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ArticlesPeer ReviewedFull Text
BlasterJS: A novel interactive JavaScript visualisation component for BLAST alignment results
Author / Creator:Blanco-Míguez, Aitor ; Fdez-Riverola, Florentino ; Sánchez, Borja ; Lourenço, Anália
Publisher:United States: Public Library of Science
Journal title:PloS one, 2018-10, Vol.13 (10), p.e0205286-e0205286
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Using Twitter to understand the human bowel disease community: exploratory analysis of key topics
Author / Creator:Pérez-Pérez, Martín ; Pérez-Rodríguez, Gael ; Fdez-Riverola, Florentino ; Lourenço, Anália
Publisher:Canada: JMIR Publications
Journal title:Journal of medical Internet research, 2019-08, Vol.21 (8), p.e12610-e12610
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Polymicrobial Ventilator-Associated Pneumonia: Fighting In Vitro Candida albicans-Pseudomonas aeruginosa Biofilms with Antifungal-Antibacterial Combination Therapy
Author / Creator:Rodrigues, Maria E. ; Lopes, Susana P. ; Pereira, Cláudia R. ; Azevedo, Nuno F. ; Lourenço, Anália ; Henriques, Mariana ; Pereira, Maria O.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2017-01, Vol.12 (1), p.e0170433
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Web scraping technologies in an API world
Author / Creator:Glez-Peña, Daniel ; Lourenço, Anália ; López-Fernández, Hugo ; Reboiro-Jato, Miguel ; Fdez-Riverola, Florentino
Publisher:England: Oxford University Press
Journal title:Briefings in bioinformatics, 2014-09, Vol.15 (5), p.788-797
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Resources and tools for the high-throughput, multi-omic study of intestinal microbiota
Author / Creator:Blanco-Míguez, Aitor ; Fdez-Riverola, Florentino ; Sánchez, Borja ; Lourenço, Anália
Publisher:England: Oxford University Press
Journal title:Briefings in bioinformatics, 2019-05, Vol.20 (3), p.1032-1056
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Leveraging deep learning to detect stance in Spanish tweets on COVID-19 vaccination
Author / Creator:Blanco, Guillermo ; Yáñez Martínez, Rubén ; Lourenço, Anália
Publisher:United States: Oxford University Press
Journal title:JAMIA open, 2025-02, Vol.8 (1), p.ooaf007
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Heteroresistance to colistin in Klebsiella pneumoniae is triggered by small colony variants sub-populations within biofilms
Author / Creator:Silva, Ana ; Sousa, Ana Margarida ; Alves, Diana ; Lourenço, Anália ; Pereira, Maria Olívia
Publisher:United States: Oxford University Press
Journal title:Pathogens and disease, 2016-07, Vol.74 (5), p.ftw036
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Targeted depletion of pks + bacteria from a fecal microbiota using specific antibodies
Author / Creator:Blanco-Míguez, Aitor ; Marcos-Fernández, Raquel ; Guadamuro-García, Lucía ; Fdez-Riverola, Florentino ; Cubiella, Joaquín ; Lourenço, Anália ; Margolles, Abelardo ; Sánchez, Borja
Publisher:United States: American Society for Microbiology
Journal title:mSystems, 2023-06, Vol.8 (3), p.e0007923-e0007923
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Computational resources and strategies to assess single-molecule dynamics of the translation process in S. cerevisiae
Author / Creator:T Magalhães, Beatriz ; Lourenço, Anália ; Azevedo, Nuno F
Publisher:England: Oxford University Press
Journal title:Briefings in bioinformatics, 2021-01, Vol.22 (1), p.219-231
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Exploring anti-quorum sensing and anti-virulence based strategies to fight Candida albicans infections: an in silico approach
Author / Creator:Graínha, Tânia Raquel Rodrigues ; Jorge, Paula Alexandra Silva ; Pérez-Pérez, Martín ; Rodríguez, Gael Pérez ; Pereira, Maria Olívia ; Lourenço, Anália Maria Garcia
Publisher:England: Oxford University Press
Journal title:FEMS yeast research, 2018-05, Vol.18 (3), p.1
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DEWE: A novel tool for executing differential expression RNA-Seq workflows in biomedical research
Author / Creator:López-Fernández, Hugo ; Blanco-Míguez, Aitor ; Fdez-Riverola, Florentino ; Sánchez, Borja ; Lourenço, Anália
Publisher:United States: Elsevier Ltd
Journal title:Computers in biology and medicine, 2019-04, Vol.107, p.197-205
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Correction: A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature
Author / Creator:Lourenço, Anália ; Conover, Michael ; Wong, Andrew ; Nematzadeh, Azadeh ; Pan, Fengxia ; Shatkay, Hagit ; Rocha, Luis M
Publisher:London: BioMed Central
Journal title:BMC bioinformatics, 2012-07, Vol.13 (1), p.180-180
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Pathogenicity phenomena in three model systems: from network mining to emerging system-level properties
Author / Creator:Santos, Nadine Correia ; Pereira, Maria Olívia ; Lourenço, Anália
Publisher:England: Oxford University Press
Journal title:Briefings in bioinformatics, 2015, Vol.16 (1), p.169-182
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Searching for new strategies against biofilm infections: Colistin-AMP combinations against Pseudomonas aeruginosa and Staphylococcus aureus single- and double-species biofilms
Author / Creator:Jorge, Paula ; Grzywacz, Daria ; Kamysz, Wojciech ; Lourenço, Anália ; Pereira, Maria Olívia
Publisher:United States: Public Library of Science
Journal title:PloS one, 2017-03, Vol.12 (3), p.e0174654
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ArticlesPeer ReviewedFull Text
Semantic annotation of biological concepts interplaying microbial cellular responses
Author / Creator:Carreira, Rafael ; Carneiro, Sónia ; Pereira, Rui ; Rocha, Miguel ; Rocha, Isabel ; Ferreira, Eugénio C ; Lourenço, Anália
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2011-11, Vol.12 (1), p.460-460, Article 460
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ArticlesFull Text
Applying a text mining framework to the extraction of numerical parameters from scientific literature in the biotechnology domain
Author / Creator:Santos, André Fernandes ; Nogueira, R. ; Lourenço, Anália
Publisher:Salamanca: Universidad de Salamanca
Journal title:Advances in distributed computing and artificial intelligence journal, 2012, Vol.1 (1 (Special Issue #1)), p.1-8
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Agent-Based Spatiotemporal Simulation of Biomolecular Systems within the Open Source MASON Framework
Author / Creator:Azevedo, Nuno F. ; Fdez-Riverola, Florentino ; Glez-Peña, Daniel ; Pérez-Pérez, Martín ; Pérez-Rodríguez, Gael ; Lourenço, Anália
Publisher:Cairo, Egypt: Hindawi Publishing Corporation
Journal title:BioMed research international, 2015-01, Vol.2015 (2015), p.1-12
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ArticlesPeer ReviewedFull Text
Extraction of Pharmacokinetic Evidence of Drug–Drug Interactions from the Literature
Author / Creator:Kolchinsky, Artemy ; Lourenço, Anália ; Wu, Heng-Yi ; Li, Lang ; Rocha, Luis M.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2015-05, Vol.10 (5), p.e0122199-e0122199
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ArticlesPeer ReviewedFull Text
Application of agent-based modelling to assess single-molecule transport across the cell envelope of E. coli
Author / Creator:Maia, Paulo ; Pérez-Rodríguez, Gael ; Pérez-Pérez, Martín ; Fdez-Riverola, Florentino ; Lourenço, Anália ; Azevedo, Nuno F.
Publisher:Elsevier
Journal title:Computers in biology and medicine, 2019-04, Vol.107, p.218-226
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Erratum to: A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature
Author / Creator:Lourenço, Anália ; Conover, Michael ; Wong, Andrew ; Nematzadeh, Azadeh ; Pan, Fengxia ; Shatkay, Hagit ; Rocha, Luis M
Publisher:BioMed Central Ltd
Journal title:BMC bioinformatics, 2012-07, Vol.13 (1), Article 180
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Showing 1 to 20 of 41 results

