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51 results for Martelli,+Pier+Luigi

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ArticlesPeer ReviewedFull Text
A descriptor-free machine learning framework to improve antigen discovery for bacterial pathogens
Author / Creator:Podda, Marco ; Savojardo, Castrense ; Luigi Martelli, Pier ; Casadio, Rita ; Sîrbu, Alina ; Priami, Corrado ; Brozzi, Alessandro
Publisher:United States: Public Library of Science
Journal title:PloS one, 2025-06, Vol.20 (6), p.e0323895
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PredGPI: a GPI-anchor predictor
Author / Creator:Pierleoni, Andrea ; Martelli, Pier Luigi ; Casadio, Rita
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2008-09, Vol.9 (1), p.392-392, Article 392
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Testing the Capability of Embedding-Based Alignments on the GST Superfamily Classification: The Role of Protein Length
Author / Creator:Vazzana, Gabriele ; Savojardo, Castrense ; Martelli, Pier Luigi ; Casadio, Rita
Publisher:Switzerland: MDPI AG
Journal title:Molecules (Basel, Switzerland), 2024-10, Vol.29 (19), p.4616
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eDGAR: a database of Disease-Gene Associations with annotated Relationships among genes
Author / Creator:Babbi, Giulia ; Martelli, Pier Luigi ; Profiti, Giuseppe ; Bovo, Samuele ; Savojardo, Castrense ; Casadio, Rita
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2017-08, Vol.18 (S5), p.554-554, Article 554
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PhenPath: a tool for characterizing biological functions underlying different phenotypes
Author / Creator:Babbi, Giulia ; Martelli, Pier Luigi ; Casadio, Rita
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2019-07, Vol.20 (S8), p.548-548, Article 548
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Large-scale prediction and analysis of protein sub-mitochondrial localization with DeepMito
Author / Creator:Savojardo, Castrense ; Martelli, Pier Luigi ; Tartari, Giacomo ; Casadio, Rita
Publisher:London: BioMed Central Ltd
Journal title:BMC bioinformatics, 2020-09, Vol.21 (S8), p.1-266, Article 266
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Mapping human disease-associated enzymes into Reactome allows characterization of disease groups and their interactions
Author / Creator:Savojardo, Castrense ; Baldazzi, Davide ; Babbi, Giulia ; Martelli, Pier Luigi ; Casadio, Rita
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2022-10, Vol.12 (1), p.17963-17963, Article 17963
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Merging metabolomics and genomics provides a catalog of genetic factors that influence molecular phenotypes in pigs linking relevant metabolic pathways
Author / Creator:Bovo, Samuele ; Ribani, Anisa ; Fanelli, Flaminia ; Galimberti, Giuliano ; Martelli, Pier Luigi ; Trevisi, Paolo ; Bertolini, Francesca ; Bolner, Matteo ; Casadio, Rita ; Dall’Olio, Stefania ; Gallo, Maurizio ; Luise, Diana ; Mazzoni, Gianluca ; Schiavo, Giuseppina ; Taurisano, Valeria ; Zambonelli, Paolo ; Bosi, Paolo ; Pagotto, Uberto ; Fontanesi, Luca
Publisher:France: BioMed Central Ltd
Journal title:Genetics selection evolution (Paris), 2025-03, Vol.57 (1), p.11-11, Article 11
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Ancient DNA SNP-panel data suggests stability in bluefin tuna genetic diversity despite centuries of fluctuating catches in the eastern Atlantic and Mediterranean
Author / Creator:Andrews, Adam J. ; Puncher, Gregory N. ; Bernal-Casasola, Darío ; Di Natale, Antonio ; Massari, Francesco ; Onar, Vedat ; Toker, Nezir Yaşar ; Hanke, Alex ; Pavey, Scott A. ; Savojardo, Castrense ; Martelli, Pier Luigi ; Casadio, Rita ; Cilli, Elisabetta ; Morales-Muñiz, Arturo ; Mantovani, Barbara ; Tinti, Fausto ; Cariani, Alessia
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2021-10, Vol.11 (1), p.20744-20744, Article 20744
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implications of alternative splicing in the ENCODE protein complement
Author / Creator:Tress, Michael L ; Martelli, Pier Luigi ; Frankish, Adam ; Reeves, Gabrielle A ; Wesselink, Jan Jaap ; Yeats, Corin ; Ólason, Páll ĺsólfur ; Albrecht, Mario ; Hegyi, Hedi ; Giorgetti, Alejandro ; Raimondo, Domenico ; Lagarde, Julien ; Laskowski, Roman A ; López, Gonzalo ; Sadowski, Michael I ; Watson, James D ; Fariselli, Piero ; Rossi, Ivan ; Nagy, Alinda ; Kai, Wang ; Størling, Zenia ; Orsini, Massimiliano ; Assenov, Yassen ; Blankenburg, Hagen ; Huthmacher, Carola ; Ramírez, Fidel ; Schlicker, Andreas ; Denoeud, France ; Jones, Phil ; Kerrien, Samuel ; Orchard, Sandra ; Antonarakis, Stylianos E ; Reymond, Alexandre ; Birney, Ewan ; Brunak, Søren ; Casadio, Rita ; Guigo, Roderic ; Harrow, Jennifer ; Hermjakob, Henning ; Jones, David T ; Lengauer, Thomas ; Orengo, Christine A ; Patthy, László ; Thornton, Janet M ; Tramontano, Anna ; Valencia, Alfonso
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2007-03, Vol.104 (13), p.5495-5500
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Highlighting Human Enzymes Active in Different Metabolic Pathways and Diseases: The Case Study of EC 1.2.3.1 and EC 2.3.1.9
Author / Creator:Babbi, Giulia ; Baldazzi, Davide ; Savojardo, Castrense ; Martelli, Pier Luigi ; Casadio, Rita
Publisher:Basel: MDPI AG
Journal title:Biomedicines, 2020-07, Vol.8 (8), p.250
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Whole Genome Sequence Analysis of Brucella abortus Isolates from Various Regions of South Africa
Author / Creator:Ledwaba, Maphuti Betty ; Glover, Barbara Akorfa ; Matle, Itumeleng ; Profiti, Giuseppe ; Martelli, Pier Luigi ; Casadio, Rita ; Zilli, Katiuscia ; Janowicz, Anna ; Marotta, Francesca ; Garofolo, Giuliano ; van Heerden, Henriette
Publisher:Switzerland: MDPI AG
Journal title:Microorganisms (Basel), 2021-03, Vol.9 (3), p.570
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On the effect of protein conformation diversity in discriminating among neutral and disease related single amino acid substitutions
Author / Creator:Juritz, Ezequiel ; Fornasari, Maria Silvina ; Martelli, Pier Luigi ; Fariselli, Piero ; Casadio, Rita ; Parisi, Gustavo
Publisher:England: BioMed Central
Journal title:BMC genomics, 2012-06, Vol.13 (S4), p.S5-S5, Article S5
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A new decoding algorithm for hidden Markov models improves the prediction of the topology of all-beta membrane proteins
Author / Creator:Fariselli, Piero ; Martelli, Pier Luigi ; Casadio, Rita
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2005-12, Vol.6 (S4), p.S12-S12, Article S12
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In silico prediction of the structure of membrane proteins: Is it feasible?
Author / Creator:Casadio, R.
Publisher:Oxford: Oxford University Press
Journal title:Briefings in bioinformatics, 2003-12, Vol.4 (4), p.341-348
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On the critical review of five machine learning-based algorithms for predicting protein stability changes upon mutation
Author / Creator:Savojardo, Castrense ; Martelli, Pier Luigi ; Casadio, Rita ; Fariselli, Piero
Publisher:England: Oxford University Press
Journal title:Briefings in bioinformatics, 2021-01, Vol.22 (1), p.601-603
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Huntingtin: A Protein with a Peculiar Solvent Accessible Surface
Author / Creator:Babbi, Giulia ; Savojardo, Castrense ; Martelli, Pier Luigi ; Casadio, Rita
Publisher:Switzerland: MDPI AG
Journal title:International journal of molecular sciences, 2021-03, Vol.22 (6), p.2878
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DOME: recommendations for supervised machine learning validation in biology
Author / Creator:Walsh, Ian ; Fishman, Dmytro ; Garcia-Gasulla, Dario ; Titma, Tiina ; Pollastri, Gianluca ; Harrow, Jennifer ; Psomopoulos, Fotis E. ; Tosatto, Silvio C. E.
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2021-10, Vol.18 (10), p.1122-1127
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Functional and Structural Features of Disease-Related Protein Variants
Author / Creator:Savojardo, Castrense ; Babbi, Giulia ; Martelli, Pier Luigi ; Casadio, Rita
Publisher:Switzerland: MDPI AG
Journal title:International journal of molecular sciences, 2019-03, Vol.20 (7), p.1530
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WS-SNPs&GO: a web server for predicting the deleterious effect of human protein variants using functional annotation
Author / Creator:Capriotti, Emidio ; Calabrese, Remo ; Fariselli, Piero ; Martelli, Pier ; Altman, Russ B ; Casadio, Rita
Publisher:England: BioMed Central
Journal title:BMC genomics, 2013, Vol.14 (Suppl 3), p.S6-S6
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Showing 1 to 20 of 51 results

