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ArticlesPeer ReviewedFull Text
PathFams: statistical detection of pathogen-associated protein domains
Author / Creator:Lobb, Briallen ; Tremblay, Benjamin Jean-Marie ; Moreno-Hagelsieb, Gabriel ; Doxey, Andrew C.
Publisher:London: BioMed Central Ltd
Journal title:BMC genomics, 2021-09, Vol.22 (1), p.1-663, Article 663
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ArticlesPeer ReviewedFull Text
Functional Profiling and Evolutionary Analysis of a Marine Microalgal Virus Pangenome
Author / Creator:Lobb, Briallen ; Shapter, Anson ; Doxey, Andrew C. ; Nissimov, Jozef I.
Publisher:Switzerland: MDPI AG
Journal title:Viruses, 2023-05, Vol.15 (5), p.1116
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ArticlesPeer ReviewedFull Text
The impact of cigarette smoke exposure, COPD, or asthma status on ABC transporter gene expression in human airway epithelial cells
Author / Creator:Aguiar, Jennifer A. ; Tamminga, Andrea ; Lobb, Briallen ; Huff, Ryan D. ; Nguyen, Jenny P. ; Kim, Yechan ; Dvorkin-Gheva, Anna ; Stampfli, Martin R. ; Doxey, Andrew C. ; Hirota, Jeremy A.
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2019-01, Vol.9 (1), p.153-153, Article 153
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ArticlesPeer ReviewedFull Text
Ancient Clostridium DNA and variants of tetanus neurotoxins associated with human archaeological remains
Author / Creator:Hodgins, Harold P. ; Chen, Pengsheng ; Lobb, Briallen ; Wei, Xin ; Tremblay, Benjamin J. M. ; Mansfield, Michael J. ; Lee, Victoria C. Y. ; Lee, Pyung-Gang ; Coffin, Jeffrey ; Duggan, Ana T. ; Dolphin, Alexis E. ; Renaud, Gabriel ; Dong, Min ; Doxey, Andrew C.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2023-09, Vol.14 (1), p.5475-15, Article 5475
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ArticlesPeer ReviewedFull Text
Genomic classification and antimicrobial resistance profiling of Streptococcus pneumoniae and Haemophilus influenzae isolates associated with paediatric otitis media and upper respiratory infection
Author / Creator:Lobb, Briallen ; Lee, Matthew C. ; McElheny, Christi L. ; Doi, Yohei ; Yahner, Kristin ; Hoberman, Alejandro ; Martin, Judith M. ; Hirota, Jeremy A. ; Doxey, Andrew C. ; Shaikh, Nader
Publisher:BMC
Journal title:BMC infectious diseases, 2023-09, Vol.23 (1), p.1-14, Article 596
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ArticlesPeer ReviewedFull Text
Metatranscriptomic profiling reveals pathogen and host response signatures of pediatric acute sinusitis and upper respiratory infection
Author / Creator:Doxey, Andrew C. ; Abu Mazen, Nooran ; Homm, Max ; Chu, Vivian ; Hunjan, Manjot ; Lobb, Briallen ; Lee, Sojin ; Kurs-Lasky, Marcia ; Williams, John V. ; MacDonald, William ; Johnson, Monika ; Hirota, Jeremy A. ; Shaikh, Nader
Publisher:England: BioMed Central Ltd
Journal title:Genome medicine, 2025-03, Vol.17 (1), p.22-22, Article 22
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ArticlesPeer ReviewedFull Text
MetAnnotate: function-specific taxonomic profiling and comparison of metagenomes
Author / Creator:Petrenko, Pavel ; Lobb, Briallen ; Kurtz, Daniel A. ; Neufeld, Josh D. ; Doxey, Andrew C.
Publisher:England: BioMed Central Ltd
Journal title:BMC biology, 2015-11, Vol.13 (1), p.92-92, Article 92
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ArticlesPeer ReviewedFull Text
Exploring the Evolution of Virulence Factors through Bioinformatic Data Mining
Author / Creator:Doxey, Andrew C. ; Mansfield, Michael J. ; Lobb, Briallen
Publisher:United States: American Society for Microbiology
Journal title:mSystems, 2019-05, Vol.4 (3)
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ArticlesPeer ReviewedFull Text
Time Series Resolution of the Fish Necrobiome Reveals a Decomposer Succession Involving Toxigenic Bacterial Pathogens
Author / Creator:Lobb, Briallen ; Hodgson, Rhiannon ; Lynch, Michael D. J. ; Mansfield, Michael J. ; Cheng, Jiujun ; Charles, Trevor C. ; Neufeld, Josh D. ; Craig, Paul M. ; Doxey, Andrew C.
Publisher:United States: American Society for Microbiology
Journal title:mSystems, 2020-04, Vol.5 (2)
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ArticlesPeer ReviewedFull Text
Draft Genome Sequences of Two Novel Cellulolytic Streptomyces Strains Isolated from South African Rhizosphere Soil
Author / Creator:Adegboye, Mobolaji F ; Lobb Briallen ; Babalola, Olubukola O ; Doxey, Andrew C ; Ma Kesen
Publisher:Washington: American Society for Microbiology
Journal title:Microbiology resource announcements, 2018-06, Vol.6 (26)
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ArticlesPeer ReviewedFull Text
AnnoView enables large-scale analysis, comparison, and visualization of microbial gene neighborhoods
Author / Creator:Wei, Xin ; Tan, Huagang ; Lobb, Briallen ; Zhen, William ; Wu, Zijing ; Parks, Donovan H ; Neufeld, Josh D ; Moreno-Hagelsieb, Gabriel ; Doxey, Andrew C
Publisher:England: Oxford Publishing Limited (England)
Journal title:Briefings in bioinformatics, 2024-03, Vol.25 (3)
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ArticlesPeer ReviewedFull Text
Genomic classification and antimicrobial resistance profiling of Streptococcus pneumoniae and Haemophilus influenza isolates associated with paediatric otitis media and upper respiratory infection
Author / Creator:Lobb, Briallen ; Lee, Matthew C ; McElheny, Christi L ; Doi, Yohei ; Yahner, Kristin ; Hoberman, Alejandro ; Martin, Judith M ; Hirota, Jeremy A ; Doxey, Andrew C ; Shaikh, Nader
Publisher:London: BioMed Central Ltd
Journal title:BMC infectious diseases, 2023-09, Vol.23 (1), p.1
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ArticlesFull Text
Identification of divergent botulinum neurotoxin homologs in Paeniclostridium ghonii
Author / Creator:Wei, Xin ; Wentz, Travis ; Lobb, Briallen ; Mansfield, Michael J ; Zhen, William ; Tan, Huagang ; Wu, Zijing ; Pellett, Sabine ; Dong, Min ; Doxey, Andrew C
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2022-08
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ArticlesFull Text
AnnoView enables large-scale analysis, comparison, and visualization of microbial gene neighborhoods
Author / Creator:Wei, Xin ; Tan, Huagang ; Lobb, Briallen ; Zhen, William ; Wu, Zijing ; Parks, Donovan H ; Neufeld, Josh D ; Moreno-Hagelsieb, Gabriel ; Doxey, Andrew C
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2024-01
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ArticlesFull Text
Gene expression and in situ protein profiling of candidate SARS-CoV-2 receptors in human airway epithelial cells and lung tissue
Author / Creator:Aguiar, Jennifer A ; Tremblay, Benjamin Jean-Marie ; Mansfield, Michael J ; Owen, Woody ; Lobb, Briallen ; Banerjee, Arinjay ; Chandiramohan, Abiram ; Tiessen, Nicholas ; Dvorkin-Gheva, Anna ; Revill, Spencer ; Miller, Matthew S ; Carlsten, Christopher ; Organ, Louise ; Chitra, Joseph ; John, Alison ; Hanson, Paul J ; Mcmanus, Bruce M ; Jenkins, Gisli ; Mossman, Karen ; Ask, Kjetil ; Doxey, Andrew C ; Hirota, Jeremy A
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2020-04
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ArticlesFull Text
The impact of cigarette smoke exposure, and COPD or asthma status on ABC transporter gene expression in human airway epithelial cells
Author / Creator:Aguiar, Jennifer A ; Tamminga, Andrea ; Lobb, Briallen ; Huff, Ryan D ; Nguyen, Jenny ; Kim, Yechan ; Dvorkin-Gheva, Anna ; Stampfli, Martin R ; Doxey, Andrew C ; Hirota, Jeremy A
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2018-07
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PathFams: statistical detection of pathogen-associated protein domains

