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31 results for Puchałka,+Jacek

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Chromatin-remodeling factor SMARCD2 regulates transcriptional networks controlling differentiation of neutrophil granulocytes
Author / Creator:Witzel, Maximilian ; Petersheim, Daniel ; Fan, Yanxin ; Bahrami, Ehsan ; Racek, Tomas ; Rohlfs, Meino ; Puchałka, Jacek ; Mertes, Christian ; Gagneur, Julien ; Ziegenhain, Christoph ; Enard, Wolfgang ; Stray-Pedersen, Asbjørg ; Arkwright, Peter D ; Abboud, Miguel R ; Pazhakh, Vahid ; Lieschke, Graham J ; Krawitz, Peter M ; Dahlhoff, Maik ; Schneider, Marlon R ; Wolf, Eckhard ; Horny, Hans-Peter ; Schmidt, Heinrich ; Schäffer, Alejandro A ; Klein, Christoph
Publisher:New York: Nature Publishing Group US
Journal title:Nature genetics, 2017-05, Vol.49 (5), p.742-752
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miR-181a/b-1 controls thymic selection of Treg cells and tunes their suppressive capacity
Author / Creator:Łyszkiewicz, Marcin ; Winter, Samantha J. ; Witzlau, Katrin ; Föhse, Lisa ; Brownlie, Rebecca ; Puchałka, Jacek ; Verheyden, Nikita A. ; Kunze-Schumacher, Heike ; Imelmann, Esther ; Blume, Jonas ; Raha, Solaiman ; Sekiya, Takashi ; Yoshimura, Akihiko ; Frueh, Jochen T. ; Ullrich, Evelyn ; Huehn, Jochen ; Weiss, Siegfried ; Gutierrez, Maximiliano G. ; Prinz, Immo ; Zamoyska, Rose ; Ziętara, Natalia ; Krueger, Andreas
Publisher:United States: Public Library of Science
Journal title:PLoS biology, 2019-03, Vol.17 (3), p.e2006716-e2006716
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Human FCHO1 deficiency reveals role for clathrin-mediated endocytosis in development and function of T cells
Author / Creator:Łyszkiewicz, Marcin ; Ziętara, Natalia ; Frey, Laura ; Pannicke, Ulrich ; Stern, Marcel ; Liu, Yanshan ; Fan, Yanxin ; Puchałka, Jacek ; Hollizeck, Sebastian ; Somekh, Ido ; Rohlfs, Meino ; Yilmaz, Tuğba ; Ünal, Ekrem ; Karakukcu, Musa ; Patiroğlu, Türkan ; Kellerer, Christina ; Karasu, Ebru ; Sykora, Karl-Walter ; Lev, Atar ; Simon, Amos ; Somech, Raz ; Roesler, Joachim ; Hoenig, Manfred ; Keppler, Oliver T. ; Schwarz, Klaus ; Klein, Christoph
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2020-02, Vol.11 (1), p.1031-15, Article 1031
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Genome-Scale Reconstruction and Analysis of the Pseudomonas putida KT2440 Metabolic Network Facilitates Applications in Biotechnology
Author / Creator:Puchałka, Jacek ; Oberhardt, Matthew A. ; Godinho, Miguel ; Bielecka, Agata ; Regenhardt, Daniela ; Timmis, Kenneth N. ; Papin, Jason A. ; Martins dos Santos, Vítor A. P.
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2008-10, Vol.4 (10), p.e1000210
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Reconciliation of genome-scale metabolic reconstructions for comparative systems analysis
Author / Creator:Oberhardt, M ; Puchalka, J ; Martins dos Santos, V.A.P ; Papin, J.A
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2011-03, Vol.7 (3), p.e1001116-e1001116
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JAGN1 deficiency causes aberrant myeloid cell homeostasis and congenital neutropenia
Author / Creator:Boztug, Kaan ; Järvinen, Päivi M ; Salzer, Elisabeth ; Racek, Tomas ; Mönch, Sebastian ; Garncarz, Wojciech ; Gertz, E Michael ; Schäffer, Alejandro A ; Antonopoulos, Aristotelis ; Haslam, Stuart M ; Schieck, Lena ; Puchałka, Jacek ; Diestelhorst, Jana ; Appaswamy, Giridharan ; Lescoeur, Brigitte ; Giambruno, Roberto ; Bigenzahn, Johannes W ; Elling, Ulrich ; Pfeifer, Dietmar ; Conde, Cecilia Domínguez ; Albert, Michael H ; Welte, Karl ; Brandes, Gudrun ; Sherkat, Roya ; van der Werff ten Bosch, Jutte ; Rezaei, Nima ; Etzioni, Amos ; Bellanné-Chantelot, Christine ; Superti-Furga, Giulio ; Penninger, Josef M ; Bennett, Keiryn L ; von Blume, Julia ; Dell, Anne ; Donadieu, Jean ; Klein, Christoph
