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24 results for Oskotsky,+Tomiko

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Personalizing routine lab tests with machine learning
Author / Creator:Tang, Alice ; Oskotsky, Tomiko ; Sirota, Marina
Publisher:New York: Nature Publishing Group US
Journal title:Nature medicine, 2021-09, Vol.27 (9), p.1514-1515
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Deep phenotyping of Alzheimer’s disease leveraging electronic medical records identifies sex-specific clinical associations
Author / Creator:Tang, Alice S. ; Oskotsky, Tomiko ; Havaldar, Shreyas ; Mantyh, William G. ; Bicak, Mesude ; Solsberg, Caroline Warly ; Woldemariam, Sarah ; Zeng, Billy ; Hu, Zicheng ; Oskotsky, Boris ; Dubal, Dena ; Allen, Isabel E. ; Glicksberg, Benjamin S. ; Sirota, Marina
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2022-02, Vol.13 (1), p.675-15, Article 675
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Sex-Stratified Single-Cell RNA-Seq Analysis Identifies Sex-Specific and Cell Type-Specific Transcriptional Responses in Alzheimer’s Disease Across Two Brain Regions
Author / Creator:Belonwu, Stella A. ; Li, Yaqiao ; Bunis, Daniel ; Rao, Arjun Arkal ; Solsberg, Caroline Warly ; Tang, Alice ; Fragiadakis, Gabriela K. ; Dubal, Dena B. ; Oskotsky, Tomiko ; Sirota, Marina
Publisher:New York: Springer US
Journal title:Molecular neurobiology, 2022-01, Vol.59 (1), p.276-293
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Transcriptomics-based drug repositioning pipeline identifies therapeutic candidates for COVID-19
Author / Creator:Le, Brian L. ; Andreoletti, Gaia ; Oskotsky, Tomiko ; Vallejo-Gracia, Albert ; Rosales, Romel ; Yu, Katharine ; Kosti, Idit ; Leon, Kristoffer E. ; Bunis, Daniel G. ; Li, Christine ; Kumar, G. Renuka ; White, Kris M. ; García-Sastre, Adolfo ; Ott, Melanie ; Sirota, Marina
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2021-06, Vol.11 (1), p.12310-14, Article 12310
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Target-agnostic drug prediction integrated with medical record analysis uncovers differential associations of statins with increased survival in COVID-19 patients
Author / Creator:Sperry, Megan M. ; Oskotsky, Tomiko T. ; Marić, Ivana ; Kaushal, Shruti ; Takeda, Takako ; Horvath, Viktor ; Powers, Rani K. ; Rodas, Melissa ; Furlong, Brooke ; Soong, Mercy ; Prabhala, Pranav ; Goyal, Girija ; Carlson, Kenneth E. ; Wong, Ronald J. ; Kosti, Idit ; Le, Brian L. ; Logue, James ; Hammond, Holly ; Frieman, Matthew ; Stevenson, David K. ; Ingber, Donald E. ; Sirota, Marina ; Novak, Richard
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2023-05, Vol.19 (5), p.e1011050-e1011050
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Large-scale placenta DNA methylation integrated analysis reveals fetal sex-specific differentially methylated CpG sites and regions
Author / Creator:Andrews, Shan V. ; Yang, Irene J. ; Froehlich, Karolin ; Oskotsky, Tomiko ; Sirota, Marina
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2022-06, Vol.12 (1), p.9396-9396, Article 9396
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Similarities and differences in Alzheimer’s dementia comorbidities in racialized populations identified from electronic medical records
Author / Creator:Woldemariam, Sarah R. ; Tang, Alice S. ; Oskotsky, Tomiko T. ; Yaffe, Kristine ; Sirota, Marina
Publisher:London: Nature Publishing Group UK
Journal title:Communications medicine, 2023-04, Vol.3 (1), p.50-50, Article 50
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Sex-Specific Cross Tissue Meta-Analysis Identifies Immune Dysregulation in Women With Alzheimer’s Disease
Author / Creator:Paranjpe, Manish D. ; Belonwu, Stella ; Wang, Jason K. ; Oskotsky, Tomiko ; Gupta, Aarzu ; Taubes, Alice ; Zalocusky, Kelly A. ; Paranjpe, Ishan ; Glicksberg, Benjamin S. ; Huang, Yadong ; Sirota, Marina
Publisher:Lausanne: Frontiers Research Foundation
Journal title:Frontiers in aging neuroscience, 2021-09, Vol.13, p.735611-735611
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Pre-conception clinical risk factors differ between spontaneous and indicated preterm birth in a densely phenotyped EHR cohort
Author / Creator:Costello, Jean M ; Takasuka, Hannah ; Roger, Jacquelyn ; Yin, Ophelia ; Tang, Alice ; Oskotsky, Tomiko ; Sirota, Marina ; Capra, John A
Publisher:England: BioMed Central
Journal title:BMC pregnancy and childbirth, 2025-02, Vol.25 (1), p.149-13
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Leveraging electronic health records and knowledge networks for Alzheimer’s disease prediction and sex-specific biological insights
Author / Creator:Tang, Alice S. ; Rankin, Katherine P. ; Cerono, Gabriel ; Miramontes, Silvia ; Mills, Hunter ; Roger, Jacquelyn ; Zeng, Billy ; Nelson, Charlotte ; Soman, Karthik ; Woldemariam, Sarah ; Li, Yaqiao ; Lee, Albert ; Bove, Riley ; Glymour, Maria ; Aghaeepour, Nima ; Oskotsky, Tomiko T. ; Miller, Zachary ; Allen, Isabel E. ; Sanders, Stephan J. ; Baranzini, Sergio ; Sirota, Marina
Publisher:United States: Nature Publishing Group
Journal title:Nature aging, 2024-03, Vol.4 (3), p.379-395
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Bioinformatics Analysis of Publicly Available Single-Nuclei Transcriptomics Alzheimer’s Disease Datasets Reveals APOE Genotype-Specific Changes Across Cell Types in Two Brain Regions
