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ArticlesPeer ReviewedFull Text
Convergent gain and loss of genomic islands drive lifestyle changes in plant-associated Pseudomonas
Author / Creator:Melnyk, Ryan A. ; Hossain, Sarzana S. ; Haney, Cara H.
Publisher:London: Nature Publishing Group UK
Journal title:The ISME Journal, 2019-06, Vol.13 (6), p.1575-1588
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ArticlesPeer ReviewedFull Text
Filling gaps in bacterial amino acid biosynthesis pathways with high-throughput genetics
Author / Creator:Price, Morgan N. ; Zane, Grant M. ; Kuehl, Jennifer V. ; Melnyk, Ryan A. ; Wall, Judy D. ; Deutschbauer, Adam M. ; Arkin, Adam P.
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2018-01, Vol.14 (1), p.e1007147-e1007147
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ArticlesPeer ReviewedFull Text
Surface multiheme c-type cytochromes from Thermincola potens and implications for respiratory metal reduction by Gram-positive bacteria
Author / Creator:Carlson, Hans K. ; Iavarone, Anthony T. ; Gorur, Amita ; Yeo, Boon Siang ; Tran, Rosalie ; Melnyk, Ryan A. ; Mathies, Richard A. ; Auer, Manfred ; Coates, John D.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2012-01, Vol.109 (5), p.1702-1707
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ArticlesPeer ReviewedFull Text
MamO Is a Repurposed Serine Protease that Promotes Magnetite Biomineralization through Direct Transition Metal Binding in Magnetotactic Bacteria
Author / Creator:Hershey, David M. ; Ren, Xuefeng ; Melnyk, Ryan A. ; Browne, Patrick J. ; Ozyamak, Ertan ; Jones, Stephanie R. ; Chang, Michelle C. Y. ; Hurley, James H. ; Komeili, Arash
Publisher:United States: Public Library of Science
Journal title:PLoS biology, 2016-03, Vol.14 (3), p.e1002402
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ArticlesPeer ReviewedFull Text
Plasmid-powered evolutionary transitions
Author / Creator:Melnyk, Ryan A ; Haney, Cara H
Publisher:England: eLife Sciences Publications Ltd
Journal title:eLife, 2017-12, Vol.6
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ArticlesPeer ReviewedFull Text
Correction: Filling gaps in bacterial amino acid biosynthesis pathways with high-throughput genetics
Author / Creator:Price, Morgan N. ; Zane, Grant M. ; Kuehl, Jennifer V. ; Melnyk, Ryan A. ; Wall, Judy D. ; Deutschbauer, Adam M. ; Arkin, Adam P.
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2019-04, Vol.15 (4), p.e1008106-e1008106
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ArticlesPeer ReviewedFull Text
The Perchlorate Reduction Genomic Island: Mechanisms and Pathways of Evolution by Horizontal Gene Transfer
Author / Creator:Melnyk, Ryan A. ; Coates, John D.
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2015-10, Vol.16 (1), p.862-862, Article 862
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ArticlesPeer ReviewedFull Text
Bacterial genomics of plant adaptation
Author / Creator:Melnyk, Ryan A. ; Haney, Cara H.
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2018-01, Vol.50 (1), p.2-4
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ArticlesPeer ReviewedFull Text
Gastric acid and escape to systemic circulation represent major bottlenecks to host infection by Citrobacter rodentium
Author / Creator:Woodward, Sarah E. ; Vogt, Stefanie L. ; Peña-Díaz, Jorge ; Melnyk, Ryan A. ; Cirstea, Mihai ; Serapio-Palacios, Antonio ; Neufeld, Laurel M. P. ; Huus, Kelsey E. ; Wang, Madeline A. ; Haney, Cara H. ; Finlay, B. Brett
Publisher:London: Nature Publishing Group UK
Journal title:The ISME Journal, 2023-01, Vol.17 (1), p.36-46
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ArticlesPeer ReviewedFull Text
Mutant phenotypes for thousands of bacterial genes of unknown function
Author / Creator:Price, Morgan N. ; Wetmore, Kelly M. ; Waters, R. Jordan ; Callaghan, Mark ; Ray, Jayashree ; Liu, Hualan ; Kuehl, Jennifer V. ; Melnyk, Ryan A. ; Lamson, Jacob S. ; Suh, Yumi ; Carlson, Hans K. ; Esquivel, Zuelma ; Sadeeshkumar, Harini ; Chakraborty, Romy ; Zane, Grant M. ; Rubin, Benjamin E. ; Wall, Judy D. ; Visel, Axel ; Bristow, James ; Blow, Matthew J. ; Arkin, Adam P. ; Deutschbauer, Adam M.
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2018-05, Vol.557 (7706), p.503-509
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ArticlesFull Text
Filling Gaps in Bacterial Amino Acid Biosynthesis Pathways with High-throughput Genetics
Author / Creator:Price, Morgan ; Zane, Grant M ; Kuehl, Jennifer V ; Melnyk, Ryan A ; Wall, Judy D ; Deutschbauer, Adam M ; Arkin, Adam P
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2017-09
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ArticlesFull Text
A genome-wide screen identifies genes in rhizosphere-associated Pseudomonas required to evade plant defenses
Author / Creator:Liu, Zhexian ; Beskrovnaya, Polina ; Melnyk, Ryan A ; Hossain, Sarzana S ; Khorasani, Sophie ; O'sullivan, Lucy R ; Wiesmann, Christina L ; Bush, Jenifer ; Jo l D Richard ; Haney, Cara H
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2018-07
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ArticlesFull Text
Deep Annotation of Protein Function across Diverse Bacteria from Mutant Phenotypes
Author / Creator:Price, Morgan N ; Wetmore, Kelly M ; Robert Jordan Waters ; Callaghan, Mark ; Ray, Jayashree ; Kuehl, Jennifer V ; Melnyk, Ryan A ; Lamson, Jacob S ; Suh, Yumi ; Esquivel, Zuelma ; Sadeeshkumar, Harini ; Chakraborty, Romy ; Rubin, Benjamin E ; Bristow, James ; Blow, Matthew J ; Arkin, Adam P ; Deutschbauer, Adam M
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2016-08
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ArticlesFull Text
Convergent gain and loss of genomic islands drives lifestyle changes in plant-associated Pseudomonas
Author / Creator:Melnyk, Ryan A ; Hossain, Sarzana S ; Haney, Cara H
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2019-01
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ArticlesFull Text
Comparative genomics identified a genetic locus in plant-associated Pseudomonas spp. that is necessary for induced systemic susceptibility
Author / Creator:Beskrovnaya, Polina ; Melnyk, Ryan A ; Liu, Zhexian ; Liu, Yang ; Higgins, Melanie A ; Song, Yi ; Ryan, Katherine ; Haney, Cara H
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2020-04
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Convergent gain and loss of genomic islands drive lifestyle changes in plant-associated Pseudomonas

