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ArticlesPeer ReviewedFull Text
NetBID2 provides comprehensive hidden driver analysis
Author / Creator:Dong, Xinran ; Ding, Liang ; Thrasher, Andrew ; Wang, Xinge ; Liu, Jingjing ; Pan, Qingfei ; Rash, Jordan ; Dhungana, Yogesh ; Yang, Xu ; Risch, Isabel ; Li, Yuxin ; Yan, Lei ; Rusch, Michael ; McLeod, Clay ; Yan, Koon-Kiu ; Peng, Junmin ; Chi, Hongbo ; Zhang, Jinghui ; Yu, Jiyang
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2023-05, Vol.14 (1), p.2581-10, Article 2581
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scMINER: a mutual information-based framework for clustering and hidden driver inference from single-cell transcriptomics data
Author / Creator:Pan, Qingfei ; Ding, Liang ; Hladyshau, Siarhei ; Yao, Xiangyu ; Zhou, Jiayu ; Yan, Lei ; Dhungana, Yogesh ; Shi, Hao ; Qian, Chenxi ; Dong, Xinran ; Burdyshaw, Chad ; Veloso, Joao Pedro ; Khatamian, Alireza ; Xie, Zhen ; Risch, Isabel ; Yang, Xu ; Yang, Jiyuan ; Huang, Xin ; Fang, Jason ; Jain, Anuj ; Jain, Arihant ; Rusch, Michael ; Brewer, Michael ; Peng, Junmin ; Yan, Koon-Kiu ; Chi, Hongbo ; Yu, Jiyang
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2025-05, Vol.16 (1), p.4305-20, Article 4305
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ArticlesPeer ReviewedFull Text
Cross-talk between GLI transcription factors and FOXC1 promotes T-cell acute lymphoblastic leukemia dissemination
Author / Creator:Tosello, Valeria ; Bongiovanni, Deborah ; Liu, Jingjing ; Pan, Qingfei ; Yan, Koon-kiu ; Saccomani, Valentina ; Van Trimpont, Maaike ; Pizzi, Marco ; Mazzoni, Martina ; Dei Tos, Angelo Paolo ; Amadori, Alberto ; Zanovello, Paola ; Van Vlierberghe, Pieter ; Yu, Jiyang ; Piovan, Erich
Publisher:London: Nature Publishing Group UK
Journal title:Leukemia, 2021-04, Vol.35 (4), p.984-1000
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ArticlesPeer ReviewedFull Text
Genomic variants in mouse model induced by azoxymethane and dextran sodium sulfate improperly mimic human colorectal cancer
Author / Creator:Pan, Qingfei ; Lou, Xiaomin ; Zhang, Ju ; Zhu, Yinghui ; Li, Fuqiang ; Shan, Qiang ; Chen, Xianwei ; Xie, Yingying ; Su, Siyuan ; Wei, Hanfu ; Lin, Liang ; Wu, Lin ; Liu, Siqi
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2017-02, Vol.7 (1), p.25-12, Article 25
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ArticlesPeer ReviewedFull Text
Maternal Benzophenone Exposure Impairs Hippocampus Development and Cognitive Function in Mouse Offspring
Author / Creator:Cui, Fengzhen ; Pan, Qingfei ; Wang, Siyi ; Zhao, Faming ; Wang, Runxin ; Zhang, Tingting ; Song, Yaying ; He, Jun ; Zhang, Haolin ; Weng, Qiang ; Jin, Yang ; Xia, Wei ; Li, Yuanyuan ; Yang, Guo‐Yuan ; De Vos, Winnok H. ; Timmermans, Jean‐Pierre ; Xu, Shunqing ; Tang, Yaohui ; Sheng, Xia
Publisher:Germany: John Wiley & Sons, Inc
Journal title:Advanced science, 2021-12, Vol.8 (23), p.e2102686-n/a
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ArticlesPeer ReviewedFull Text
Ythdf2-mediated m6A mRNA clearance modulates neural development in mice
Author / Creator:Li, Miaomiao ; Zhao, Xu ; Wang, Wei ; Shi, Hailing ; Pan, Qingfei ; Lu, Zhike ; Perez, Sonia Peña ; Suganthan, Rajikala ; He, Chuan ; Bjørås, Magnar ; Klungland, Arne
Publisher:London: BioMed Central Ltd
Journal title:Genome Biology, 2018-05, Vol.19 (1), p.69-69, Article 69
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ArticlesPeer ReviewedFull Text
Ribonucleotide reductase subunit switching in hepatoblastoma drug response and relapse
Author / Creator:Brown, Anthony ; Pan, Qingfei ; Fan, Li ; Indersie, Emilie ; Tian, Cheng ; Timchenko, Nikolai ; Li, Liyuan ; Hansen, Baranda S. ; Tan, Haiyan ; Lu, Meifen ; Peng, Junmin ; Pruett-Miller, Shondra M. ; Yu, Jiyang ; Cairo, Stefano ; Zhu, Liqin
Publisher:London: Nature Publishing Group UK
Journal title:Communications biology, 2023-03, Vol.6 (1), p.249-249, Article 249
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ArticlesPeer ReviewedFull Text
Erratum: Genomic variants in mouse model induced by azoxymethane and dextran sodium sulfate improperly mimic human colorectal cancer
