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ArticlesPeer ReviewedFull Text
Single cell analysis reveals distinct immune landscapes in transplant and primary sarcomas that determine response or resistance to immunotherapy
Author / Creator:Wisdom, Amy J. ; Mowery, Yvonne M. ; Hong, Cierra S. ; Himes, Jonathon E. ; Nabet, Barzin Y. ; Qin, Xiaodi ; Zhang, Dadong ; Chen, Lan ; Fradin, Hélène ; Patel, Rutulkumar ; Bassil, Alex M. ; Muise, Eric S. ; King, Daniel A. ; Xu, Eric S. ; Carpenter, David J. ; Kent, Collin L. ; Smythe, Kimberly S. ; Williams, Nerissa T. ; Luo, Lixia ; Ma, Yan ; Alizadeh, Ash A. ; Owzar, Kouros ; Diehn, Maximilian ; Bradley, Todd ; Kirsch, David G.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2020-12, Vol.11 (1), p.6410-6410, Article 6410
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Lenalidomide after Stem-Cell Transplantation for Multiple Myeloma
Author / Creator:McCarthy, Philip L ; Owzar, Kouros ; Hofmeister, Craig C ; Hurd, David D ; Hassoun, Hani ; Richardson, Paul G ; Giralt, Sergio ; Stadtmauer, Edward A ; Weisdorf, Daniel J ; Vij, Ravi ; Moreb, Jan S ; Callander, Natalie Scott ; Van Besien, Koen ; Gentile, Teresa ; Isola, Luis ; Maziarz, Richard T ; Gabriel, Don A ; Bashey, Asad ; Landau, Heather ; Martin, Thomas ; Qazilbash, Muzaffar H ; Levitan, Denise ; McClune, Brian ; Schlossman, Robert ; Hars, Vera ; Postiglione, John ; Jiang, Chen ; Bennett, Elizabeth ; Barry, Susan ; Bressler, Linda ; Kelly, Michael ; Seiler, Michele ; Rosenbaum, Cara ; Hari, Parameswaran ; Pasquini, Marcelo C ; Horowitz, Mary M ; Shea, Thomas C ; Devine, Steven M ; Anderson, Kenneth C ; Linker, Charles
Publisher:United States: Massachusetts Medical Society
Journal title:The New England journal of medicine, 2012-05, Vol.366 (19), p.1770-1781
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Clustering Deviation Index (CDI): a robust and accurate internal measure for evaluating scRNA-seq data clustering
Author / Creator:Fang, Jiyuan ; Chan, Cliburn ; Owzar, Kouros ; Wang, Liuyang ; Qin, Diyuan ; Li, Qi-Jing ; Xie, Jichun
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2022-12, Vol.23 (1), p.269-269, Article 269
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TEMPTED: time-informed dimensionality reduction for longitudinal microbiome studies
Author / Creator:Shi, Pixu ; Martino, Cameron ; Han, Rungang ; Janssen, Stefan ; Buck, Gregory ; Serrano, Myrna ; Owzar, Kouros ; Knight, Rob ; Shenhav, Liat ; Zhang, Anru R.
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2024-12, Vol.25 (1), p.317-317, Article 317
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Adjuvant imatinib mesylate after resection of localised, primary gastrointestinal stromal tumour: a randomised, double-blind, placebo-controlled trial
Author / Creator:DeMatteo, Ronald P, Prof ; Ballman, Karla V, PhD ; Antonescu, Cristina R, MD ; Maki, Robert G, MD ; Pisters, Peter WT, Prof ; Demetri, George D, MD ; Blackstein, Martin E, MD ; Blanke, Charles D, Prof ; von Mehren, Margaret, MD ; Brennan, Murray F, Prof ; Patel, Shreyaskumar, Prof ; McCarter, Martin D, MD ; Polikoff, Jonathan A, MD ; Tan, Benjamin R, MD ; Owzar, Kouros, PhD
Publisher:Kidlington: Elsevier Ltd
Journal title:The Lancet (British edition), 2009-03, Vol.373 (9669), p.1097-1104
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Adaptation and selection shape clonal evolution of tumors during residual disease and recurrence
Author / Creator:Walens, Andrea ; Lin, Jiaxing ; Damrauer, Jeffrey S. ; McKinney, Brock ; Lupo, Ryan ; Newcomb, Rachel ; Fox, Douglas B. ; Mabe, Nathaniel W. ; Gresham, Jeremy ; Sheng, Zhecheng ; Sibley, Alexander B. ; De Buysscher, Tristan ; Kelkar, Hemant ; Mieczkowski, Piotr A. ; Owzar, Kouros ; Alvarez, James V.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2020-10, Vol.11 (1), p.5017-5017, Article 5017
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Genomic alterations are associated with response to aromatase inhibitor therapy for ER-positive postmenopausal ductal carcinoma in situ: (CALGB 40903, Alliance)
Author / Creator:Marks, Jeffrey R. ; Zhang, Dadong ; Hardman, Timothy ; Chen, Yunn-yi ; Hall, Allison ; Simpson, Lunden ; Hieken, Tina ; Bedrosian, Isabelle ; Price, Elissa ; Sheng, Jeff ; Dai, Yanwan ; Lee, Marissa ; Sibley, Alexander B. ; Owzar, Kouros ; Hwang, E. Shelley
Publisher:England: BioMed Central Ltd
Journal title:Breast cancer research : BCR, 2025-02, Vol.27 (1), p.26-11, Article 26
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Androgen receptor monomers and dimers regulate opposing biological processes in prostate cancer cells
Author / Creator:Safi, Rachid ; Wardell, Suzanne E. ; Watkinson, Paige ; Qin, Xiaodi ; Lee, Marissa ; Park, Sunghee ; Krebs, Taylor ; Dolan, Emma L. ; Blattler, Adam ; Tsuji, Toshiya ; Nayak, Surendra ; Khater, Marwa ; Fontanillo, Celia ; Newlin, Madeline A. ; Kirkland, Megan L. ; Xie, Yingtian ; Long, Henry ; Fink, Emma C. ; Fanning, Sean W. ; Runyon, Scott ; Brown, Myles ; Xu, Shuichan ; Owzar, Kouros ; Norris, John D. ; McDonnell, Donald P.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2024-09, Vol.15 (1), p.7675-19, Article 7675
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Bevacizumab-induced hypertension and proteinuria: a genome-wide study of more than 1000 patients
Author / Creator:Quintanilha, Julia C. F. ; Wang, Jin ; Sibley, Alexander B. ; Jiang, Chen ; Etheridge, Amy S. ; Shen, Fei ; Jiang, Guanglong ; Mulkey, Flora ; Patel, Jai N. ; Hertz, Daniel L. ; Dees, Elizabeth Claire ; McLeod, Howard L. ; Bertagnolli, Monica ; Rugo, Hope ; Kindler, Hedy L. ; Kelly, William Kevin ; Ratain, Mark J. ; Kroetz, Deanna L. ; Owzar, Kouros ; Schneider, Bryan P. ; Lin, Danyu ; Innocenti, Federico