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BlasterJS: A novel interactive JavaScript visualisation component for BLAST alignment results

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Using Twitter to understand the human bowel disease community: exploratory analysis of key topics

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Polymicrobial Ventilator-Associated Pneumonia: Fighting In Vitro Candida albicans-Pseudomonas aeruginosa Biofilms with Antifungal-Antibacterial Combination Therapy

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Web scraping technologies in an API world

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Resources and tools for the high-throughput, multi-omic study of intestinal microbiota

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Leveraging deep learning to detect stance in Spanish tweets on COVID-19 vaccination

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Heteroresistance to colistin in Klebsiella pneumoniae is triggered by small colony variants sub-populations within biofilms

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Targeted depletion of pks + bacteria from a fecal microbiota using specific antibodies

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Computational resources and strategies to assess single-molecule dynamics of the translation process in S. cerevisiae

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Exploring anti-quorum sensing and anti-virulence based strategies to fight Candida albicans infections: an in silico approach

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DEWE: A novel tool for executing differential expression RNA-Seq workflows in biomedical research

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Correction: A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature

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Pathogenicity phenomena in three model systems: from network mining to emerging system-level properties

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Searching for new strategies against biofilm infections: Colistin-AMP combinations against Pseudomonas aeruginosa and Staphylococcus aureus single- and double-species biofilms

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Semantic annotation of biological concepts interplaying microbial cellular responses

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Applying a text mining framework to the extraction of numerical parameters from scientific literature in the biotechnology domain

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Agent-Based Spatiotemporal Simulation of Biomolecular Systems within the Open Source MASON Framework

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Extraction of Pharmacokinetic Evidence of Drug–Drug Interactions from the Literature

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Application of agent-based modelling to assess single-molecule transport across the cell envelope of E. coli

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Erratum to: A linear classifier based on entity recognition tools and a statistical approach to method extraction in the protein-protein interaction literature

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