Author / Creator:Pan, Qingfei ; Lou, Xiaomin ; Zhang, Ju ; Zhu, Yinghui ; Li, Fuqiang ; Shan, Qiang ; Chen, Xianwei ; Xie, Yingying ; Su, Siyuan ; Wei, Hanfu ; Lin, Liang ; Wu, Lin ; Liu, Siqi
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2017-06, Vol.7 (1), p.2784-1, Article 2784
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ArticlesPeer ReviewedFull Text
Stability of the Stochastic Reaction-Diffusion Neural Network with Time-Varying Delays and p-Laplacian
Author / Creator:Qingfei, Pan ; Jingchang, Huang ; Zifang, Zhang
Publisher:Cairo, Egypt: Hindawi Limiteds
Journal title:Journal of Applied Mathematics, 2012-01, Vol.2012 (2012), p.1263-1272-289
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ArticlesPeer ReviewedFull Text
Spatiotemporal regulation of cholangiocarcinoma growth and dissemination by peritumoral myofibroblasts in a Vcam1-dependent manner
Author / Creator:Tian, Cheng ; Li, Liyuan ; Pan, Qingfei ; Xu, Beisi ; Li, Yizhen ; Fan, Li ; Brown, Anthony ; Morrison, Michelle ; Dey, Kaushik ; Yang, Jun J. ; Yu, Jiyang ; Glazer, Evan S. ; Zhu, Liqin
Publisher:London: Nature Publishing Group UK
Journal title:Oncogene, 2023-04, Vol.42 (15), p.1196-1208
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ArticlesPeer ReviewedFull Text
Maternal Benzophenone Exposure Impairs Hippocampus Development and Cognitive Function in Mouse Offspring (Adv. Sci. 23/2021)
Author / Creator:Cui, Fengzhen ; Pan, Qingfei ; Wang, Siyi ; Zhao, Faming ; Wang, Runxin ; Zhang, Tingting ; Song, Yaying ; He, Jun ; Zhang, Haolin ; Weng, Qiang ; Jin, Yang ; Xia, Wei ; Li, Yuanyuan ; Yang, Guo‐Yuan ; De Vos, Winnok H. ; Timmermans, Jean‐Pierre ; Xu, Shunqing ; Tang, Yaohui ; Sheng, Xia
Publisher:Weinheim: John Wiley & Sons, Inc
Journal title:Advanced science, 2021-12, Vol.8 (23), p.n/a
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ArticlesPeer ReviewedFull Text
Ythdf2-mediated m 6 A mRNA clearance modulates neural development in mice
Author / Creator:Li, Miaomiao ; Zhao, Xu ; Wang, Wei ; Shi, Hailing ; Pan, Qingfei ; Lu, Zhike ; Perez, Sonia Peña ; Suganthan, Rajikala ; He, Chuan ; Bjørås, Magnar ; Klungland, Arne
Publisher:England
Journal title:Genome biology, 2018-05, Vol.19 (1), p.69
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ArticlesFull Text
scMINER: a mutual information-based framework for identifying hidden drivers from single-cell omics data
Author / Creator:Ding, Liang ; Shi, Hao ; Qian, Chenxi ; Burdyshaw, Chad ; Joan Pedro Veloso ; Khatamian, Alireza ; Pan, Qingfei ; Dhungana, Yogesh ; Xie, Zhen ; Risch, Isabel ; Xu, Yang ; Huang, Xin ; Yan, Lei ; Rusch, Michael ; Brewer, Michael ; Koon-Kiu Yan ; Chi, Hongbo ; Yu, Jiyang
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2023-01
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ArticlesFull Text
About the bound of the C exponential length
Author / Creator:Pan, Qingfei ; Wang, Kun
Publisher:Ithaca: Cornell University Library, arXiv.org
Journal title:arXiv.org, 2014-02
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ArticlesFull Text
miR-424(322) is a molecular switch controlling pro-inflammatory vs anti-inflammatory skin DC subset differentiation by modulating TGF-β signaling
Author / Creator:Zyulina, Victoria ; Koon-Kiu Yan ; Ju, Bensheng ; Passegger, Christina ; Tam-Amersdorfer, Carmen ; Pan, Qingfei ; Sconocchia, Tommaso ; Pollack, Christian ; Shaner, Bridget ; Zebisch, Armin ; Easton, John ; Yu, Jiyang ; Silva, Jose M ; Strobl, Herbert
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2020-09
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ArticlesFull Text
Single-cell analysis identifies TCF4 and ID3 as a molecular switch of mammary epithelial stem cell differentiation
Author / Creator:Koon-Kiu Yan ; Nekritz, Erin ; Ju, Bensheng ; Dong, Xinran ; Werner, Rachel ; Alsina-Beauchamp, Dayanira ; Rosencrance, Celeste ; Mukhopadhyay, Partha ; Pan, Qingfei ; Gorbatenko, Andrej ; Ding, Liang ; Wang, Yanyan ; Qian, Chenxi ; Shi, Hao ; Shaner, Bridget ; Sivaraman Natarajan ; Chi, Hongbo ; Easton, John ; Silva, Jose ; Yu, Jiyang
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2020-08
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NetBID2 provides comprehensive hidden driver analysis

