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Identification of Pol IV and RDR2-dependent precursors of 24 nt siRNAs guiding de novo DNA methylation in Arabidopsis
Author / Creator:Blevins, Todd ; Podicheti, Ram ; Mishra, Vibhor ; Marasco, Michelle ; Wang, Jing ; Rusch, Doug ; Tang, Haixu ; Pikaard, Craig S
Publisher:England: eLife Science Publications, Ltd
Journal title:eLife, 2015-10, Vol.4, p.e09591-e09591
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Exploring breast tissue microbial composition and the association with breast cancer risk factors
Author / Creator:German, Rana ; Marino, Natascia ; Hemmerich, Chris ; Podicheti, Ram ; Rusch, Douglas B. ; Stiemsma, Leah T. ; Gao, Hongyu ; Xuei, Xiaoling ; Rockey, Pam ; Storniolo, Anna Maria
Publisher:England: BioMed Central Ltd
Journal title:Breast cancer research : BCR, 2023-07, Vol.25 (1), p.82-82, Article 82
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The coral pathogen Vibrio coralliilyticus uses a T6SS to secrete a group of novel anti-eukaryotic effectors that contribute to virulence
Author / Creator:Mass, Shir ; Cohen, Hadar ; Podicheti, Ram ; Rusch, Douglas B. ; Gerlic, Motti ; Ushijima, Blake ; van Kessel, Julia C. ; Bosis, Eran ; Salomon, Dor
Publisher:United States: Public Library of Science
Journal title:PLoS biology, 2024-09, Vol.22 (9), p.e3002734
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The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color
Author / Creator:Motamayor, Juan C ; Mockaitis, Keithanne ; Schmutz, Jeremy ; Haiminen, Niina ; III, Donald Livingstone ; Cornejo, Omar ; Findley, Seth D ; Zheng, Ping ; Utro, Filippo ; Royaert, Stefan ; Saski, Christopher ; Jenkins, Jerry ; Podicheti, Ram ; Zhao, Meixia ; Scheffler, Brian E ; Stack, Joseph C ; Feltus, Frank A ; Mustiga, Guiliana M ; Amores, Freddy ; Phillips, Wilbert ; Marelli, Jean Philippe ; May, Gregory D ; Shapiro, Howard ; Ma, Jianxin ; Bustamante, Carlos D ; Schnell, Raymond J ; Main, Dorrie ; Gilbert, Don ; Parida, Laxmi ; Kuhn, David N
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology (Online Edition), 2013-10, Vol.14 (6), p.r53-r53, Article r53
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Nitric oxide stimulates type IV MSHA pilus retraction in Vibrio cholerae via activation of the phosphodiesterase CdpA
Author / Creator:Hughes, Hannah Q. ; Floyd, Kyle A. ; Hossain, Sajjad ; Anantharaman, Sweta ; Kysela, David T. ; Zöldi, Mikls ; Barna, Lászl ; Yu, Yuanchen ; Kappler, Michael P. ; Dalia, Triana N. ; Podicheti, Ram C. ; Rusch, Douglas B. ; Zhuang, Meng ; Fraser, Cassandra L. ; Brun, Yves V. ; Jacobson, Stephen C. ; McKinlay, James B. ; Yildiz, Fitnat H. ; Boon, Elizabeth M. ; Dalia, Ankur B.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2022-02, Vol.119 (7), p.1-10
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Transcriptome-wide analysis of pseudouridylation in Drosophila melanogaster
Author / Creator:Song, Wan ; Podicheti, Ram ; Rusch, Douglas B ; Tracey, William Daniel
Publisher:US: Oxford University Press
Journal title:G3 : genes - genomes - genetics, 2023-03, Vol.13 (3)
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Oil biosynthesis in a basal angiosperm: transcriptome analysis of Persea Americana mesocarp
Author / Creator:Kilaru, Aruna ; Cao, Xia ; Dabbs, Parker B. ; Sung, Ha-Jung ; Rahman, Md. Mahbubur ; Thrower, Nicholas ; Zynda, Greg ; Podicheti, Ram ; Ibarra-Laclette, Enrique ; Herrera-Estrella, Luis ; Mockaitis, Keithanne ; Ohlrogge, John B.
Publisher:England: BioMed Central Ltd
Journal title:BMC plant biology, 2015-08, Vol.15 (1), p.203-203, Article 203
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Evolutionary Relationship of Disease Resistance Genes in Soybean and Arabidopsis Specific for the Pseudomonas syringae Effectors AvrB and AvrRpm1
Author / Creator:Ashfield, Tom ; Redditt, Thomas ; Russell, Andrew ; Kessens, Ryan ; Rodibaugh, Natalie ; Galloway, Lauren ; Kang, Qing ; Podicheti, Ram ; Innes, Roger W.
Publisher:United States: American Society of Plant Biologists
Journal title:Plant physiology (Bethesda), 2014-09, Vol.166 (1), p.235-251
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Composition and Functional Potential of the Human Mammary Microbiota Prior to and Following Breast Tumor Diagnosis
Author / Creator:Hoskinson, Courtney ; Zheng, Kelly ; Gabel, Jaelyn ; Kump, Annie ; German, Rana ; Podicheti, Ram ; Marino, Natascia ; Stiemsma, Leah T.
Publisher:United States: American Society for Microbiology
Journal title:mSystems, 2022-06, Vol.7 (3), p.e0148921-e0148921
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Transcriptome Profiling Reveals Matrisome Alteration as a Key Feature of Ovarian Cancer Progression
Author / Creator:Mitra, Sumegha ; Tiwari, Kartikeya ; Podicheti, Ram ; Pandhiri, Taruni ; Rusch, Douglas B. ; Bonetto, Andrea ; Zhang, Chi ; Mitra, Anirban K.
Publisher:Basel: MDPI AG
Journal title:Cancers, 2019-10, Vol.11 (10), p.1513
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Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors
