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ArticlesPeer ReviewedFull Text
Global analysis of biosynthetic gene clusters reveals vast potential of secondary metabolite production in Penicillium species
Author / Creator:Nielsen, Jens Christian ; Grijseels, Sietske ; Prigent, Sylvain ; Ji, Boyang ; Dainat, Jacques ; Nielsen, Kristian Fog ; Frisvad, Jens Christian ; Workman, Mhairi ; Nielsen, Jens
Publisher:London: Nature Publishing Group UK
Journal title:Nature microbiology, 2017-04, Vol.2 (6), p.17044-17044, Article 17044
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ArticlesPeer ReviewedFull Text
SPITFIR(e): a supermaneuverable algorithm for fast denoising and deconvolution of 3D fluorescence microscopy images and videos
Author / Creator:Prigent, Sylvain ; Nguyen, Hoai-Nam ; Leconte, Ludovic ; Valades-Cruz, Cesar Augusto ; Hajj, Bassam ; Salamero, Jean ; Kervrann, Charles
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2023-01, Vol.13 (1), p.1489-34, Article 1489
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ArticlesPeer ReviewedFull Text
Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks
Author / Creator:Prigent, Sylvain ; Frioux, Clémence ; Dittami, Simon M. ; Thiele, Sven ; Larhlimi, Abdelhalim ; Collet, Guillaume ; Gutknecht, Fabien ; Got, Jeanne ; Eveillard, Damien ; Bourdon, Jérémie ; Plewniak, Frédéric ; Tonon, Thierry ; Siegel, Anne
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2017-01, Vol.13 (1), p.e1005276-e1005276
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ArticlesPeer ReviewedFull Text
Multi-omics quantitative data of tomato fruit unveils regulation modes of least variable metabolites
Author / Creator:Moing, Annick ; Berton, Thierry ; Roch, Léa ; Diarrassouba, Salimata ; Bernillon, Stéphane ; Arrivault, Stéphanie ; Deborde, Catherine ; Maucourt, Mickaël ; Cabasson, Cécile ; Bénard, Camille ; Prigent, Sylvain ; Jacob, Daniel ; Gibon, Yves ; Lemaire-Chamley, Martine
Publisher:England: BioMed Central Ltd
Journal title:BMC plant biology, 2023-07, Vol.23 (1), p.365-365, Article 365
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ArticlesPeer ReviewedFull Text
Metabolomics to Exploit the Primed Immune System of Tomato Fruit
Author / Creator:Luna, Estrella ; Flandin, Amélie ; Cassan, Cédric ; Prigent, Sylvain ; Chevanne, Chloé ; Kadiri, Camélia Feyrouse ; Gibon, Yves ; Pétriacq, Pierre
Publisher:Switzerland: MDPI
Journal title:Metabolites, 2020-03, Vol.10 (3), p.96
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ArticlesPeer ReviewedFull Text
Comparative Transcriptome Analysis Shows Conserved Metabolic Regulation during Production of Secondary Metabolites in Filamentous Fungi
Author / Creator:Nielsen, Jens Christian ; Prigent, Sylvain ; Grijseels, Sietske ; Workman, Mhairi ; Ji, Boyang ; Nielsen, Jens
Publisher:United States: American Society for Microbiology
Journal title:mSystems, 2019, Vol.4 (2), p.e00012-19
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ArticlesPeer ReviewedFull Text
BioImageIT: Open-source framework for integration of image data management with analysis
Author / Creator:Prigent, Sylvain ; Valades-Cruz, Cesar Augusto ; Leconte, Ludovic ; Maury, Léo ; Salamero, Jean ; Kervrann, Charles
Publisher:New York: Nature Publishing Group US
Journal title:Nature methods, 2022-11, Vol.19 (11), p.1328-1330
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ArticlesPeer ReviewedFull Text
Comparative genomics study reveals Red Sea Bacillus with characteristics associated with potential microbial cell factories (MCFs)
Author / Creator:Othoum, G. ; Prigent, S. ; Derouiche, A. ; Shi, L. ; Bokhari, A. ; Alamoudi, S. ; Bougouffa, S. ; Gao, X. ; Hoehndorf, R. ; Arold, S. T. ; Gojobori, T. ; Hirt, H. ; Lafi, F. F. ; Nielsen, J. ; Bajic, V. B. ; Mijakovic, I. ; Essack, M.
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2019-12, Vol.9 (1), p.19254-13, Article 19254
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ArticlesPeer ReviewedFull Text
Unlocking the potential of fungi: the QuantFung project
Author / Creator:Büttel, Zsófia ; Díaz, Rafael ; Dirnberger, Benedict ; Flak, Michal ; Grijseels, Sietske ; Kwon, Min Jin ; Nielsen, Jens Christian Froslev ; Nygård, Yvonne ; Phule, Pradeep ; Pohl, Carsten ; Prigent, Sylvain ; Randelovic, Milica ; Schütze, Tabea ; Troppens, Danielle ; Viggiano, Annarita
Publisher:England: BioMed Central
Journal title:Fungal biology and biotechnology, 2015, Vol.2 (1), p.6-6, Article 6
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ArticlesFull Text
STracking: a free and open-source python library for particle tracking and analysis