Publisher:London: Nature Publishing Group UK
Journal title:Nature genetics, 2014-09, Vol.46 (9), p.1021-1027
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From the Environment to the Host: Re-Wiring of the Transcriptome of Pseudomonas aeruginosa from 22°C to 37°C
Author / Creator:Barbier, Mariette ; Damron, F. Heath ; Bielecki, Piotr ; Suárez-Diez, María ; Puchałka, Jacek ; Albertí, Sebastian ; dos Santos, Vitor Martins ; Goldberg, Joanna B.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2014-02, Vol.9 (2), p.e89941-e89941
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Dissecting the energy metabolism in Mycoplasma pneumoniae through genome‐scale metabolic modeling
Author / Creator:Wodke, Judith A H ; Puchałka, Jacek ; Lluch‐Senar, Maria ; Marcos, Josep ; Yus, Eva ; Godinho, Miguel ; Gutiérrez‐Gallego, Ricardo ; dos Santos, Vitor A P Martins ; Serrano, Luis ; Klipp, Edda ; Maier, Tobias
Publisher:London: Nature Publishing Group UK
Journal title:Molecular systems biology, 2013, Vol.9 (1), p.653-n/a
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Author Correction: Human FCHO1 deficiency reveals role for clathrin-mediated endocytosis in development and function of T cells
Author / Creator:Łyszkiewicz, Marcin ; Ziętara, Natalia ; Frey, Laura ; Pannicke, Ulrich ; Stern, Marcel ; Liu, Yanshan ; Fan, Yanxin ; Puchałka, Jacek ; Hollizeck, Sebastian ; Somekh, Ido ; Rohlfs, Meino ; Yilmaz, Tuğba ; Ünal, Ekrem ; Karakukcu, Musa ; Patiroğlu, Türkan ; Kellerer, Christina ; Karasu, Ebru ; Sykora, Karl-Walter ; Lev, Atar ; Simon, Amos ; Somech, Raz ; Roesler, Joachim ; Hoenig, Manfred ; Keppler, Oliver T. ; Schwarz, Klaus ; Klein, Christoph
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2020-04, Vol.11 (1), p.1963-1963, Article 1963
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In-Vivo Expression Profiling of Pseudomonas aeruginosa Infections Reveals Niche-Specific and Strain-Independent Transcriptional Programs
Author / Creator:Bielecki, P ; Puchalka, J ; Wos-Oxley, M.L ; Martins dos Santos, V.A.P
Publisher:United States: Public Library of Science
Journal title:PloS one, 2011-09, Vol.6 (9), p.e24235-e24235
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Genotypic and phenotypic analyses of a Pseudomonas aeruginosa chronic bronchiectasis isolate reveal differences from cystic fibrosis and laboratory strains
Author / Creator:Varga, John J. ; Barbier, Mariette ; Mulet, Xavier ; Bielecki, Piotr ; Bartell, Jennifer A. ; Owings, Joshua P. ; Martinez-Ramos, Inmaculada ; Hittle, Lauren E. ; Davis, Michael R. ; Damron, F. Heath ; Liechti, George W. ; Puchałka, Jacek ; dos Santos, Vitor A. P. Martins ; Ernst, Robert K. ; Papin, Jason A. ; Albertí, Sebastian ; Oliver, Antonio ; Goldberg, Joanna B.
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2015-10, Vol.16 (1), p.883-883, Article 883
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Immunoglobulins drive terminal maturation of splenic dendritic cells
Author / Creator:Ziętara, Natalia ; Łyszkiewicz, Marcin ; Puchałka, Jacek ; Pei, Gang ; Gutierrez, Maximiliano Gabriel ; Lienenklaus, Stefan ; Hobeika, Elias ; Reth, Michael ; Santos, Vitor A. P. Martins dos ; Krueger, Andreas ; Weiss, Siegfried
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2013-02, Vol.110 (6), p.2282-2287
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Phage-mediated Dispersal of Biofilm and Distribution of Bacterial Virulence Genes Is Induced by Quorum Sensing
Author / Creator:Rossmann, Friederike S. ; Racek, Tomas ; Wobser, Dominique ; Puchalka, Jacek ; Rabener, Elaine M. ; Reiger, Matthias ; Hendrickx, Antoni P. A. ; Diederich, Ann-Kristin ; Jung, Kirsten ; Klein, Christoph ; Huebner, Johannes