Author / Creator:Orsini, Luisa ; Gilbert, Donald ; Podicheti, Ram ; Jansen, Mieke ; Brown, James B. ; Solari, Omid Shams ; Spanier, Katina I. ; Colbourne, John K. ; Rusch, Douglas B. ; Decaestecker, Ellen ; Asselman, Jana ; De Schamphelaere, Karel A.C. ; Ebert, Dieter ; Haag, Christoph R. ; Kvist, Jouni ; Laforsch, Christian ; Petrusek, Adam ; Beckerman, Andrew P. ; Little, Tom J. ; Chaturvedi, Anurag ; Pfrender, Michael E. ; De Meester, Luc ; Frilander, Mikko J.
Publisher:London: Nature Publishing Group UK
Journal title:Scientific data, 2016-05, Vol.3 (1), p.160030, Article 160030
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The Zinc-Finger Protein SOP1 Is Required for a Subset of the Nuclear Exosome Functions in Arabidopsis
Author / Creator:Hématy, Kian ; Bellec, Yannick ; Podicheti, Ram ; Bouteiller, Nathalie ; Anne, Pauline ; Morineau, Céline ; Haslam, Richard P. ; Beaudoin, Frederic ; Napier, Johnathan A. ; Mockaitis, Keithanne ; Gagliardi, Dominique ; Vaucheret, Hervé ; Lange, Heike ; Faure, Jean-Denis
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2016-02, Vol.12 (2), p.e1005817-e1005817
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FAM83A is a potential biomarker for breast cancer initiation
Author / Creator:Marino, Natascia ; German, Rana ; Podicheti, Ram ; Rockey, Pam ; Sandusky, George E. ; Temm, Constance J. ; Nakshatri, Harikrishna ; Addison, Rebekah J. ; Selman, Bryce ; Althouse, Sandra K. ; Storniolo, Anna Maria V.
Publisher:England: BioMed Central Ltd
Journal title:Biomarker research, 2022-02, Vol.10 (1), p.8-8, Article 8
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De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco hyemalis): genomic tools for an ecological model system
Author / Creator:Peterson, Mark P ; Whittaker, Danielle J ; Ambreth, Shruthi ; Sureshchandra, Suhas ; Buechlein, Aaron ; Podicheti, Ram ; Choi, Jeong-Hyeon ; Lai, Zhao ; Mockatis, Keithanne ; Colbourne, John ; Tang, Haixu ; Ketterson, Ellen D
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2012-07, Vol.13 (1), p.305-305
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Correction: The Zinc-Finger Protein SOP1 Is Required for a Subset of the Nuclear Exosome Functions in Arabidopsis
Author / Creator:Hématy, Kian ; Bellec, Yannick ; Podicheti, Ram ; Bouteiller, Nathalie ; Anne, Pauline ; Morineau, Céline ; Haslam, Richard P. ; Beaudoin, Frederic ; Napier, Johnathan A. ; Mockaitis, Keithanne ; Gagliardi, Dominique ; Vaucheret, Hervé ; Lange, Heike ; Faure, Jean-Denis
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2016-03, Vol.12 (3), p.e1005958-e1005958
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Plant Extracellular Vesicles Contain Diverse Small RNA Species and Are Enriched in 10- to 17-Nucleotide “Tiny” RNAs
Author / Creator:Baldrich, Patricia ; Rutter, Brian D. ; Karimi, Hana Zand ; Podicheti, Ram ; Meyers, Blake C. ; Innes, Roger W.
Journal title:The Plant cell, 2019-02, Vol.31 (2), p.315-324
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Erratum: Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors
Author / Creator:Orsini, Luisa ; Gilbert, Donald ; Podicheti, Ram ; Jansen, Mieke ; Brown, James B. ; Solari, Omid Shams ; Spanier, Katina I. ; Colbourne, John K. ; Rusch, Douglas B. ; Decaestecker, Ellen ; Asselman, Jana ; De Schamphelaere, Karel A.C. ; Ebert, Dieter ; Haag, Christoph R. ; Kvist, Jouni ; Laforsch, Christian ; Petrusek, Adam ; Beckerman, Andrew P. ; Little, Tom J. ; Chaturvedi, Anurag ; Pfrender, Michael E. ; De Meester, Luc ; Frilander, Mikko J.
Publisher:London: Nature Publishing Group UK
Journal title:Scientific data, 2017-01, Vol.4 (1), Article 170006
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Plant Extracellular Vesicles Contain Diverse Small RNA Species and Are Enriched in 10- to 17-Nucleotide “Tiny” RNAs
Author / Creator:Baldrich, Patricia ; Rutter, Brian D. ; Karimi, Hana Zand ; Podicheti, Ram ; Meyers, Blake C. ; Innes, Roger W.
Publisher:United States: American Society of Plant Biologists (ASPB)
Journal title:The Plant cell, 2019-02, Vol.31 (2), p.315-324
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The coral pathogen Vibrio coralliilyticus uses a T6SS to secrete a group of novel anti-eukaryotic effectors that contribute to virulence The coral pathogen Vibrio coralliilyticus uses a T6SS to secret...
Author / Creator:Shir Mass ; Hadar Cohen ; Ram Podicheti ; Douglas B. Rusch ; Motti Gerlic ; Blake Ushijima ; Julia C. van Kessel ; Eran Bosis ; Dor Salomon
Publisher:Public Library of Science (PLoS)
Journal title:PLoS biology, 2024-09, Vol.22 (9)
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Experimental competition induces immediate and lasting effects on the neurogenome in free-living female birds
Author / Creator:Bentz, Alexandra B. ; George, Elizabeth M. ; Wolf, Sarah E. ; Rusch, Douglas B. ; Podicheti, Ram ; Buechlein, Aaron ; Nephew, Kenneth P. ; Rosvall, Kimberly A.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2021-03, Vol.118 (13), p.1-9
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Showing 1 to 20 of 41 results

