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109 results for Rattray,+Magnus

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ArticlesPeer ReviewedFull Text
BGP: identifying gene-specific branching dynamics from single-cell data with a branching Gaussian process
Author / Creator:Boukouvalas, Alexis ; Hensman, James ; Rattray, Magnus
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2018-05, Vol.19 (1), p.65-65, Article 65
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Combined modelling of mRNA decay dynamics and single-molecule imaging in the Drosophila embryo uncovers a role for P-bodies in 5′ to 3′ degradation
Author / Creator:Forbes Beadle, Lauren ; Love, Jennifer C. ; Shapovalova, Yuliya ; Artemev, Artem ; Rattray, Magnus ; Ashe, Hilary L.
Publisher:United States: Public Library of Science
Journal title:PLoS biology, 2023-01, Vol.21 (1), p.e3001956-e3001956
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Analysis of chromatin organization and gene expression in T cells identifies functional genes for rheumatoid arthritis
Author / Creator:Yang, Jing ; McGovern, Amanda ; Martin, Paul ; Duffus, Kate ; Ge, Xiangyu ; Zarrineh, Peyman ; Morris, Andrew P. ; Adamson, Antony ; Fraser, Peter ; Rattray, Magnus ; Eyre, Stephen
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2020-09, Vol.11 (1), p.4402-4402, Article 4402
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Quantitative single-cell live imaging links HES5 dynamics with cell-state and fate in murine neurogenesis
Author / Creator:Manning, Cerys S. ; Biga, Veronica ; Boyd, James ; Kursawe, Jochen ; Ymisson, Bodvar ; Spiller, David G. ; Sanderson, Christopher M. ; Galla, Tobias ; Rattray, Magnus ; Papalopulu, Nancy
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2019-06, Vol.10 (1), p.2835-19, Article 2835
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OscoNet: inferring oscillatory gene networks
Author / Creator:Cutillo, Luisa ; Boukouvalas, Alexis ; Marinopoulou, Elli ; Papalopulu, Nancy ; Rattray, Magnus
Publisher:England: BioMed Central
Journal title:BMC bioinformatics, 2020-08, Vol.21 (S10), p.351-351, Article 351
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ArticlesPeer ReviewedFull Text
Genome-wide modeling of transcription kinetics reveals patterns of RNA production delays
Author / Creator:Honkela, Antti ; Peltonen, Jaakko ; Topa, Hande ; Charapitsa, Iryna ; Matarese, Filomena ; Grote, Korbinian ; Stunnenberg, Hendrik G. ; Reid, George ; Lawrence, Neil D. ; Rattray, Magnus
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2015-10, Vol.112 (42), p.13115-13120
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HOX paralogs selectively convert binding of ubiquitous transcription factors into tissue-specific patterns of enhancer activation
Author / Creator:Bridoux, Laure ; Zarrineh, Peyman ; Mallen, Joshua ; Phuycharoen, Mike ; Latorre, Victor ; Ladam, Frank ; Losa, Marta ; Baker, Syed Murtuza ; Sagerstrom, Charles ; Mace, Kimberly A. ; Rattray, Magnus ; Bobola, Nicoletta
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2020-12, Vol.16 (12), p.e1009162-e1009162
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Identifying stochastic oscillations in single-cell live imaging time series using Gaussian processes
Author / Creator:Phillips, Nick E. ; Manning, Cerys ; Papalopulu, Nancy ; Rattray, Magnus
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2017-05, Vol.13 (5), p.e1005479-e1005479
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C9ORF72 GGGGCC Expanded Repeats Produce Splicing Dysregulation which Correlates with Disease Severity in Amyotrophic Lateral Sclerosis
Author / Creator:Cooper-Knock, Johnathan ; Bury, Joanna J. ; Heath, Paul R ; Wyles, Matthew ; Higginbottom, Adrian ; Gelsthorpe, Catherine ; Highley, J. Robin ; Hautbergue, Guillaume ; Rattray, Magnus ; Kirby, Janine ; Shaw, Pamela J.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2015-05, Vol.10 (5), p.e0127376
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Multi-omics analysis in primary T cells elucidates mechanisms behind disease-associated genetic loci
Author / Creator:Shi, Chenfu ; Zhao, Danyun ; Butler, Jake ; Frantzeskos, Antonios ; Rossi, Stefano ; Ding, James ; Ferrazzano, Carlo ; Wynn, Charlotte ; Hum, Ryan Malcolm ; Richards, Ellie ; Gupta, Muskan ; Patel, Khadijah ; Yap, Chuan Fu ; Plant, Darren ; Grencis, Richard ; Martin, Paul ; Adamson, Antony ; Eyre, Stephen ; Bowes, John ; Barton, Anne ; Ho, Pauline ; Rattray, Magnus ; Orozco, Gisela
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2025-02, Vol.26 (1), p.26-26
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Identification of differences in CD4+ T-cell gene expression between people with asthma and healthy controls
Author / Creator:Tutino, Mauro ; Hankinson, Jenny ; Murray, Clare ; Lowe, Lesley ; Kerry, Gina ; Rattray, Magnus ; Custovic, Adnan ; Johnston, Sebastian L. ; Shi, Chenfu ; Orozco, Gisela ; Eyre, Stephen ; Martin, Paul ; Simpson, Angela ; Curtin, John A.
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2023-12, Vol.13 (1), p.22796-10, Article 22796
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Sex differences in innate anti-viral immune responses to respiratory viruses and in their clinical outcomes in a birth cohort study
Author / Creator:Regis, Eteri ; Fontanella, Sara ; Lin, Lijing ; Howard, Rebecca ; Haider, Sadia ; Curtin, John A. ; Edwards, Michael R. ; Rattray, Magnus ; Simpson, Angela ; Custovic, Adnan ; Johnston, Sebastian L.
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2021-12, Vol.11 (1), p.23741-23741, Article 23741
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A systems immunology approach to investigate cytokine responses to viruses and bacteria and their association with disease
Author / Creator:Lin, Lijing ; Curtin, John A. ; Regis, Eteri ; Hirsman, Aurica ; Howard, Rebecca ; Tutino, Mauro ; Edwards, Michael R. ; Prosperi, Mattia ; Simpson, Angela ; Rattray, Magnus ; Custovic, Adnan ; Johnston, Sebastian L.
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2022-08, Vol.12 (1), p.13463-13463, Article 13463
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Rheumatoid arthritis reprograms circadian output pathways
Author / Creator:Poolman, Toryn M. ; Gibbs, Julie ; Walker, Amy L. ; Dickson, Suzanna ; Farrell, Laura ; Hensman, James ; Kendall, Alexandra C. ; Maidstone, Robert ; Warwood, Stacey ; Loudon, Andrew ; Rattray, Magnus ; Bruce, Ian N. ; Nicolaou, Anna ; Ray, David W.
Publisher:England: BioMed Central Ltd
Journal title:Arthritis research & therapy, 2019-02, Vol.21 (1), p.47-47, Article 47
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Model-based method for transcription factor target identification with limited data
Author / Creator:Honkela, Antti ; Girardot, Charles ; Gustafson, E. Hilary ; Liu, Ya-Hsin ; Furlong, Eileen E.M ; Lawrence, Neil D ; Rattray, Magnus
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2010-04, Vol.107 (17), p.7793-7798
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Comparative Genome Analysis of Filamentous Fungi Reveals Gene Family Expansions Associated with Fungal Pathogenesis
Author / Creator:Soanes, Darren M. ; Alam, Intikhab ; Cornell, Mike ; Wong, Han Min ; Hedeler, Cornelia ; Paton, Norman W. ; Rattray, Magnus ; Hubbard, Simon J. ; Oliver, Stephen G. ; Talbot, Nicholas J.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2008-06, Vol.3 (6), p.e2300-e2300
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Evolutionary Systems Biology of Amino Acid Biosynthetic Cost in Yeast
Author / Creator:Barton, Michael D. ; Delneri, Daniela ; Oliver, Stephen G. ; Rattray, Magnus ; Bergman, Casey M.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2010-08, Vol.5 (8), p.e11935
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A model of k -mer surprisal to quantify local sequence information content surrounding splice regions
Author / Creator:Humphrey, Sam ; Kerr, Alastair ; Rattray, Magnus ; Dive, Caroline ; Miller, Crispin J.
Publisher:United States: PeerJ. Ltd
Journal title:PeerJ (San Francisco, CA), 2020-11, Vol.8, p.e10063-e10063, Article e10063
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puma: a Bioconductor package for propagating uncertainty in microarray analysis
Author / Creator:Pearson, Richard D ; Liu, Xuejun ; Sanguinetti, Guido ; Milo, Marta ; Lawrence, Neil D ; Rattray, Magnus
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2009-07, Vol.10 (1), p.211-211, Article 211
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A Comprehensive Analysis of Mammalian Mitochondrial Genome Base Composition and Improved Phylogenetic Methods
Author / Creator:Gibson, Andrew ; Gowri-Shankar, Vivek ; Higgs, Paul G ; Rattray, Magnus
Publisher:Oxford: Oxford University Press
Journal title:Molecular biology and evolution, 2005-02, Vol.22 (2), p.251-264
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BGP: identifying gene-specific branching dynamics from single-cell data with a branching Gaussian process