Publisher:London: Nature Publishing Group UK
Journal title:British journal of cancer, 2022-02, Vol.126 (2), p.265-274
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fastJT: An R package for robust and efficient feature selection for machine learning and genome-wide association studies
Author / Creator:Lin, Jiaxing ; Sibley, Alexander ; Shterev, Ivo ; Nixon, Andrew ; Innocenti, Federico ; Chan, Cliburn ; Owzar, Kouros
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2019-06, Vol.20 (1), p.333-333, Article 333
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Analysis of ductal carcinoma in situ by self-reported race reveals molecular differences related to outcome
Author / Creator:Strand, Siri H. ; Houlahan, Kathleen E. ; Branch, Vernal ; Lynch, Thomas ; Rivero-Guitiérrez, Belén ; Harmon, Bryan ; Couch, Fergus ; Gallagher, Kristalyn ; Kilgore, Mark ; Wei, Shi ; DeMichele, Angela ; King, Tari ; McAuliffe, Priscilla ; Curtis, Christina ; Owzar, Kouros ; Marks, Jeffrey R. ; Colditz, Graham A. ; Hwang, E. Shelley ; West, Robert B.
Publisher:England: BioMed Central Ltd
Journal title:Breast cancer research : BCR, 2024-09, Vol.26 (1), p.127-15, Article 127
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Common variation in a long non-coding RNA gene modulates variation of circulating TGF-β2 levels in metastatic colorectal cancer patients (Alliance)
Author / Creator:Quintanilha, Julia C.F. ; Sibley, Alexander B. ; Liu, Yingmiao ; Niedzwiecki, Donna ; Halabi, Susan ; Rogers, Layne ; O’Neil, Bert ; Kindler, Hedy ; Kelly, William ; Venook, Alan ; McLeod, Howard L. ; Ratain, Mark J. ; Nixon, Andrew B. ; Innocenti, Federico ; Owzar, Kouros
Publisher:England: BioMed Central
Journal title:BMC genomics, 2024-05, Vol.25 (1), p.473-10, Article 473
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Late effects of total body irradiation on hematopoietic recovery and immune function in rhesus macaques
Author / Creator:Hale, Laura P. ; Rajam, Gowrisankar ; Carlone, George M. ; Jiang, Chen ; Owzar, Kouros ; Dugan, Greg ; Caudell, David ; Chao, Nelson ; Cline, J. Mark ; Register, Thomas C. ; Sempowski, Gregory D.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2019-02, Vol.14 (2), p.e0210663
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DNA-Damage-Induced Alternative Splicing of p53
Author / Creator:Chen, Jing ; Zhang, Dadong ; Qin, Xiaodi ; Owzar, Kouros ; McCann, Jennifer J. ; Kastan, Michael B.
Publisher:Switzerland: MDPI AG
Journal title:Cancers, 2021-01, Vol.13 (2), p.251
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Mapping eQTL by leveraging multiple tissues and DNA methylation
Author / Creator:Acharya, Chaitanya R. ; Owzar, Kouros ; Allen, Andrew S.
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2017-10, Vol.18 (1), p.455-455, Article 455
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Prophylactic Thyroidectomy in Multiple Endocrine Neoplasia Type 2A
Author / Creator:Skinner, Michael A ; Moley, Jeffrey A ; Dilley, William G ; Owzar, Kouros ; DeBenedetti, Mary K ; Wells, Samuel A
Publisher:Boston, MA: Massachusetts Medical Society
Journal title:The New England journal of medicine, 2005-09, Vol.353 (11), p.1105-1113
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Pharmacogenetic and clinical risk factors for bevacizumab-related gastrointestinal hemorrhage in prostate cancer patients treated on CALGB 90401 (Alliance)
Author / Creator:Patel, Jai N. ; Jiang, Chen ; Owzar, Kouros ; Hertz, Daniel L. ; Wang, Janey ; Mulkey, Flora A. ; Kelly, William K. ; Halabi, Susan ; Furukawa, Yoichi ; Lassiter, Cameron ; Dorsey, Susan G. ; Friedman, Paula N. ; Small, Eric J. ; Carducci, Michael A. ; Kelley, Michael J. ; Nakamura, Yusuke ; Kubo, Michiaki ; Ratain, Mark J. ; Morris, Michael J. ; McLeod, Howard L.
Publisher:London: Nature Publishing Group UK
Journal title:The pharmacogenomics journal, 2024-04, Vol.24 (2), p.6, Article 6
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Genomic and immune profiling of breast cancer brain metastases
Author / Creator:Van Swearingen, Amanda E. D. ; Lee, Marissa R. ; Rogers, Layne W. ; Sibley, Alexander B. ; Shi, Pixu ; Qin, Xiaodi ; Goodin, Michael ; Seale, Katelyn ; Owzar, Kouros ; Anders, Carey K.
Publisher:England: BioMed Central Ltd
Journal title:Acta neuropathologica communications, 2025-05, Vol.13 (1), p.99-22, Article 99
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Efficient estimation of grouped survival models
Author / Creator:Li, Zhiguo ; Lin, Jiaxing ; Sibley, Alexander B. ; Truong, Tracy ; Chua, Katherina C. ; Jiang, Yu ; McCarthy, Janice ; Kroetz, Deanna L. ; Allen, Andrew ; Owzar, Kouros
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2019-05, Vol.20 (1), p.269-269, Article 269
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Comparative analysis of RNA enrichment methods for preparation of Cryptococcus neoformans RNA sequencing libraries
Author / Creator:Telzrow, Calla L ; Zwack, Paul J ; Esher Righi, Shannon ; Dietrich, Fred S ; Chan, Cliburn ; Owzar, Kouros ; Alspaugh, J Andrew ; Granek, Joshua A
Publisher:England: Oxford University Press
Journal title:G3 : genes - genomes - genetics, 2021-10, Vol.11 (11)
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Single cell analysis reveals distinct immune landscapes in transplant and primary sarcomas that determine response or resistance to immunotherapy