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A descriptor-free machine learning framework to improve antigen discovery for bacterial pathogens

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PredGPI: a GPI-anchor predictor

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Testing the Capability of Embedding-Based Alignments on the GST Superfamily Classification: The Role of Protein Length

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eDGAR: a database of Disease-Gene Associations with annotated Relationships among genes

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PhenPath: a tool for characterizing biological functions underlying different phenotypes

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Large-scale prediction and analysis of protein sub-mitochondrial localization with DeepMito

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Mapping human disease-associated enzymes into Reactome allows characterization of disease groups and their interactions

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Merging metabolomics and genomics provides a catalog of genetic factors that influence molecular phenotypes in pigs linking relevant metabolic pathways

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Ancient DNA SNP-panel data suggests stability in bluefin tuna genetic diversity despite centuries of fluctuating catches in the eastern Atlantic and Mediterranean

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implications of alternative splicing in the ENCODE protein complement

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Highlighting Human Enzymes Active in Different Metabolic Pathways and Diseases: The Case Study of EC 1.2.3.1 and EC 2.3.1.9

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Whole Genome Sequence Analysis of Brucella abortus Isolates from Various Regions of South Africa

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On the effect of protein conformation diversity in discriminating among neutral and disease related single amino acid substitutions

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A new decoding algorithm for hidden Markov models improves the prediction of the topology of all-beta membrane proteins

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In silico prediction of the structure of membrane proteins: Is it feasible?

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On the critical review of five machine learning-based algorithms for predicting protein stability changes upon mutation

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Huntingtin: A Protein with a Peculiar Solvent Accessible Surface

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DOME: recommendations for supervised machine learning validation in biology

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Functional and Structural Features of Disease-Related Protein Variants

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WS-SNPs&GO: a web server for predicting the deleterious effect of human protein variants using functional annotation

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