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Identification of Pol IV and RDR2-dependent precursors of 24 nt siRNAs guiding de novo DNA methylation in Arabidopsis

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Exploring breast tissue microbial composition and the association with breast cancer risk factors

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The coral pathogen Vibrio coralliilyticus uses a T6SS to secrete a group of novel anti-eukaryotic effectors that contribute to virulence

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The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color

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Nitric oxide stimulates type IV MSHA pilus retraction in Vibrio cholerae via activation of the phosphodiesterase CdpA

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Transcriptome-wide analysis of pseudouridylation in Drosophila melanogaster

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Oil biosynthesis in a basal angiosperm: transcriptome analysis of Persea Americana mesocarp

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Evolutionary Relationship of Disease Resistance Genes in Soybean and Arabidopsis Specific for the Pseudomonas syringae Effectors AvrB and AvrRpm1

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Composition and Functional Potential of the Human Mammary Microbiota Prior to and Following Breast Tumor Diagnosis

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Transcriptome Profiling Reveals Matrisome Alteration as a Key Feature of Ovarian Cancer Progression

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Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors

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The Zinc-Finger Protein SOP1 Is Required for a Subset of the Nuclear Exosome Functions in Arabidopsis

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FAM83A is a potential biomarker for breast cancer initiation

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De novo transcriptome sequencing in a songbird, the dark-eyed junco (Junco hyemalis): genomic tools for an ecological model system

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Correction: The Zinc-Finger Protein SOP1 Is Required for a Subset of the Nuclear Exosome Functions in Arabidopsis

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Plant Extracellular Vesicles Contain Diverse Small RNA Species and Are Enriched in 10- to 17-Nucleotide “Tiny” RNAs

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Erratum: Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors

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Plant Extracellular Vesicles Contain Diverse Small RNA Species and Are Enriched in 10- to 17-Nucleotide “Tiny” RNAs

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The coral pathogen Vibrio coralliilyticus uses a T6SS to secrete a group of novel anti-eukaryotic effectors that contribute to virulence The coral pathogen Vibrio coralliilyticus uses a T6SS to secret...

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Experimental competition induces immediate and lasting effects on the neurogenome in free-living female birds

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