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103 results for Paša-Tolić,+Ljiljana

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Activation of the plant mevalonate pathway by extracellular ATP
Author / Creator:Cho, Sung-Hwan ; Tóth, Katalin ; Kim, Daewon ; Vo, Phuc H. ; Lin, Chung-Ho ; Handakumbura, Pubudu P. ; Ubach, Albert Rivas ; Evans, Sterling ; Paša-Tolić, Ljiljana ; Stacey, Gary
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2022-01, Vol.13 (1), p.450-450, Article 450
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Antibody-free, targeted mass-spectrometric approach for quantification of proteins at low picogram per milliliter levels in human plasma/serum
Author / Creator:Shi, Tujin ; Fillmore, Thomas L ; Sun, Xuefei ; Zhao, Rui ; Schepmoes, Athena A ; Hossain, Mahmud ; Xie, Fang ; Wu, Si ; Kim, Jong-Seo ; Jones, Nathan ; Moore, Ronald J ; Paša-Tolić, Ljiljana ; Kagan, Jacob ; Rodland, Karin D ; Liu, Tao ; Tang, Keqi ; Camp, David G ; Smith, Richard D ; Qian, Wei-Jun
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2012-09, Vol.109 (38), p.15395-15400
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Community proteogenomics reveals the systemic impact of phosphorus availability on microbial functions in tropical soil
Author / Creator:Yao, Qiuming ; Li, Zhou ; Song, Yang ; Wright, S. Joseph ; Guo, Xuan ; Tringe, Susannah G. ; Tfaily, Malak M. ; Paša-Tolić, Ljiljana ; Hazen, Terry C. ; Turner, Benjamin L. ; Mayes, Melanie A. ; Pan, Chongle
Publisher:London: Nature Publishing Group UK
Journal title:Nature ecology & evolution, 2018-03, Vol.2 (3), p.499-509
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Proteomic Profiling of Exosomes Leads to the Identification of Novel Biomarkers for Prostate Cancer
Author / Creator:Duijvesz, Diederick ; Burnum-Johnson, Kristin E. ; Gritsenko, Marina A. ; Hoogland, A. Marije ; Vredenbregt-van den Berg, Mirella S. ; Willemsen, Rob ; Luider, Theo ; Paša-Tolić, Ljiljana ; Jenster, Guido
Publisher:United States: Public Library of Science
Journal title:PloS one, 2013-12, Vol.8 (12), p.e82589-e82589
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Parallel measurement of transcriptomes and proteomes from same single cells using nanodroplet splitting
Author / Creator:Fulcher, James M. ; Markillie, Lye Meng ; Mitchell, Hugh D. ; Williams, Sarah M. ; Engbrecht, Kristin M. ; Degnan, David J. ; Bramer, Lisa M. ; Moore, Ronald J. ; Chrisler, William B. ; Cantlon-Bruce, Joshua ; Bagnoli, Johannes W. ; Qian, Wei-Jun ; Seth, Anjali ; Paša-Tolić, Ljiljana ; Zhu, Ying
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2024-12, Vol.15 (1), p.10614-13, Article 10614
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Top-down proteomics reveals a unique protein S-thiolation switch in Salmonella Typhimurium in response to infection-like conditions
Author / Creator:Ansong, Charles ; Wu, Si ; Da Meng ; Liu, Xiaowen ; Brewer, Heather M. ; Kaiser, Brooke L. Deatherage ; Nakayasu, Ernesto S. ; Cort, John R. ; Pevzner, Pavel ; Smith, Richard D. ; Heffron, Fred ; Adkins, Joshua N. ; Paša-Tolić, Ljiljana
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2013-06, Vol.110 (25), p.10153-10158
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Enhanced top-down characterization of histone post-translational modifications
Author / Creator:Tian, Zhixin ; Tolić, Nikola ; Zhao, Rui ; Moore, Ronald J ; Hengel, Shawna M ; Robinson, Errol W ; Stenoien, David L ; Wu, Si ; Smith, Richard D ; Paša-Tolić, Ljiljana
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology (Online Edition), 2012-10, Vol.13 (10), p.R86-R86, Article R86
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Comparative Analysis of Secretome Profiles of Manganese(II)-Oxidizing Ascomycete Fungi
Author / Creator:Zeiner, Carolyn A. ; Purvine, Samuel O. ; Zink, Erika M. ; Paša-Tolić, Ljiljana ; Chaput, Dominique L. ; Haridas, Sajeet ; Wu, Si ; LaButti, Kurt ; Grigoriev, Igor V. ; Henrissat, Bernard ; Santelli, Cara M. ; Hansel, Colleen M.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2016-07, Vol.11 (7), p.e0157844-e0157844
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Proteogenomic Analysis of a Thermophilic Bacterial Consortium Adapted to Deconstruct Switchgrass
Author / Creator:D'haeseleer, Patrik ; Gladden, John M. ; Allgaier, Martin ; Chain, Patrik S. G. ; Tringe, Susannah G. ; Malfatti, Stephanie A. ; Aldrich, Joshua T. ; Nicora, Carrie D. ; Robinson, Errol W. ; Paša-Tolić, Ljiljana ; Hugenholtz, Philip ; Simmons, Blake A. ; Singer, Steven W.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2013-07, Vol.8 (7), p.e68465-e68465
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Close and distant: Contrasting the metabolism of two closely related subspecies of Scots pine under the effects of folivory and summer drought
Author / Creator:Rivas‐Ubach, Albert ; Sardans, Jordi ; Hódar, José Antonio ; Garcia‐Porta, Joan ; Guenther, Alex ; Paša‐Tolić, Ljiljana ; Oravec, Michal ; Urban, Otmar ; Peñuelas, Josep