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Functional Profiling and Evolutionary Analysis of a Marine Microalgal Virus Pangenome

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The impact of cigarette smoke exposure, COPD, or asthma status on ABC transporter gene expression in human airway epithelial cells

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Ancient Clostridium DNA and variants of tetanus neurotoxins associated with human archaeological remains

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Genomic classification and antimicrobial resistance profiling of Streptococcus pneumoniae and Haemophilus influenzae isolates associated with paediatric otitis media and upper respiratory infection

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Metatranscriptomic profiling reveals pathogen and host response signatures of pediatric acute sinusitis and upper respiratory infection

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MetAnnotate: function-specific taxonomic profiling and comparison of metagenomes

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Exploring the Evolution of Virulence Factors through Bioinformatic Data Mining

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Time Series Resolution of the Fish Necrobiome Reveals a Decomposer Succession Involving Toxigenic Bacterial Pathogens

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Draft Genome Sequences of Two Novel Cellulolytic Streptomyces Strains Isolated from South African Rhizosphere Soil

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AnnoView enables large-scale analysis, comparison, and visualization of microbial gene neighborhoods

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Genomic classification and antimicrobial resistance profiling of Streptococcus pneumoniae and Haemophilus influenza isolates associated with paediatric otitis media and upper respiratory infection

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Identification of divergent botulinum neurotoxin homologs in Paeniclostridium ghonii

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AnnoView enables large-scale analysis, comparison, and visualization of microbial gene neighborhoods

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Gene expression and in situ protein profiling of candidate SARS-CoV-2 receptors in human airway epithelial cells and lung tissue

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The impact of cigarette smoke exposure, and COPD or asthma status on ABC transporter gene expression in human airway epithelial cells

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