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ArticlesPeer ReviewedFull Text
Geographic and Genetic Population Differentiation of the Amazonian Chocolate Tree (Theobroma cacao L)
Author / Creator:Motamayor, Juan C. ; Lachenaud, Philippe ; da Silva e Mota, Jay Wallace ; Loor, Rey ; Kuhn, David N. ; Brown, J. Steven ; Schnell, Raymond J.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2008-10, Vol.3 (10), p.e3311-e3311
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ArticlesPeer ReviewedFull Text
Genetic differentiation and intrinsic genomic features explain variation in recombination hotspots among cocoa tree populations
Author / Creator:Schwarzkopf, Enrique J. ; Motamayor, Juan C. ; Cornejo, Omar E.
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2020-04, Vol.21 (1), p.332-332, Article 332
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ArticlesPeer ReviewedFull Text
The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color
Author / Creator:Motamayor, Juan C ; Mockaitis, Keithanne ; Schmutz, Jeremy ; Haiminen, Niina ; III, Donald Livingstone ; Cornejo, Omar ; Findley, Seth D ; Zheng, Ping ; Utro, Filippo ; Royaert, Stefan ; Saski, Christopher ; Jenkins, Jerry ; Podicheti, Ram ; Zhao, Meixia ; Scheffler, Brian E ; Stack, Joseph C ; Feltus, Frank A ; Mustiga, Guiliana M ; Amores, Freddy ; Phillips, Wilbert ; Marelli, Jean Philippe ; May, Gregory D ; Shapiro, Howard ; Ma, Jianxin ; Bustamante, Carlos D ; Schnell, Raymond J ; Main, Dorrie ; Gilbert, Don ; Parida, Laxmi ; Kuhn, David N
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology (Online Edition), 2013-10, Vol.14 (6), p.r53-r53, Article r53
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ArticlesPeer ReviewedFull Text
Population genomic analyses of the chocolate tree, Theobroma cacao L., provide insights into its domestication process
Author / Creator:Cornejo, Omar E. ; Yee, Muh-Ching ; Dominguez, Victor ; Andrews, Mary ; Sockell, Alexandra ; Strandberg, Erika ; Livingstone, Donald ; Stack, Conrad ; Romero, Alberto ; Umaharan, Pathmanathan ; Royaert, Stefan ; Tawari, Nilesh R. ; Ng, Pauline ; Gutierrez, Osman ; Phillips, Wilbert ; Mockaitis, Keithanne ; Bustamante, Carlos D. ; Motamayor, Juan C.
Publisher:London: Nature Publishing Group UK
Journal title:Communications biology, 2018-01, Vol.1 (1), p.167-167, Article 167
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ArticlesPeer ReviewedFull Text
Identification and mapping of conserved ortholog set (COS) II sequences of cacao and their conversion to SNP markers for marker-assisted selection in Theobroma cacao and comparative genomics studies
Author / Creator:Kuhn, David N ; Livingstone, Don III ; Main, Dorrie ; Zheng, Ping ; Saski, Chris ; Feltus, F. Alex ; Mockaitis, Keithanne ; Farmer, Andrew D ; May, Gregory D ; Schnell, Raymond J ; Motamayor, Juan C
Publisher:Berlin/Heidelberg: Springer-Verlag
Journal title:Tree genetics & genomes, 2012-02, Vol.8 (1), p.97-111
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ArticlesPeer ReviewedFull Text
Genetic diversity assessment of sub-samples of cacao, Theobroma cacao L. collections in West Africa using simple sequence repeats marker
Author / Creator:Aikpokpodion, Peter O ; Motamayor, Juan C ; Adetimirin, Victor O ; Adu-Ampomah, Yaw ; Ingelbrecht, Ivan ; Eskes, Albertus B ; Schnell, Raymond J ; Kolesnikova-Allen, Maria
Publisher:Berlin/Heidelberg: Berlin/Heidelberg : Springer-Verlag
Journal title:Tree genetics & genomes, 2009-10, Vol.5 (4), p.699-711
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ArticlesPeer ReviewedFull Text
Genetic diversity and structure of farm and GenBank accessions of cacao (Theobroma cacao L.) in Cameroon revealed by microsatellite markers
Author / Creator:Efombagn, Ives Bruno M ; Motamayor, Juan C ; Sounigo, Olivier ; Eskes, Albertus B ; Nyassé, Salomon ; Cilas, Christian ; Schnell, Ray ; Manzanares-Dauleux, Maria J ; Kolesnikova-Allen, Maria
Publisher:Berlin/Heidelberg: Berlin/Heidelberg : Springer-Verlag
Journal title:Tree genetics & genomes, 2008-10, Vol.4 (4), p.821-831
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ArticlesPeer ReviewedFull Text
A computer simulation study on the number of loci and trees required to estimate genetic variability in cacao (Theobroma cacao L.)
Author / Creator:Cervantes-Martinez, Cuauhtemoc ; Brown, J. Steven ; Schnell, Raymond ; Motamayor, Juan C. ; Meerow, Alan W. ; Zhang, Dapeng
Publisher:Heidelberg: Springer Nature B.V
Journal title:Tree genetics & genomes, 2006-07, Vol.2 (3), p.152-164
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ArticlesPeer ReviewedFull Text
Analysis of molecular diversity in Crinipellis perniciosa with AFLP markers
Author / Creator:Ploetz, R.C ; Schnell, R.J ; Ying, Z ; Zheng, Q ; Olano, C.T ; Motamayor, J.C ; Johnson, E.S
Publisher:Dordrecht: Springer
Journal title:European journal of plant pathology, 2005-04, Vol.111 (4), p.317-326
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ArticlesFull Text
Genetic differentiation and intrinsic genomic features explain variation in recombination hotspots among cocoa tree populations
Author / Creator:Schwarzkopf, Enrique J ; Motamayor, Juan C ; Cornejo, Omar Eduardo
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2020-01
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ArticlesPeer ReviewedFull Text
ARG-based genome-wide analysis of cacao cultivars
Author / Creator:Utro, Filippo ; Cornejo, Omar Eduardo ; Livingstone, Donald ; Motamayor, Juan Carlos ; Parida, Laxmi
Publisher:England: BioMed Central
Journal title:BMC bioinformatics, 2012-12, Vol.13 (S19), p.S17-S17, Article S17
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ArticlesPeer ReviewedFull Text
A genetically anchored physical framework for Theobroma cacao cv. Matina 1-6
Author / Creator:Saski, Christopher A ; Feltus, Frank A ; Staton, Margaret E ; Blackmon, Barbara P ; Ficklin, Stephen P ; Kuhn, David N ; Schnell, Raymond J ; Shapiro, Howard ; Motamayor, Juan Carlos
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2011-08, Vol.12 (1), p.413-413, Article 413
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ArticlesPeer ReviewedFull Text
Genetic diversity and structure of farm and GenBank accessions of cacao (Theobroma cacao L.) in Cameroon revealed by microsatellite markers
Author / Creator:Efombagn, Ives Bruno M ; Motamayor, Juan C ; Sounigo, Olivier ; Eskes, Albertus B ; Nyassé, Salomon ; Cilas, Christian ; Schnell, Ray ; Manzanares, Maria ; Kolesnikova-Allen, Maria
Publisher:Springer Verlag
Journal title:Tree genetics & genomes, 2008, Vol.4, p.821-831
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ArticlesFull Text
Genomic insights into the domestication of the chocolate tree, Theobroma cacao L
Author / Creator:Cornejo, Omar E ; Muh-Ching Yee ; Dominguez, Victor ; Andrews, Mary ; Sockell, Alexandra ; Strandberg, Erika ; Livingstone, Donald ; Stack, Conrad ; Romero, Alberto ; Umaharan, Pathmanathan ; Royaert, Stefan ; Tawari, Nilesh R ; Ng, Pauline ; Schnell, Ray ; Phillips, Wilbert ; Mockaitis, Keithanne ; Bustamante, Carlos D ; Motamayor, Juan Carlos
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2017-11
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Geographic and Genetic Population Differentiation of the Amazonian Chocolate Tree (Theobroma cacao L)

