancock, John ; Goble, Carole
Publisher:England: Faculty of 1000 Ltd
Journal title:F1000 research, 2017, Vol.6, p.1040
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Adaptable gene‐specific dye bias correction for two‐channel DNA microarrays
Author / Creator:Margaritis, Thanasis ; Lijnzaad, Philip ; van Leenen, Dik ; Bouwmeester, Diane ; Kemmeren, Patrick ; van Hooff, Sander R ; Holstege, Frank CP
Publisher:London: Nature Publishing Group UK
Journal title:Molecular systems biology, 2009-04, Vol.5 (1), p.266-n/a
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Accessing and distributing EMBL data using CORBA (common object request broker architecture)
Author / Creator:Wang, Lichun ; Rodriguez-Tomé, Patricia ; Redaschi, Nicole ; McNeil, Phil ; Robinson, Alan ; Lijnzaad, Philip
Publisher:BioMed Central Ltd
Journal title:Genome Biology (Online Edition), 2000-11, Vol.1 (5), p.64-64, Article research0010.1
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Divergent WNT signaling and drug sensitivity profiles within hepatoblastoma tumors and organoids
Author / Creator:Kluiver, Thomas A. ; Lu, Yuyan ; Schubert, Stephanie A. ; Kraaier, Lianne J. ; Ringnalda, Femke ; Lijnzaad, Philip ; DeMartino, Jeff ; Megchelenbrink, Wouter L. ; Amo-Addae, Vicky ; Eising, Selma ; de Faria, Flavia W. ; Münter, Daniel ; van de Wetering, Marc ; Kerl, Kornelius ; Duiker, Evelien ; van den Heuvel, Marius C. ; de Meijer, Vincent E. ; de Kleine, Ruben H. ; Molenaar, Jan J. ; Margaritis, Thanasis ; Stunnenberg, Hendrik G. ; de Krijger, Ronald R. ; Zsiros, József ; Clevers, Hans ; Peng, Weng Chuan
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2024-11, Vol.15 (1), p.8576-17, Article 8576
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An expression profile for diagnosis of lymph node metastases from primary head and neck squamous cell carcinomas
Author / Creator:Roepman, Paul ; Wessels, Lodewyk F A ; Kettelarij, Nienke ; Kemmeren, Patrick ; Miles, Antony J ; Lijnzaad, Philip ; Tilanus, Marcel G J ; Koole, Ronald ; Hordijk, Gert-Jan ; van der Vliet, Peter C ; Reinders, Marcel J T ; Slootweg, Piet J ; Holstege, Frank C P
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2005-02, Vol.37 (2), p.182-186
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A high-resolution gene expression atlas of epistasis between gene-specific transcription factors exposes potential mechanisms for genetic interactions
Author / Creator:Sameith, Katrin ; Amini, Saman ; Groot Koerkamp, Marian J. A. ; van Leenen, Dik ; Brok, Mariel ; Brabers, Nathalie ; Lijnzaad, Philip ; van Hooff, Sander R. ; Benschop, Joris J. ; Lenstra, Tineke L. ; Apweiler, Eva ; van Wageningen, Sake ; Snel, Berend ; Holstege, Frank C. P. ; Kemmeren, Patrick
Publisher:England: BioMed Central Ltd
Journal title:BMC biology, 2015-12, Vol.13 (1), p.112-112, Article 112
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Centromere Binding and a Conserved Role in Chromosome Stability for SUMO-Dependent Ubiquitin Ligases. e65628
Author / Creator:Pasch, L vande ; Miles, Antony J ; Nijenhuis, Wilco ; Brabers, A CH ; Leenen, Dik van ; Lijnzaad, Philip ; Brown, Markus K ; Ouellet, Jimmy ; Barral, Yves ; Kops, J PL
Journal title:PloS one, 2013-06, Vol.8 (6)
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Cdk8 directly regulates glycolysis via phosphorylation of Gcr2
Author / Creator:Aristizabal, Maria J ; Eoghan O’duibhir ; De Jonge, Wim ; Dever, Kristy ; Hawe, Nicole ; Marian Groot Koerkamp ; Brok, Mariel ; Dik Van Leenen ; Lijnzaad, Philip ; Kobor, Michael S ; Frank Cp Holstege ; Sadowski, Ivan
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2021-03
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The ability of transcription factors to differentially regulate gene expression is a crucial component of the mechanism underlying inversion, a frequently observed genetic interaction pattern
Author / Creator:Amini, Saman ; Jacobsen, Annika ; Ivanova, Olga ; Lijnzaad, Philip ; Heringa, Jaap ; Frank Cp Holstege ; K Anton Feenstra ; Kemmeren, Patrick
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2018-10
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Sharq, a versatile preprocessing and QC pipeline for Single Cell RNA-seq
Author / Creator:Candelli, Tito ; Lijnzaad, Philip ; Muraro, Mauro J ; Kerstens, Hindrik ; Kemmeren, Patrick ; Alexander Van Oudenaarden ; Margaritis, Thanasis ; Holstege, Frank
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2018-02
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Tumor to normal single cell mRNA comparisons reveal a pan-neuroblastoma cancer cell
Author / Creator:Kildisiute, Gerda ; Kholosy, Waleed M ; Young, Matthew D ; Roberts, Kenny ; Elmentaite, Rasa ; Van Hooff, Sander R ; Khabirova, Eleonora ; Piapi, Alice ; Thevanesan, Christine ; Blanco, Eva Bugallo ; Burke, Christina ; Lira Mamanova ; Lijnzaad, Philip ; Margaritis, Thanasis ; Frank Cp Holstege ; Tas, Michelle L ; Wijnen, Marc Hwa ; Van Noesel, Max M ; Ignacio Del Valle ; Barone, Giuseppe ; Van Der Linden, Reinier ; Duncan, Catriona ; Anderson, John ; Achermann, John C ; Haniffa, Muzlifah ; Teichmann, Sarah A ; Rampling, Dyanne ; Sebire, Neil J ; He, Xiaoling ; De Krijger, Ronald R ; Barker, Roger A ; Meyer, Kerstin B ; Bayraktar, Omer ; Straathof, Karin ; Molenaar, Jan J ; Behjati, Sam
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2020-12
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An organoid biobank for childhood kidney cancers that captures disease and tissue heterogeneity