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scMINER: a mutual information-based framework for clustering and hidden driver inference from single-cell transcriptomics data

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Cross-talk between GLI transcription factors and FOXC1 promotes T-cell acute lymphoblastic leukemia dissemination

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Genomic variants in mouse model induced by azoxymethane and dextran sodium sulfate improperly mimic human colorectal cancer

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Maternal Benzophenone Exposure Impairs Hippocampus Development and Cognitive Function in Mouse Offspring

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Ythdf2-mediated m6A mRNA clearance modulates neural development in mice

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Ribonucleotide reductase subunit switching in hepatoblastoma drug response and relapse

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Erratum: Genomic variants in mouse model induced by azoxymethane and dextran sodium sulfate improperly mimic human colorectal cancer

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Stability of the Stochastic Reaction-Diffusion Neural Network with Time-Varying Delays and p-Laplacian

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Spatiotemporal regulation of cholangiocarcinoma growth and dissemination by peritumoral myofibroblasts in a Vcam1-dependent manner

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Maternal Benzophenone Exposure Impairs Hippocampus Development and Cognitive Function in Mouse Offspring (Adv. Sci. 23/2021)

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Ythdf2-mediated m 6 A mRNA clearance modulates neural development in mice

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scMINER: a mutual information-based framework for identifying hidden drivers from single-cell omics data

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About the bound of the C exponential length

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miR-424(322) is a molecular switch controlling pro-inflammatory vs anti-inflammatory skin DC subset differentiation by modulating TGF-β signaling

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Single-cell analysis identifies TCF4 and ID3 as a molecular switch of mammary epithelial stem cell differentiation

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