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965 results for RefSeq

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ArticlesPeer ReviewedFull Text
RefSeq database growth influences the accuracy of k-mer-based lowest common ancestor species identification
Author / Creator:Nasko, Daniel J. ; Koren, Sergey ; Phillippy, Adam M. ; Treangen, Todd J.
Publisher:England: BioMed Central
Journal title:Genome Biology, 2018-10, Vol.19 (1), p.165-165, Article 165
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Lifting of the 1,000 wheat exome project SNPs from Triticum aestivum cv. Chinese Spring assembly RefSeq v1.0 to RefSeq v2.1
Author / Creator:Vasudevan, Akshaya ; Cloutier, Sylvie
Publisher:London: BioMed Central Ltd
Journal title:BMC research notes, 2023-09, Vol.16 (1), p.1-5, Article 220
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A comprehensive evaluation of ensembl, RefSeq, and UCSC annotations in the context of RNA-seq read mapping and gene quantification
Author / Creator:Zhao, Shanrong ; Zhang, Baohong
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2015-02, Vol.16 (1), p.97-97, Article 97
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Comparison of GENCODE and RefSeq gene annotation and the impact of reference geneset on variant effect prediction
Author / Creator:Frankish, Adam ; Uszczynska, Barbara ; Ritchie, Graham RS ; Gonzalez, Jose M ; Pervouchine, Dmitri ; Petryszak, Robert ; Mudge, Jonathan M ; Fonseca, Nuno ; Brazma, Alvis ; Guigo, Roderic ; Harrow, Jennifer
Publisher:England: BioMed Central
Journal title:BMC genomics, 2015-06, Vol.16 (S8), p.S2-S2, Article S2
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Mouse genome annotation by the RefSeq project
Author / Creator:McGarvey, Kelly M. ; Goldfarb, Tamara ; Cox, Eric ; Farrell, Catherine M. ; Gupta, Tripti ; Joardar, Vinita S. ; Kodali, Vamsi K. ; Murphy, Michael R. ; O’Leary, Nuala A. ; Pujar, Shashikant ; Rajput, Bhanu ; Rangwala, Sanjida H. ; Riddick, Lillian D. ; Webb, David ; Wright, Mathew W. ; Murphy, Terence D. ; Pruitt, Kim D.
Publisher:New York: Springer US
Journal title:Mammalian genome, 2015-10, Vol.26 (9-10), p.379-390
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refseqR: an R package for common computational operations with records on RefSeq collection
Author / Creator:Die, Jose V
Publisher:England: Oxford University Press
Journal title:Bioinformatics advances, 2024, Vol.4 (1), p.vbae122
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Filovirus RefSeq Entries: Evaluation and Selection of Filovirus Type Variants, Type Sequences, and Names
Author / Creator:Kuhn, Jens ; Andersen, Kristian ; Bào, Yīmíng ; Bavari, Sina ; Becker, Stephan ; Bennett, Richard ; Bergman, Nicholas ; Blinkova, Olga ; Bradfute, Steven ; Brister, J. ; Bukreyev, Alexander ; Chandran, Kartik ; Chepurnov, Alexander ; Davey, Robert ; Dietzgen, Ralf ; Doggett, Norman ; Dolnik, Olga ; Dye, John ; Enterlein, Sven ; Fenimore, Paul ; Formenty, Pierre ; Freiberg, Alexander ; Garry, Robert ; Garza, Nicole ; Gire, Stephen ; Gonzalez, Jean-Paul ; Griffiths, Anthony ; Happi, Christian ; Hensley, Lisa ; Herbert, Andrew ; Hevey, Michael ; Hoenen, Thomas ; Honko, Anna ; