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Metaproteomics reveals associations between microbiome and intestinal extracellular vesicle proteins in pediatric inflammatory bowel disease
Author / Creator:Zhang, Xu ; Deeke, Shelley A. ; Ning, Zhibin ; Starr, Amanda E. ; Butcher, James ; Li, Jennifer ; Mayne, Janice ; Cheng, Kai ; Liao, Bo ; Li, Leyuan ; Singleton, Ruth ; Mack, David ; Stintzi, Alain ; Figeys, Daniel
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2018-07, Vol.9 (1), p.2873-14, Article 2873
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Widespread protein lysine acetylation in gut microbiome and its alterations in patients with Crohn’s disease
Author / Creator:Zhang, Xu ; Ning, Zhibin ; Mayne, Janice ; Yang, Yidai ; Deeke, Shelley A. ; Walker, Krystal ; Farnsworth, Charles L. ; Stokes, Matthew P. ; Couture, Jean-François ; Mack, David ; Stintzi, Alain ; Figeys, Daniel
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2020-08, Vol.11 (1), p.4120-4120, Article 4120
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An in vitro model maintaining taxon-specific functional activities of the gut microbiome
Author / Creator:Li, Leyuan ; Abou-Samra, Elias ; Ning, Zhibin ; Zhang, Xu ; Mayne, Janice ; Wang, Janet ; Cheng, Kai ; Walker, Krystal ; Stintzi, Alain ; Figeys, Daniel
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2019-09, Vol.10 (1), p.4146-11, Article 4146
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RapidAIM: a culture- and metaproteomics-based Rapid Assay of Individual Microbiome responses to drugs
Author / Creator:Li, Leyuan ; Ning, Zhibin ; Zhang, Xu ; Mayne, Janice ; Cheng, Kai ; Stintzi, Alain ; Figeys, Daniel
Publisher:England: BioMed Central Ltd
Journal title:Microbiome, 2020-03, Vol.8 (1), p.33-33, Article 33
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MetaLab: an automated pipeline for metaproteomic data analysis
Author / Creator:Cheng, Kai ; Ning, Zhibin ; Zhang, Xu ; Li, Leyuan ; Liao, Bo ; Mayne, Janice ; Stintzi, Alain ; Figeys, Daniel
Publisher:England: BioMed Central Ltd
Journal title:Microbiome, 2017-12, Vol.5 (1), p.157-157, Article 157
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Revealing proteome-level functional redundancy in the human gut microbiome using ultra-deep metaproteomics
Author / Creator:Li, Leyuan ; Wang, Tong ; Ning, Zhibin ; Zhang, Xu ; Butcher, James ; Serrana, Joeselle M. ; Simopoulos, Caitlin M. A. ; Mayne, Janice ; Stintzi, Alain ; Mack, David R. ; Liu, Yang-Yu ; Figeys, Daniel
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2023-06, Vol.14 (1), p.3428-14, Article 3428
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Widespread splicing changes in human brain development and aging
Author / Creator:Mazin, Pavel ; Xiong, Jieyi ; Liu, Xiling ; Yan, Zheng ; Zhang, Xiaoyu ; Li, Mingshuang ; He, Liu ; Somel, Mehmet ; Yuan, Yuan ; Phoebe Chen, Yi‐Ping ; Li, Na ; Hu, Yuhui ; Fu, Ning ; Ning, Zhibin ; Zeng, Rong ; Yang, Hongyi ; Chen, Wei ; Gelfand, Mikhail ; Khaitovich, Philipp
Publisher:London: Nature Publishing Group UK
Journal title:Molecular systems biology, 2013, Vol.9 (1), p.633-n/a
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PhyloFunc: phylogeny-informed functional distance as a new ecological metric for metaproteomic data analysis
Author / Creator:Wang, Luman ; Simopoulos, Caitlin M A ; Serrana, Joeselle M ; Ning, Zhibin ; Li, Yutong ; Sun, Boyan ; Yuan, Jinhui ; Figeys, Daniel ; Li, Leyuan
Publisher:England: BioMed Central Ltd
Journal title:Microbiome, 2025-02, Vol.13 (1), p.50-13
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Examining the Effects of an Anti-Salmonella Bacteriophage Preparation, BAFASAL®, on Ex-Vivo Human Gut Microbiome Composition and Function Using a Multi-Omics Approach
Author / Creator:Mayne, Janice ; Zhang, Xu ; Butcher, James ; Walker, Krystal ; Ning, Zhibin ; Wójcik, Ewelina ; Dastych, Jarosław ; Stintzi, Alain ; Figeys, Daniel
Publisher:Switzerland: MDPI AG
Journal title:Viruses, 2021-08, Vol.13 (9), p.1734
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Aging Disrupts the Circadian Patterns of Protein Expression in the Murine Hippocampus
Author / Creator:Adler, Paula ; Chiang, Cheng-Kang ; Mayne, Janice ; Ning, Zhibin ; Zhang, Xu ; Xu, Bo ; Cheng, Hai-Ying Mary ; Figeys, Daniel
Publisher:Switzerland: Frontiers Research Foundation
Journal title:Frontiers in aging neuroscience, 2020-01, Vol.11, p.368-368
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The Proteomic Landscape of the Suprachiasmatic Nucleus Clock Reveals Large-Scale Coordination of Key Biological Processes
Author / Creator:Chiang, Cheng-Kang ; Mehta, Neel ; Patel, Abhilasha ; Zhang, Peng ; Ning, Zhibin ; Mayne, Janice ; Sun, Warren Y. L. ; Cheng, Hai-Ying M. ; Figeys, Daniel