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Genome‐wide off‐rates reveal how DNA binding dynamics shape transcription factor function

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Cell cycle population effects in perturbation studies

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The ability of transcription factors to differentially regulate gene expression is a crucial component of the mechanism underlying inversion, a frequently observed genetic interaction pattern

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Centromere Binding and a Conserved Role in Chromosome Stability for SUMO-Dependent Ubiquitin Ligases

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Developing a strategy for computational lab skills training through Software and Data Carpentry: Experiences from the ELIXIR Pilot action

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Adaptable gene‐specific dye bias correction for two‐channel DNA microarrays

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Accessing and distributing EMBL data using CORBA (common object request broker architecture)

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Divergent WNT signaling and drug sensitivity profiles within hepatoblastoma tumors and organoids

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An expression profile for diagnosis of lymph node metastases from primary head and neck squamous cell carcinomas

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A high-resolution gene expression atlas of epistasis between gene-specific transcription factors exposes potential mechanisms for genetic interactions

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Centromere Binding and a Conserved Role in Chromosome Stability for SUMO-Dependent Ubiquitin Ligases. e65628

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Cdk8 directly regulates glycolysis via phosphorylation of Gcr2

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The ability of transcription factors to differentially regulate gene expression is a crucial component of the mechanism underlying inversion, a frequently observed genetic interaction pattern

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Sharq, a versatile preprocessing and QC pipeline for Single Cell RNA-seq

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Tumor to normal single cell mRNA comparisons reveal a pan-neuroblastoma cancer cell

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