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Genetic differentiation and intrinsic genomic features explain variation in recombination hotspots among cocoa tree populations

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The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color

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Population genomic analyses of the chocolate tree, Theobroma cacao L., provide insights into its domestication process

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Identification and mapping of conserved ortholog set (COS) II sequences of cacao and their conversion to SNP markers for marker-assisted selection in Theobroma cacao and comparative genomics studies

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Genetic diversity assessment of sub-samples of cacao, Theobroma cacao L. collections in West Africa using simple sequence repeats marker

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Genetic diversity and structure of farm and GenBank accessions of cacao (Theobroma cacao L.) in Cameroon revealed by microsatellite markers

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A computer simulation study on the number of loci and trees required to estimate genetic variability in cacao (Theobroma cacao L.)

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Analysis of molecular diversity in Crinipellis perniciosa with AFLP markers

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Genetic differentiation and intrinsic genomic features explain variation in recombination hotspots among cocoa tree populations

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ARG-based genome-wide analysis of cacao cultivars

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A genetically anchored physical framework for Theobroma cacao cv. Matina 1-6

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Genetic diversity and structure of farm and GenBank accessions of cacao (Theobroma cacao L.) in Cameroon revealed by microsatellite markers

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Genomic insights into the domestication of the chocolate tree, Theobroma cacao L

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