Author / Creator:Belonwu, Stella A ; Li, Yaqiao ; Bunis, Daniel G ; Rao, Arjun Arkal ; Solsberg, Caroline Warly ; Oskotsky, Tomiko ; Taubes, Alice L ; Grone, Brian ; Zalocusky, Kelly A ; Fragiadakis, Gabriela K ; Huang, Yadong ; Sirota, Marina
Publisher:Lausanne: Frontiers Research Foundation
Journal title:Frontiers in aging neuroscience, 2022-04
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VMAP: Vaginal Microbiome Atlas during Pregnancy
Author / Creator:Parraga-Leo, Antonio ; Oskotsky, Tomiko T ; Oskotsky, Boris ; Wibrand, Camilla ; Roldan, Alennie ; Tang, Alice S ; Ha, Connie W Y ; Wong, Ronald J ; Minot, Samuel S ; Andreoletti, Gaia ; Kosti, Idit ; Theis, Kevin R ; Ng, Sherrianne ; Lee, Yun S ; Diaz-Gimeno, Patricia ; Bennett, Phillip R ; MacIntyre, David A ; Lynch, Susan V ; Romero, Roberto ; Tarca, Adi L ; Stevenson, David K ; Aghaeepour, Nima ; Golob, Jonathan L ; Sirota, Marina
Publisher:United States: Oxford University Press
Journal title:JAMIA open, 2024-10, Vol.7 (3), p.ooae099
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Deep posteromedial cortical rhythm in dissociation
Author / Creator:Vesuna, Sam ; Kauvar, Isaac V. ; Richman, Ethan ; Gore, Felicity ; Oskotsky, Tomiko ; Sava-Segal, Clara ; Luo, Liqun ; Malenka, Robert C. ; Henderson, Jaimie M. ; Nuyujukian, Paul ; Parvizi, Josef ; Deisseroth, Karl
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2020-10, Vol.586 (7827), p.87-94
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Mortality Risk Among Patients With COVID-19 Prescribed Selective Serotonin Reuptake Inhibitor Antidepressants
Author / Creator:Oskotsky, Tomiko ; Marić, Ivana ; Tang, Alice ; Oskotsky, Boris ; Wong, Ronald J. ; Aghaeepour, Nima ; Sirota, Marina ; Stevenson, David K.
Publisher:United States: American Medical Association
Journal title:JAMA network open, 2021-11, Vol.4 (11), p.e2133090-e2133090
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A scalable platform for acquisition of high-fidelity human intracranial EEG with minimal clinical burden
Author / Creator:Yamada, Lisa ; Oskotsky, Tomiko ; Nuyujukian, Paul
Publisher:United States: Public Library of Science
Journal title:PloS one, 2024-06, Vol.19 (6), p.e0305009
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Experimental and real-world evidence supporting the computational repurposing of bumetanide for APOE4-related Alzheimer’s disease
Author / Creator:Taubes, Alice ; Nova, Phil ; Zalocusky, Kelly A. ; Kosti, Idit ; Bicak, Mesude ; Zilberter, Misha Y. ; Hao, Yanxia ; Yoon, Seo Yeon ; Oskotsky, Tomiko ; Pineda, Silvia ; Chen, Bin ; Aery Jones, Emily A. ; Choudhary, Krishna ; Grone, Brian ; Balestra, Maureen E. ; Chaudhry, Fayzan ; Paranjpe, Ishan ; De Freitas, Jessica ; Koutsodendris, Nicole ; Chen, Nuo ; Wang, Celine ; Chang, William ; An, Alice ; Glicksberg, Benjamin S. ; Sirota, Marina ; Huang, Yadong
Publisher:United States: Nature Publishing Group
Journal title:Nature aging, 2021-10, Vol.1 (10), p.932-947
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Nurturing diversity and inclusion in AI in Biomedicine through a virtual summer program for high school students
Author / Creator:Oskotsky, Tomiko ; Bajaj, Ruchika ; Burchard, Jillian ; Cavazos, Taylor ; Chen, Ina ; Connell, William T. ; Eaneff, Stephanie ; Grant, Tianna ; Kanungo, Ishan ; Lindquist, Karla ; Myers-Turnbull, Douglas ; Naing, Zun Zar Chi ; Tang, Alice ; Vora, Bianca ; Wang, Jon ; Karim, Isha ; Swadling, Claire ; Yang, Janice ; Lindstaedt, Bill ; Sirota, Marina
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2022-01, Vol.18 (1), p.e1009719-e1009719
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Author Correction: Experimental and real-world evidence supporting the computational repurposing of bumetanide for APOE4-related Alzheimer’s disease
Author / Creator:Taubes, Alice ; Nova, Phil ; Zalocusky, Kelly A. ; Kosti, Idit ; Bicak, Mesude ; Zilberter, Misha Y. ; Hao, Yanxia ; Yoon, Seo Yeon ; Oskotsky, Tomiko ; Pineda, Silvia ; Chen, Bin ; Aery Jones, Emily A. ; Choudhary, Krishna ; Grone, Brian ; Balestra, Maureen E. ; Chaudhry, Fayzan ; Paranjpe, Ishan ; De Freitas, Jessica ; Koutsodendris, Nicole ; Chen, Nuo ; Wang, Celine ; Chang, William ; An, Alice ; Glicksberg, Benjamin S. ; Sirota, Marina ; Huang, Yadong
Publisher:United States: Nature Publishing Group
Journal title:Nature aging, 2021-12, Vol.1 (12), p.1202-1202
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Robust Harmonization of Microbiome Studies by Phylogenetic Scaffolding with MaLiAmPi
Author / Creator:Minot, Samuel S ; Bailey Garb ; Roldan, Alennie ; Tang, Alice ; Oskotsky, Tomiko ; Rosenthal, Christopher ; Hoffman, Noah G ; Sirota, Marina ; Golob, Jonathan L
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2022-07
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ArticlesFull Text
Large-scale placenta DNA methylation mega-analysis reveals fetal sex-specific differentially methylated CpG sites and regions
Author / Creator:Andrews, Shan V ; Yang, Irene J ; Froehlich, Karolin ; Oskotsky, Tomiko ; Sirota, Marina
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2021-03
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Showing 1 to 20 of 24 results