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Lenalidomide after Stem-Cell Transplantation for Multiple Myeloma

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Clustering Deviation Index (CDI): a robust and accurate internal measure for evaluating scRNA-seq data clustering

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TEMPTED: time-informed dimensionality reduction for longitudinal microbiome studies

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Adjuvant imatinib mesylate after resection of localised, primary gastrointestinal stromal tumour: a randomised, double-blind, placebo-controlled trial

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Adaptation and selection shape clonal evolution of tumors during residual disease and recurrence

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Genomic alterations are associated with response to aromatase inhibitor therapy for ER-positive postmenopausal ductal carcinoma in situ: (CALGB 40903, Alliance)

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Androgen receptor monomers and dimers regulate opposing biological processes in prostate cancer cells

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Bevacizumab-induced hypertension and proteinuria: a genome-wide study of more than 1000 patients

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fastJT: An R package for robust and efficient feature selection for machine learning and genome-wide association studies

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Analysis of ductal carcinoma in situ by self-reported race reveals molecular differences related to outcome

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Common variation in a long non-coding RNA gene modulates variation of circulating TGF-β2 levels in metastatic colorectal cancer patients (Alliance)

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Late effects of total body irradiation on hematopoietic recovery and immune function in rhesus macaques

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DNA-Damage-Induced Alternative Splicing of p53

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Mapping eQTL by leveraging multiple tissues and DNA methylation

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Prophylactic Thyroidectomy in Multiple Endocrine Neoplasia Type 2A

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Pharmacogenetic and clinical risk factors for bevacizumab-related gastrointestinal hemorrhage in prostate cancer patients treated on CALGB 90401 (Alliance)

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Genomic and immune profiling of breast cancer brain metastases

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Efficient estimation of grouped survival models

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Comparative analysis of RNA enrichment methods for preparation of Cryptococcus neoformans RNA sequencing libraries

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