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Rasko, David A
Journal title:American Men & Women of Science : A Biographical Directory of Today’s Leaders in Physical, Biological and Related Sciences: QIU-SAQ, 2022, p.9331-9331
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Rasko, David A
Journal title:American Men & Women of Science : A Biographical Directory of Today’s Leaders in Physical, Biological and Related Sciences: RA-SAU, 2021, p.9300-9300
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ArticlesPeer ReviewedFull Text
Hybrid error correction and de novo assembly of single-molecule sequencing reads
Author / Creator:Koren, Sergey ; Schatz, Michael C ; Walenz, Brian P ; Martin, Jeffrey ; Howard, Jason T ; Ganapathy, Ganeshkumar ; Wang, Zhong ; Rasko, David A ; McCombie, W Richard ; Jarvis, Erich D ; Phillippy, Adam M
Publisher:New York: Nature Publishing Group US
Journal title:Nature biotechnology, 2012-07, Vol.30 (7), p.693-700
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Genomic diversity of non-diarrheagenic fecal Escherichia coli from children in sub-Saharan Africa and south Asia and their relatedness to diarrheagenic E. coli
Author / Creator:Hazen, Tracy H. ; Michalski, Jane M. ; Tennant, Sharon M. ; Rasko, David. A.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2023-03, Vol.14 (1), p.1400-13, Article 1400
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ArticlesPeer ReviewedFull Text
Bacterial genome sequencing in the clinic: bioinformatic challenges and solutions
Author / Creator:Fricke, W. Florian ; Rasko, David A.
Publisher:London: Nature Publishing Group UK
Journal title:Nature reviews. Genetics, 2014-01, Vol.15 (1), p.49-55
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ArticlesPeer ReviewedFull Text
Best practices on the differential expression analysis of multi-species RNA-seq
Author / Creator:Chung, Matthew ; Bruno, Vincent M. ; Rasko, David A. ; Cuomo, Christina A. ; Muñoz, José F. ; Livny, Jonathan ; Shetty, Amol C. ; Mahurkar, Anup ; Dunning Hotopp, Julie C.
Publisher:England: BioMed Central
Journal title:Genome Biology, 2021-04, Vol.22 (1), p.121-121, Article 121
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ArticlesPeer ReviewedFull Text
Host-specific induction of Escherichia coli fitness genes during human urinary tract infection
Author / Creator:Subashchandrabose, Sargurunathan ; Hazen, Tracy H. ; Brumbaugh, Ariel R. ; Hirnpsl, Stephanie D. ; Smith, Sara N. ; Ernst, Robert D. ; Rasko, David A. ; Mobley, Harry L. T.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2014-12, Vol.111 (51), p.18327-18332
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ArticlesPeer ReviewedFull Text
Locus of Adhesion and Autoaggregation (LAA), a pathogenicity island present in emerging Shiga Toxin–producing Escherichia coli strains
Author / Creator:Montero, David A. ; Velasco, Juliana ; Del Canto, Felipe ; Puente, Jose L. ; Padola, Nora L. ; Rasko, David A. ; Farfán, Mauricio ; Salazar, Juan C. ; Vidal, Roberto
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2017-08, Vol.7 (1), p.7011-13, Article 7011
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ArticlesPeer ReviewedFull Text
The large-scale blast score ratio (LS-BSR) pipeline: a method to rapidly compare genetic content between bacterial genomes
Author / Creator:Sahl, Jason W. ; Caporaso, J. Gregory ; Rasko, David A. ; Keim, Paul
Publisher:United States: PeerJ. Ltd
Journal title:PeerJ (San Francisco, CA), 2014-04, Vol.2, p.e332
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ArticlesPeer ReviewedFull Text
The QseC Adrenergic Signaling Cascade in Enterohemorrhagic E. coli (EHEC)
Author / Creator:Hughes, David T. ; Clarke, Marcie B. ; Yamamoto, Kaneyoshi ; Rasko, David A. ; Sperandio, Vanessa
Publisher:United States: Public Library of Science
Journal title:PLoS pathogens, 2009-08, Vol.5 (8), p.e1000553
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An integrated genomic and transcriptomic survey of mucormycosis-causing fungi
Author / Creator:Chibucos, Marcus C. ; Soliman, Sameh ; Gebremariam, Teclegiorgis ; Lee, Hongkyu ; Daugherty, Sean ; Orvis, Joshua ; Shetty, Amol C. ; Crabtree, Jonathan ; Hazen, Tracy H. ; Etienne, Kizee A. ; Kumari, Priti ; O’Connor, Timothy D. ; Rasko, David A. ; Filler, Scott G. ; Fraser, Claire M. ; Lockhart, Shawn R. ; Skory, Christopher D. ; Ibrahim, Ashraf S. ; Bruno, Vincent M.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2016-07, Vol.7 (1), p.12218-11, Article 12218
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ArticlesPeer ReviewedFull Text
Targeting QseC Signaling and Virulence for Antibiotic Development
Author / Creator:Rasko, David A ; Moreira, Cristiano G ; Li, De Run ; Reading, Nicola C ; Ritchie, Jennifer M ; Waldor, Matthew K ; Williams, Noelle ; Taussig, Ron ; Wei, Shuguang ; Roth, Michael ; Hughes, David T ; Huntley, Jason F ; Fina, Maggy W ; Falck, John R ; Sperandio, Vanessa
Publisher:Washington, DC: American Association for the Advancement of Science
Journal title:Science (American Association for the Advancement of Science), 2008-08, Vol.321 (5892), p.1078-1080
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ArticlesPeer ReviewedFull Text
Redefining enteroaggregative Escherichia coli (EAEC): Genomic characterization of epidemiological EAEC strains
Author / Creator:Boisen, Nadia ; Østerlund, Mark T. ; Joensen, Katrine G. ; Santiago, Araceli E. ; Mandomando, Inacio ; Cravioto, Alejandro ; Chattaway, Marie A. ; Gonyar, Laura A. ; Overballe-Petersen, Søren ; Stine, O. Colin ; Rasko, David A. ; Scheutz, Flemming ; Nataro, James P.
Publisher:United States: Public Library of Science
Journal title:PLoS neglected tropical diseases, 2020-09, Vol.14 (9), p.e0008613
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ArticlesPeer ReviewedFull Text
Refining the pathovar paradigm via phylogenomics of the attaching and effacing Escherichia coli
Author / Creator:Hazen, Tracy H. ; Sahl, Jason W. ; Fraser, Claire M. ; Donnenberg, Michael S. ; Scheutz, Flemming ; Rasko, David A.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2013-07, Vol.110 (31), p.12810-12815
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Comparative genomics and transcriptomics of Escherichia coli isolates carrying virulence factors of both enteropathogenic and enterotoxigenic E. coli
Author / Creator:Hazen, Tracy H. ; Michalski, Jane ; Luo, Qingwei ; Shetty, Amol C. ; Daugherty, Sean C. ; Fleckenstein, James M. ; Rasko, David A.
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2017-06, Vol.7 (1), p.3513-17, Article 3513
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Conservation and global distribution of non-canonical antigens in Enterotoxigenic Escherichia coli
Author / Creator:Kuhlmann, F. Matthew ; Martin, John ; Hazen, Tracy H. ; Vickers, Tim J. ; Pashos, Madeline ; Okhuysen, Pablo C. ; Gómez-Duarte, Oscar G. ; Cebelinski, Elizabeth ; Boxrud, Dave ; del Canto, Felipe ; Vidal, Roberto ; Qadri, Firdausi ; Mitreva, Makedonka ; Rasko, David A. ; Fleckenstein, James M.
Publisher:United States: Public Library of Science
Journal title:PLoS neglected tropical diseases, 2019-11, Vol.13 (11), p.e0007825
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ArticlesPeer ReviewedFull Text
LPS remodeling is an evolved survival strategy for bacteria
Author / Creator:Li, Yanyan ; Powell, Daniel A. ; Shaffer, Scott A. ; Rasko, David A. ; Pelletier, Mark R. ; Leszyk, John D. ; Scott, Alison J. ; Masoudi, Ali ; Goodlett, David R. ; Wang, Xiaoyuan ; Raetz, Christian R. H. ; Ernst, Robert K.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2012-05, Vol.109 (22), p.8716-8721
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ArticlesPeer ReviewedFull Text
Escherichia coli Global Gene Expression in Urine from Women with Urinary Tract Infection
Author / Creator:Hagan, Erin C. ; Lloyd, Amanda L. ; Rasko, David A. ; Faerber, Gary J. ; Mobley, Harry L. T.
Publisher:United States: Public Library of Science
Journal title:PLoS pathogens, 2010-11, Vol.6 (11), p.e1001187
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ArticlesPeer ReviewedFull Text
two-component system QseEF and the membrane protein QseG link adrenergic and stress sensing to bacterial pathogenesis
Author / Creator:Reading, Nicola C ; Rasko, David A ; Torres, Alfredo G ; Sperandio, Vanessa
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2009-04, Vol.106 (14), p.5889-5894
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ArticlesPeer ReviewedFull Text
Conservation and Immunogenicity of Novel Antigens in Diverse Isolates of Enterotoxigenic Escherichia coli
Author / Creator:Luo, Qingwei ; Qadri, Firdausi ; Kansal, Rita ; Rasko, David A. ; Sheikh, Alaullah ; Fleckenstein, James M.
Publisher:United States: Public Library of Science
Journal title:PLoS neglected tropical diseases, 2015-01, Vol.9 (1), p.e0003446
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Rasko, David A