Publisher:England: John Wiley & Sons, Inc
Journal title:Ecology and evolution, 2017-11, Vol.7 (21), p.8976-8988
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Life and death in the soil microbiome: how ecological processes influence biogeochemistry
Author / Creator:Sokol, Noah W. ; Slessarev, Eric ; Marschmann, Gianna L. ; Nicolas, Alexa ; Blazewicz, Steven J. ; Brodie, Eoin L. ; Firestone, Mary K. ; Foley, Megan M. ; Hestrin, Rachel ; Hungate, Bruce A. ; Koch, Benjamin J. ; Stone, Bram W. ; Sullivan, Matthew B. ; Zablocki, Olivier ; Pett-Ridge, Jennifer
Publisher:London: Nature Publishing Group UK
Journal title:Nature reviews. Microbiology, 2022-07, Vol.20 (7), p.415-430
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Secondary Ion Mass Spectrometry Imaging of Dictyostelium discoideum Aggregation Streams
Author / Creator:DeBord, John Daniel ; Smith, Donald F. ; Anderton, Christopher R. ; Heeren, Ron M. A. ; Paša-Tolić, Ljiljana ; Gomer, Richard H. ; Fernandez-Lima, Francisco A.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2014-06, Vol.9 (6), p.e99319-e99319
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Development of an ecophysiological model for Diplosphaera colotermitum TAV2, a termite hindgut Verrucomicrobium
Author / Creator:Isanapong, Jantiya ; Sealy Hambright, W ; Willis, Austin G ; Boonmee, Atcha ; Callister, Stephen J ; Burnum, Kristin E ; Paša-Tolić, Ljiljana ; Nicora, Carrie D ; Wertz, John T ; Schmidt, Thomas M ; Rodrigues, Jorge LM
Publisher:London: Nature Publishing Group UK
Journal title:The ISME Journal, 2013-09, Vol.7 (9), p.1803-1813
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Best practices and benchmarks for intact protein analysis for top-down mass spectrometry
Author / Creator:Donnelly, Daniel P. ; Rawlins, Catherine M. ; DeHart, Caroline J. ; Fornelli, Luca ; Schachner, Luis F. ; Lin, Ziqing ; Lippens, Jennifer L. ; Aluri, Krishna C. ; Sarin, Richa ; Chen, Bifan ; Lantz, Carter ; Jung, Wonhyeuk ; Johnson, Kendall R. ; Koller, Antonius ; Wolff, Jeremy J. ; Campuzano, Iain D. G. ; Auclair, Jared R. ; Ivanov, Alexander R. ; Whitelegge, Julian P. ; Paša-Tolić, Ljiljana ; Chamot-Rooke, Julia ; Danis, Paul O. ; Smith, Lloyd M. ; Tsybin, Yury O. ; Loo, Joseph A. ; Ge, Ying ; Kelleher, Neil L. ; Agar, Jeffrey N.
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2019-07, Vol.16 (7), p.587-594
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Metaproteomics reveals differential modes of metabolic coupling among ubiquitous oxygen minimum zone microbes
Author / Creator:Hawley, Alyse K. ; Brewer, Heather M. ; Norbeck, Angela D. ; Paša-Tolić, Ljiljana ; Hallam, Steven J.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2014-08, Vol.111 (31), p.11395-11400
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Informed-Proteomics: open-source software package for top-down proteomics
Author / Creator:Park, Jungkap ; Piehowski, Paul D ; Wilkins, Christopher ; Zhou, Mowei ; Mendoza, Joshua ; Fujimoto, Grant M ; Gibbons, Bryson C ; Shaw, Jared B ; Shen, Yufeng ; Shukla, Anil K ; Moore, Ronald J ; Liu, Tao ; Petyuk, Vladislav A ; Tolić, Nikola ; Paša-Tolić, Ljiljana ; Smith, Richard D ; Payne, Samuel H ; Kim, Sangtae
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2017-09, Vol.14 (9), p.909-914
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A five-level classification system for proteoform identifications
Author / Creator:Smith, Lloyd M. ; Thomas, Paul M. ; Shortreed, Michael R. ; Schaffer, Leah V. ; Fellers, Ryan T. ; LeDuc, Richard D. ; Tucholski, Trisha ; Ge, Ying ; Agar, Jeffrey N. ; Anderson, Lissa C. ; Chamot-Rooke, Julia ; Gault, Joseph ; Loo, Joseph A. ; Paša-Tolić, Ljiljana ; Robinson, Carol V. ; Schlüter, Hartmut ; Tsybin, Yury O. ; Vilaseca, Marta ; Vizcaíno, Juan Antonio ; Danis, Paul O. ; Kelleher, Neil L.
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2019-10, Vol.16 (10), p.939-940
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ArticlesPeer ReviewedFull Text
Proteome analysis using selective incorporation of isotopically labeled amino acids
Author / Creator:Veenstra, Timothy D ; Martinović, Suzana ; Anderson, Gordon A ; Paša-Tolić, Ljiljana ; Smith, Richard D
Publisher:New York, NY: Elsevier Inc
Journal title:Journal of the American Society for Mass Spectrometry, 2000, Vol.11 (1), p.78-82
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ESI-FTICR mass spectrometry employing data-dependent external ion selection and accumulation
Author / Creator:Harkewicz, Richard ; Belov, Mikhail E ; Anderson, Gordon A ; Paša-Tolić, Ljiljana ; Masselon, Christophe D ; Prior, David C ; Udseth, Harold R ; Smith, Richard D
Publisher:New York, NY: Elsevier Inc
Journal title:Journal of the American Society for Mass Spectrometry, 2002-02, Vol.13 (2), p.144-154
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Showing 1 to 20 of 103 results

