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ArticlesPeer ReviewedFull Text
Culturing of female bladder bacteria reveals an interconnected urogenital microbiota
Author / Creator:Thomas-White, Krystal ; Forster, Samuel C. ; Kumar, Nitin ; Van Kuiken, Michelle ; Putonti, Catherine ; Stares, Mark D. ; Hilt, Evann E. ; Price, Travis K. ; Wolfe, Alan J. ; Lawley, Trevor D.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2018-04, Vol.9 (1), p.1557-7, Article 1557
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virMine: automated detection of viral sequences from complex metagenomic samples
Author / Creator:Garretto, Andrea ; Hatzopoulos, Thomas ; Putonti, Catherine
Publisher:United States: PeerJ. Ltd
Journal title:PeerJ (San Francisco, CA), 2019-04, Vol.7, p.e6695-e6695, Article e6695
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Diversity of Pseudomonas aeruginosa Temperate Phages
Author / Creator:Johnson, Genevieve ; Banerjee, Swarnali ; Putonti, Catherine
Publisher:United States: American Society for Microbiology
Journal title:mSphere, 2022-02, Vol.7 (1), p.e0101521
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Cataloging the phylogenetic diversity of human bladder bacterial isolates
Author / Creator:Du, Jingjie ; Khemmani, Mark ; Halverson, Thomas ; Ene, Adriana ; Limeira, Roberto ; Tinawi, Lana ; Hochstedler-Kramer, Baylie R. ; Noronha, Melline Fontes ; Putonti, Catherine ; Wolfe, Alan J.
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2024-03, Vol.25 (1), p.75-75, Article 75
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Comparative genomic analysis of clinical Enterococcus faecalis distinguishes strains isolated from the bladder
Author / Creator:Hochstedler-Kramer, Baylie R. ; Ene, Adriana ; Putonti, Catherine ; Wolfe, Alan J.
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2023-12, Vol.24 (1), p.752-752, Article 752
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Coliphages of the human urinary microbiota
Author / Creator:Crum, Elias ; Merchant, Zubia ; Ene, Adriana ; Miller-Ensminger, Taylor ; Johnson, Genevieve ; Wolfe, Alan J. ; Putonti, Catherine
Publisher:United States: Public Library of Science
Journal title:PloS one, 2023-04, Vol.18 (4), p.e0283930-e0283930
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When Plaquing Is Not Possible: Computational Methods for Detecting Induced Phages
Author / Creator:Miller-Ensminger, Taylor ; Johnson, Genevieve ; Banerjee, Swarnali ; Putonti, Catherine
Publisher:Switzerland: MDPI AG
Journal title:Viruses, 2023-02, Vol.15 (2), p.420
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Genomic insights into Lactobacillus gasseri and Lactobacillus paragasseri
Author / Creator:Ene, Adriana ; Stegman, Natalie ; Wolfe, Alan ; Putonti, Catherine
Publisher:United States: PeerJ. Ltd
Journal title:PeerJ (San Francisco, CA), 2022-06, Vol.10, p.e13479-e13479, Article e13479
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Introducing Lu-1, a Novel Lactobacillus jensenii Phage Abundant in the Urogenital Tract
Author / Creator:Miller-Ensminger, Taylor ; Mormando, Rita ; Maskeri, Laura ; Shapiro, Jason W. ; Wolfe, Alan J. ; Putonti, Catherine
Publisher:United States: Public Library of Science
Journal title:PloS one, 2020-06, Vol.15 (6), p.e0234159-e0234159
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Rephine.r: a pipeline for correcting gene calls and clusters to improve phage pangenomes and phylogenies
Author / Creator:Shapiro, Jason W. ; Putonti, Catherine
Publisher:United States: PeerJ. Ltd
Journal title:PeerJ (San Francisco, CA), 2021-08, Vol.9, p.e11950-e11950, Article e11950
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Bacteriophages isolated from Lake Michigan demonstrate broad host-range across several bacterial phyla
Author / Creator:Malki, Kema ; Kula, Alex ; Bruder, Katherine ; Sible, Emily ; Hatzopoulos, Thomas ; Steidel, Stephanie ; Watkins, Siobhan C. ; Putonti, Catherine
Publisher:England: BioMed Central Ltd
Journal title:Virology journal, 2015-10, Vol.12 (1), p.164-164, Article 164
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Mimicking prophage induction in the body: induction in the lab with pH gradients
Author / Creator:Miller-Ensminger, Taylor ; Garretto, Andrea ; Stark, Nicole ; Putonti, Catherine
Publisher:San Diego: PeerJ. Ltd
Journal title:PeerJ (San Francisco, CA), 2020-08, Vol.8, p.e9718-e9718, Article e9718
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Discriminating between JCPyV and BKPyV in Urinary Virome Data Sets
Author / Creator:Mormando, Rita ; Wolfe, Alan J. ; Putonti, Catherine
Publisher:Basel: MDPI AG
Journal title:Viruses, 2021-05, Vol.13 (6), p.1041
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Forming Consensus To Advance Urobiome Research
Author / Creator:Brubaker, Linda ; Gourdine, Jean-Philippe F. ; Siddiqui, Nazema Y. ; Holland, Amanda ; Halverson, Thomas ; Limeria, Roberto ; Pride, David ; Ackerman, Lenore ; Forster, Catherine S. ; Jacobs, Kristin M. ; Thomas-White, Krystal J. ; Putonti, Catherine ; Dong, Qunfeng ; Weinstein, Michael ; Lukacz, Emily S. ; Karstens, Lisa ; Wolfe, Alan J.
Publisher:United States: American Society for Microbiology
Journal title:mSystems, 2021-08, Vol.6 (4), p.e0137120-e0137120
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ArticlesPeer ReviewedFull Text
Exploring the genotypic and phenotypic differences distinguishing Lactobacillus jensenii and Lactobacillus mulieris
Author / Creator:Ene, Adriana ; Banerjee, Swarnali ; Wolfe, Alan J. ; Putonti, Catherine
Publisher:United States: American Society for Microbiology
Journal title:mSphere, 2023-08, Vol.8 (4), p.e0056222-e0056222
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Pseudomonas PB1-Like Phages: Whole Genomes from Metagenomes Offer Insight into an Abundant Group of Bacteriophages
Author / Creator:Watkins, Siobhan C. ; Sible, Emily ; Putonti, Catherine
Publisher:Switzerland: MDPI AG
Journal title:Viruses, 2018-06, Vol.10 (6), p.331
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CBDB: The codon bias database
Author / Creator:Hilterbrand, Adam ; Saelens, Joseph ; Putonti, Catherine
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2012-04, Vol.13 (1), p.62-62, Article 62
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ArticlesPeer ReviewedFull Text
Genomes of Gardnerella Strains Reveal an Abundance of Prophages within the Bladder Microbiome
Author / Creator:Malki, Kema ; Shapiro, Jason W. ; Price, Travis K. ; Hilt, Evann E. ; Thomas-White, Krystal ; Sircar, Trina ; Rosenfeld, Amy B. ; Kuffel, Gina ; Zilliox, Michael J. ; Wolfe, Alan J. ; Putonti, Catherine
Publisher:United States: Public Library of Science
Journal title:PloS one, 2016-11, Vol.11 (11), p.e0166757-e0166757
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Vagococcus fluvialis isolation and sequencing from urine of healthy cattle
Author / Creator:Giannattasio-Ferraz, Silvia ; Ene, Adriana ; Maskeri, Laura ; Oliveira, André Penido ; Barbosa-Stancioli, Edel F ; Putonti, Catherine
Publisher:England: Oxford University Press
Journal title:G3 : genes - genomes - genetics, 2021-01, Vol.11 (1)
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Comparative Genomic Study of Streptococcus anginosus Reveals Distinct Group of Urinary Strains
Author / Creator:Prasad, Ananya ; Ene, Adriana ; Jablonska, Sandra ; Du, Jingjie ; Wolfe, Alan J. ; Putonti, Catherine
Publisher:United States: American Society for Microbiology
Journal title:mSphere, 2023-04, Vol.8 (2), p.e0068722-e0068722
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Showing 1 to 20 of 70 results