Publisher:United States: Public Library of Science
Journal title:PLoS pathogens, 2015-02, Vol.11 (2), p.e1004653-e1004653
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A Congenital Neutrophil Defect Syndrome Associated with Mutations in VPS45
Author / Creator:Vilboux, Thierry ; Lev, Atar ; Malicdan, May Christine V ; Simon, Amos J ; Järvinen, Päivi ; Racek, Tomas ; Puchalka, Jacek ; Sood, Raman ; Carrington, Blake ; Bishop, Kevin ; Mullikin, James ; Huizing, Marjan ; Garty, Ben Zion ; Eyal, Eran ; Wolach, Baruch ; Gavrieli, Ronit ; Toren, Amos ; Soudack, Michalle ; Atawneh, Osama M ; Babushkin, Tatiana ; Schiby, Ginette ; Cullinane, Andrew ; Avivi, Camila ; Polak-Charcon, Sylvie ; Barshack, Iris ; Amariglio, Ninette ; Rechavi, Gideon ; van der Werff ten Bosch, Jutte ; Anikster, Yair ; Klein, Christoph ; Gahl, William A ; Somech, Raz
Publisher:Waltham, MA: Massachusetts Medical Society
Journal title:The New England journal of medicine, 2013-07, Vol.369 (1), p.54-65
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The metabolic response of P. putida KT2442 producing high levels of polyhydroxyalkanoate under single- and multiple-nutrient-limited growth: Highlights from a multi-level omics approach
Author / Creator:Poblete-Castro, Ignacio ; Escapa, Isabel F ; Jäger, Christian ; Puchalka, Jacek ; Chi Lam, Carolyn ; Schomburg, Dietmar ; Prieto, María ; Martins dos Santos, Vítor AP
Publisher:England: BioMed Central Ltd
Journal title:Microbial cell factories, 2012-03, Vol.11 (1), p.34-34
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Bridging the Gap between Stochastic and Deterministic Regimes in the Kinetic Simulations of the Biochemical Reaction Networks
Author / Creator:Puchałka, Jacek ; Kierzek, Andrzej M.
Publisher:United States: Elsevier Inc
Journal title:Biophysical journal, 2004-03, Vol.86 (3), p.1357-1372
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Novel Spontaneous Deletion of Artemis Exons 10 and 11 in Mice Leads to T- and B-Cell Deficiency
Author / Creator:Barthels, Christian ; Puchałka, Jacek ; Racek, Tomas ; Klein, Christoph ; Brocker, Thomas
Publisher:United States: Public Library of Science
Journal title:PloS one, 2013-09, Vol.8 (9), p.e74838
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Reconciling in vivo and in silico key biological parameters of Pseudomonas putida KT2440 during growth on glucose under carbon-limited condition
Author / Creator:van Duuren, Jozef B J H ; Puchałka, Jacek ; Mars, Astrid E ; Bücker, René ; Eggink, Gerrit ; Wittmann, Christoph ; Dos Santos, Vítor A P Martins
Publisher:England: BioMed Central
Journal title:BMC biotechnology, 2013-10, Vol.13 (1), p.93-93
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Genomotyping of Pseudomonas putida strains using P. putida KT2440-based high-density DNA microarrays: implications for transcriptomics studies
Author / Creator:Ballerstedt, H ; Volkers, R.J.M ; Mars, A.E ; Hallsworth, J.E ; Martins dos Santos, V.A ; Puchalka, J ; Duuren, J.B.J.H. van ; Eggink, G ; Timmis, K.N ; Bont, J.A.M. de ; Wery, J
Publisher:Berlin: Springer
Journal title:Applied microbiology and biotechnology, 2007-07, Vol.75 (5), p.1133-1142
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Reconciling in vivo and in silico key biological parameters of Pseudomonas putidaKT2440 during growth on glucose under carbon-limited condition
Author / Creator:van Duuren, Jozef BJH ; Puchałka, Jacek ; Mars, Astrid E ; Bücker, René ; Eggink, Gerrit ; Wittmann, Christoph ; dos Santos, Vítor AP Martins
Publisher:BioMed Central Ltd
Journal title:BMC biotechnology, 2013-10, Vol.13 (1), Article 93
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Showing 1 to 20 of 31 results