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2014-10, Vol.10 (10), p.e1004695-e1004695
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iMetaLab Suite: A one‐stop toolset for metaproteomics
Author / Creator:Li, Leyuan ; Ning, Zhibin ; Cheng, Kai ; Zhang, Xu ; Simopoulos, Caitlin M. A. ; Figeys, Daniel
Publisher:Australia: John Wiley & Sons, Inc
Journal title:iMeta, 2022-06, Vol.1 (2), p.e25-n/a
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Grape polyphenols reduce fasting glucose and increase hyocholic acid in healthy humans: a meta-omics study
Author / Creator:Mezhibovsky, Esther ; Wu, Guojun ; Wu, Yue ; Ning, Zhibin ; Bacalia, Karen ; Sadangi, Sriya ; Patel, Riddhi ; Poulev, Alexander ; Duran, Rocio M. ; Macor, Marie ; Coyle, Susette ; Lam, Yan Y. ; Raskin, Ilya ; Figeys, Daniel ; Zhao, Liping ; Roopchand, Diana E.
Publisher:London: Nature Publishing Group UK
Journal title:NPJ science of food, 2025-05, Vol.9 (1), p.87-20, Article 87
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MetaProClust-MS1: an MS1 Profiling Approach for Large-Scale Microbiome Screening
Author / Creator:Simopoulos, Caitlin M. A. ; Ning, Zhibin ; Li, Leyuan ; Khamis, Mona M. ; Zhang, Xu ; Lavallée-Adam, Mathieu ; Figeys, Daniel
Publisher:United States: American Society for Microbiology
Journal title:mSystems, 2022-08, Vol.7 (4), p.e0038122-e0038122
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mChIP-KAT-MS, a method to map protein interactions and acetylation sites for lysine acetyltransferases
Author / Creator:Mitchell, Leslie ; Huard, Sylvain ; Cotrut, Michael ; Pourhanifeh-Lemeri, Roghayeh ; Steunou, Anne-Lise ; Hamza, Akil ; Lambert, Jean-Philippe ; Zhou, Hu ; Ning, Zhibin ; Basu, Amrita ; Côté, Jacques ; Figeys, Daniel A. ; Baetz, Kristin
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2013-04, Vol.110 (17), p.E1641-E1650
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The microbiologist's guide to metaproteomics
Author / Creator:Van Den Bossche, Tim ; Armengaud, Jean ; Benndorf, Dirk ; Blakeley‐Ruiz, Jose Alfredo ; Brauer, Madita ; Cheng, Kai ; Creskey, Marybeth ; Figeys, Daniel ; Grenga, Lucia ; Griffin, Timothy J. ; Henry, Céline ; Hettich, Robert L. ; Holstein, Tanja ; Jagtap, Pratik D. ; Jehmlich, Nico ; Kim, Jonghyun ; Kleiner, Manuel ; Kunath, Benoit J. ; Malliet, Xuxa ; Martens, Lennart ; Mehta, Subina ; Mesuere, Bart ; Ning, Zhibin ; Tanca, Alessandro ; Uzzau, Sergio ; Verschaffelt, Pieter ; Wang, Jing ; Wilmes, Paul ; Zhang, Xu ; Zhang, Xin ; Li, Leyuan
Publisher:Australia: John Wiley and Sons Inc
Journal title:iMeta, 2025-06, Vol.4 (3), p.e70031-n/a
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Staufen1 controls mitochondrial metabolism via HIF2α in embryonal rhabdomyosarcoma and promotes tumorigenesis
Author / Creator:Almasi, Shekoufeh ; SarmastiEmami, Sahar ; Baird, Stephen ; Ning, Zhibin ; Figeys, Daniel ; Côté, Jocelyn ; Cowan, Kyle N. ; Jasmin, Bernard J.
Publisher:Cham: Springer International Publishing
Journal title:Cellular and molecular life sciences : CMLS, 2023-11, Vol.80 (11), p.328-328, Article 328
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MetaPro-IQ: a universal metaproteomic approach to studying human and mouse gut microbiota
Author / Creator:Zhang, Xu ; Ning, Zhibin ; Mayne, Janice ; Moore, Jasmine I. ; Li, Jennifer ; Butcher, James ; Deeke, Shelley Ann ; Chen, Rui ; Chiang, Cheng-Kang ; Wen, Ming ; Mack, David ; Stintzi, Alain ; Figeys, Daniel
Publisher:England: BioMed Central Ltd
Journal title:Microbiome, 2016-06, Vol.4 (1), p.31-31, Article 31
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Proteomic analysis of ascending colon biopsies from a paediatric inflammatory bowel disease inception cohort identifies protein biomarkers that differentiate Crohn's disease from UC
Author / Creator:Starr, Amanda E ; Deeke, Shelley A ; Ning, Zhibin ; Chiang, Cheng-Kang ; Zhang, Xu ; Mottawea, Walid ; Singleton, Ruth ; Benchimol, Eric I ; Wen, Ming ; Mack, David R ; Stintzi, Alain ; Figeys, Daniel
Publisher:England: BMJ Publishing Group LTD
Journal title:Gut, 2017-09, Vol.66 (9), p.1573-1583
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Associations Between Soluble LDLR and Lipoproteins in a White Cohort and the Effect of PCSK9 Loss-of-Function
Author / Creator:Mayne, Janice ; Ooi, Teik Chye ; Tepliakova, Lioudmila ; Seebun, Deeptee ; Walker, Krystal ; Mohottalage, Dhanuddara ; Ning, Zhibin ; Abujrad, Hussein ; Mbikay, Majambu ; Wassef, Hanny ; Chrétien, Michel ; Figeys, Daniel
Publisher:United States: Copyright Oxford University Press
Journal title:The journal of clinical endocrinology and metabolism, 2018-09, Vol.103 (9), p.3486-3495
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Showing 1 to 20 of 45 results