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Culturing of female bladder bacteria reveals an interconnected urogenital microbiota

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virMine: automated detection of viral sequences from complex metagenomic samples

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Diversity of Pseudomonas aeruginosa Temperate Phages

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Cataloging the phylogenetic diversity of human bladder bacterial isolates

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Comparative genomic analysis of clinical Enterococcus faecalis distinguishes strains isolated from the bladder

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Coliphages of the human urinary microbiota

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When Plaquing Is Not Possible: Computational Methods for Detecting Induced Phages

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Genomic insights into Lactobacillus gasseri and Lactobacillus paragasseri

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Introducing Lu-1, a Novel Lactobacillus jensenii Phage Abundant in the Urogenital Tract

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Rephine.r: a pipeline for correcting gene calls and clusters to improve phage pangenomes and phylogenies

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Bacteriophages isolated from Lake Michigan demonstrate broad host-range across several bacterial phyla

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Mimicking prophage induction in the body: induction in the lab with pH gradients

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Discriminating between JCPyV and BKPyV in Urinary Virome Data Sets

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Forming Consensus To Advance Urobiome Research

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Exploring the genotypic and phenotypic differences distinguishing Lactobacillus jensenii and Lactobacillus mulieris

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Pseudomonas PB1-Like Phages: Whole Genomes from Metagenomes Offer Insight into an Abundant Group of Bacteriophages

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CBDB: The codon bias database

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Genomes of Gardnerella Strains Reveal an Abundance of Prophages within the Bladder Microbiome

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Vagococcus fluvialis isolation and sequencing from urine of healthy cattle

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Comparative Genomic Study of Streptococcus anginosus Reveals Distinct Group of Urinary Strains

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