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Chromatin-remodeling factor SMARCD2 regulates transcriptional networks controlling differentiation of neutrophil granulocytes

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miR-181a/b-1 controls thymic selection of Treg cells and tunes their suppressive capacity

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Human FCHO1 deficiency reveals role for clathrin-mediated endocytosis in development and function of T cells

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Genome-Scale Reconstruction and Analysis of the Pseudomonas putida KT2440 Metabolic Network Facilitates Applications in Biotechnology

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Reconciliation of genome-scale metabolic reconstructions for comparative systems analysis

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JAGN1 deficiency causes aberrant myeloid cell homeostasis and congenital neutropenia

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From the Environment to the Host: Re-Wiring of the Transcriptome of Pseudomonas aeruginosa from 22°C to 37°C

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Dissecting the energy metabolism in Mycoplasma pneumoniae through genome‐scale metabolic modeling

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Author Correction: Human FCHO1 deficiency reveals role for clathrin-mediated endocytosis in development and function of T cells

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In-Vivo Expression Profiling of Pseudomonas aeruginosa Infections Reveals Niche-Specific and Strain-Independent Transcriptional Programs

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Genotypic and phenotypic analyses of a Pseudomonas aeruginosa chronic bronchiectasis isolate reveal differences from cystic fibrosis and laboratory strains

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Immunoglobulins drive terminal maturation of splenic dendritic cells

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Phage-mediated Dispersal of Biofilm and Distribution of Bacterial Virulence Genes Is Induced by Quorum Sensing

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A Congenital Neutrophil Defect Syndrome Associated with Mutations in VPS45

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The metabolic response of P. putida KT2442 producing high levels of polyhydroxyalkanoate under single- and multiple-nutrient-limited growth: Highlights from a multi-level omics approach

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Bridging the Gap between Stochastic and Deterministic Regimes in the Kinetic Simulations of the Biochemical Reaction Networks

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Novel Spontaneous Deletion of Artemis Exons 10 and 11 in Mice Leads to T- and B-Cell Deficiency

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Reconciling in vivo and in silico key biological parameters of Pseudomonas putida KT2440 during growth on glucose under carbon-limited condition

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Genomotyping of Pseudomonas putida strains using P. putida KT2440-based high-density DNA microarrays: implications for transcriptomics studies

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Reconciling in vivo and in silico key biological parameters of Pseudomonas putidaKT2440 during growth on glucose under carbon-limited condition

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