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Filling gaps in bacterial amino acid biosynthesis pathways with high-throughput genetics

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Surface multiheme c-type cytochromes from Thermincola potens and implications for respiratory metal reduction by Gram-positive bacteria

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MamO Is a Repurposed Serine Protease that Promotes Magnetite Biomineralization through Direct Transition Metal Binding in Magnetotactic Bacteria

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Plasmid-powered evolutionary transitions

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Correction: Filling gaps in bacterial amino acid biosynthesis pathways with high-throughput genetics

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The Perchlorate Reduction Genomic Island: Mechanisms and Pathways of Evolution by Horizontal Gene Transfer

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Bacterial genomics of plant adaptation

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Gastric acid and escape to systemic circulation represent major bottlenecks to host infection by Citrobacter rodentium

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Mutant phenotypes for thousands of bacterial genes of unknown function

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Filling Gaps in Bacterial Amino Acid Biosynthesis Pathways with High-throughput Genetics

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A genome-wide screen identifies genes in rhizosphere-associated Pseudomonas required to evade plant defenses

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Deep Annotation of Protein Function across Diverse Bacteria from Mutant Phenotypes

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Convergent gain and loss of genomic islands drives lifestyle changes in plant-associated Pseudomonas

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Comparative genomics identified a genetic locus in plant-associated Pseudomonas spp. that is necessary for induced systemic susceptibility

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