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Rasko, David A

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Hybrid error correction and de novo assembly of single-molecule sequencing reads

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Genomic diversity of non-diarrheagenic fecal Escherichia coli from children in sub-Saharan Africa and south Asia and their relatedness to diarrheagenic E. coli

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Bacterial genome sequencing in the clinic: bioinformatic challenges and solutions

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Best practices on the differential expression analysis of multi-species RNA-seq

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Host-specific induction of Escherichia coli fitness genes during human urinary tract infection

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Locus of Adhesion and Autoaggregation (LAA), a pathogenicity island present in emerging Shiga Toxin–producing Escherichia coli strains

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The large-scale blast score ratio (LS-BSR) pipeline: a method to rapidly compare genetic content between bacterial genomes

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The QseC Adrenergic Signaling Cascade in Enterohemorrhagic E. coli (EHEC)

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An integrated genomic and transcriptomic survey of mucormycosis-causing fungi

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Targeting QseC Signaling and Virulence for Antibiotic Development

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Redefining enteroaggregative Escherichia coli (EAEC): Genomic characterization of epidemiological EAEC strains

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Refining the pathovar paradigm via phylogenomics of the attaching and effacing Escherichia coli

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Comparative genomics and transcriptomics of Escherichia coli isolates carrying virulence factors of both enteropathogenic and enterotoxigenic E. coli

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Conservation and global distribution of non-canonical antigens in Enterotoxigenic Escherichia coli

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LPS remodeling is an evolved survival strategy for bacteria

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Escherichia coli Global Gene Expression in Urine from Women with Urinary Tract Infection

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two-component system QseEF and the membrane protein QseG link adrenergic and stress sensing to bacterial pathogenesis

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Conservation and Immunogenicity of Novel Antigens in Diverse Isolates of Enterotoxigenic Escherichia coli

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