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Combined modelling of mRNA decay dynamics and single-molecule imaging in the Drosophila embryo uncovers a role for P-bodies in 5′ to 3′ degradation

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Analysis of chromatin organization and gene expression in T cells identifies functional genes for rheumatoid arthritis

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Quantitative single-cell live imaging links HES5 dynamics with cell-state and fate in murine neurogenesis

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OscoNet: inferring oscillatory gene networks

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Genome-wide modeling of transcription kinetics reveals patterns of RNA production delays

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HOX paralogs selectively convert binding of ubiquitous transcription factors into tissue-specific patterns of enhancer activation

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Identifying stochastic oscillations in single-cell live imaging time series using Gaussian processes

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C9ORF72 GGGGCC Expanded Repeats Produce Splicing Dysregulation which Correlates with Disease Severity in Amyotrophic Lateral Sclerosis

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Multi-omics analysis in primary T cells elucidates mechanisms behind disease-associated genetic loci

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Identification of differences in CD4+ T-cell gene expression between people with asthma and healthy controls

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Sex differences in innate anti-viral immune responses to respiratory viruses and in their clinical outcomes in a birth cohort study

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A systems immunology approach to investigate cytokine responses to viruses and bacteria and their association with disease

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Rheumatoid arthritis reprograms circadian output pathways

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Model-based method for transcription factor target identification with limited data

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Comparative Genome Analysis of Filamentous Fungi Reveals Gene Family Expansions Associated with Fungal Pathogenesis

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Evolutionary Systems Biology of Amino Acid Biosynthetic Cost in Yeast

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A model of k -mer surprisal to quantify local sequence information content surrounding splice regions

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puma: a Bioconductor package for propagating uncertainty in microarray analysis

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A Comprehensive Analysis of Mammalian Mitochondrial Genome Base Composition and Improved Phylogenetic Methods

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