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Metaproteomics reveals associations between microbiome and intestinal extracellular vesicle proteins in pediatric inflammatory bowel disease

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Widespread protein lysine acetylation in gut microbiome and its alterations in patients with Crohn’s disease

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An in vitro model maintaining taxon-specific functional activities of the gut microbiome

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RapidAIM: a culture- and metaproteomics-based Rapid Assay of Individual Microbiome responses to drugs

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MetaLab: an automated pipeline for metaproteomic data analysis

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Revealing proteome-level functional redundancy in the human gut microbiome using ultra-deep metaproteomics

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Widespread splicing changes in human brain development and aging

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PhyloFunc: phylogeny-informed functional distance as a new ecological metric for metaproteomic data analysis

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Examining the Effects of an Anti-Salmonella Bacteriophage Preparation, BAFASAL®, on Ex-Vivo Human Gut Microbiome Composition and Function Using a Multi-Omics Approach

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Aging Disrupts the Circadian Patterns of Protein Expression in the Murine Hippocampus

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The Proteomic Landscape of the Suprachiasmatic Nucleus Clock Reveals Large-Scale Coordination of Key Biological Processes

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iMetaLab Suite: A one‐stop toolset for metaproteomics

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Grape polyphenols reduce fasting glucose and increase hyocholic acid in healthy humans: a meta-omics study

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MetaProClust-MS1: an MS1 Profiling Approach for Large-Scale Microbiome Screening

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mChIP-KAT-MS, a method to map protein interactions and acetylation sites for lysine acetyltransferases

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The microbiologist's guide to metaproteomics

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Staufen1 controls mitochondrial metabolism via HIF2α in embryonal rhabdomyosarcoma and promotes tumorigenesis

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MetaPro-IQ: a universal metaproteomic approach to studying human and mouse gut microbiota

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Proteomic analysis of ascending colon biopsies from a paediatric inflammatory bowel disease inception cohort identifies protein biomarkers that differentiate Crohn's disease from UC

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Associations Between Soluble LDLR and Lipoproteins in a White Cohort and the Effect of PCSK9 Loss-of-Function

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