Author / Creator:Prigent, Sylvain ; Valades-Cruz, Cesar Augusto ; Leconte, Ludovic ; Salamero, Jean ; Kervrann, Charles
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2022-03
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ArticlesFull Text
A comparison of high resolution image reconstruction methods from confocal array detector with a new deconvolution algorithm
Author / Creator:Prigent, Sylvain ; Dutertre, Stéphanie ; Bidaud-Meynard, Aurélien ; Bertolin, Giulia ; Michaux, Grégoire ; Kervrann, Charles
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2022-01
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ArticlesFull Text
BioImageIT: Open-source framework for integration of image data-management with analysis
Author / Creator:Prigent, Sylvain ; Valades-Cruz, Cesar Augusto ; Leconte, Ludovic ; Maury, Léo ; Salamero, Jean ; Kervrann, Charles
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2021-12
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ArticlesFull Text
SPITFIR(e): A supermaneuverable algorithm for restoring 2D-3D fluorescence images and videos, and background subtraction
Author / Creator:Prigent, Sylvain ; Hoai-Nam Nguyen ; Leconte, Ludovic ; Valades-Cruz, Cesar Augusto ; Hajj, Bassam ; Salamero, Jean ; Kervrann, Charles
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2022-01
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ArticlesFull Text
Genome-scale model of Rhodotorula toruloides metabolism
Author / Creator:Tiukova, Ievgeniia A ; Prigent, Sylvain ; Sandgren, Mats ; Nielsen, Jens ; Kerkhoven, Eduard J
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2019-08
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ArticlesFull Text
Coordinated morphogenesis through tension-induced planar polarity
Author / Creator:Gillard, Ghislain ; Nicolle, Ophelie ; Thibault Brugiere ; Prigent, Sylvain ; Pinot, Mathieu ; Michaux, Gregoire
Publisher:Cold Spring Harbor: Cold Spring Harbor Laboratory Press
Journal title:bioRxiv, 2017-10
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ArticlesPeer ReviewedFull Text
Acknowledgement to Reviewers of Bioengineering in 2017
Publisher:Basel: MDPI AG
Journal title:Bioengineering (Basel), 2018-01, Vol.5 (1), p.5
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Global analysis of biosynthetic gene clusters reveals vast potential of secondary metabolite production in Penicillium species

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SPITFIR(e): a supermaneuverable algorithm for fast denoising and deconvolution of 3D fluorescence microscopy images and videos

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Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks

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Multi-omics quantitative data of tomato fruit unveils regulation modes of least variable metabolites

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Metabolomics to Exploit the Primed Immune System of Tomato Fruit

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Comparative Transcriptome Analysis Shows Conserved Metabolic Regulation during Production of Secondary Metabolites in Filamentous Fungi

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BioImageIT: Open-source framework for integration of image data management with analysis

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Comparative genomics study reveals Red Sea Bacillus with characteristics associated with potential microbial cell factories (MCFs)

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Unlocking the potential of fungi: the QuantFung project

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STracking: a free and open-source python library for particle tracking and analysis

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A comparison of high resolution image reconstruction methods from confocal array detector with a new deconvolution algorithm

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BioImageIT: Open-source framework for integration of image data-management with analysis

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SPITFIR(e): A supermaneuverable algorithm for restoring 2D-3D fluorescence images and videos, and background subtraction

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Genome-scale model of Rhodotorula toruloides metabolism

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Coordinated morphogenesis through tension-induced planar polarity

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Acknowledgement to Reviewers of Bioengineering in 2017

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