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Activation of the plant mevalonate pathway by extracellular ATP

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Antibody-free, targeted mass-spectrometric approach for quantification of proteins at low picogram per milliliter levels in human plasma/serum

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Community proteogenomics reveals the systemic impact of phosphorus availability on microbial functions in tropical soil

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Proteomic Profiling of Exosomes Leads to the Identification of Novel Biomarkers for Prostate Cancer

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Parallel measurement of transcriptomes and proteomes from same single cells using nanodroplet splitting

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Top-down proteomics reveals a unique protein S-thiolation switch in Salmonella Typhimurium in response to infection-like conditions

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Enhanced top-down characterization of histone post-translational modifications

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Comparative Analysis of Secretome Profiles of Manganese(II)-Oxidizing Ascomycete Fungi

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Proteogenomic Analysis of a Thermophilic Bacterial Consortium Adapted to Deconstruct Switchgrass

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Close and distant: Contrasting the metabolism of two closely related subspecies of Scots pine under the effects of folivory and summer drought

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Life and death in the soil microbiome: how ecological processes influence biogeochemistry

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Secondary Ion Mass Spectrometry Imaging of Dictyostelium discoideum Aggregation Streams

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Development of an ecophysiological model for Diplosphaera colotermitum TAV2, a termite hindgut Verrucomicrobium

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Best practices and benchmarks for intact protein analysis for top-down mass spectrometry

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Metaproteomics reveals differential modes of metabolic coupling among ubiquitous oxygen minimum zone microbes

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Informed-Proteomics: open-source software package for top-down proteomics

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A five-level classification system for proteoform identifications

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Proteome analysis using selective incorporation of isotopically labeled amino acids

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ESI-FTICR mass spectrometry employing data-dependent external ion selection and accumulation

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