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Personalizing routine lab tests with machine learning

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Deep phenotyping of Alzheimer’s disease leveraging electronic medical records identifies sex-specific clinical associations

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Sex-Stratified Single-Cell RNA-Seq Analysis Identifies Sex-Specific and Cell Type-Specific Transcriptional Responses in Alzheimer’s Disease Across Two Brain Regions

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Transcriptomics-based drug repositioning pipeline identifies therapeutic candidates for COVID-19

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Target-agnostic drug prediction integrated with medical record analysis uncovers differential associations of statins with increased survival in COVID-19 patients

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Large-scale placenta DNA methylation integrated analysis reveals fetal sex-specific differentially methylated CpG sites and regions

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Similarities and differences in Alzheimer’s dementia comorbidities in racialized populations identified from electronic medical records

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Sex-Specific Cross Tissue Meta-Analysis Identifies Immune Dysregulation in Women With Alzheimer’s Disease

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Pre-conception clinical risk factors differ between spontaneous and indicated preterm birth in a densely phenotyped EHR cohort

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Leveraging electronic health records and knowledge networks for Alzheimer’s disease prediction and sex-specific biological insights

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Bioinformatics Analysis of Publicly Available Single-Nuclei Transcriptomics Alzheimer’s Disease Datasets Reveals APOE Genotype-Specific Changes Across Cell Types in Two Brain Regions

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VMAP: Vaginal Microbiome Atlas during Pregnancy

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Deep posteromedial cortical rhythm in dissociation

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Mortality Risk Among Patients With COVID-19 Prescribed Selective Serotonin Reuptake Inhibitor Antidepressants

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A scalable platform for acquisition of high-fidelity human intracranial EEG with minimal clinical burden

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Experimental and real-world evidence supporting the computational repurposing of bumetanide for APOE4-related Alzheimer’s disease

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Nurturing diversity and inclusion in AI in Biomedicine through a virtual summer program for high school students

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Author Correction: Experimental and real-world evidence supporting the computational repurposing of bumetanide for APOE4-related Alzheimer’s disease

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Robust Harmonization of Microbiome Studies by Phylogenetic Scaffolding with MaLiAmPi

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Large-scale placenta DNA methylation mega-analysis reveals fetal sex-specific differentially methylated CpG sites and regions

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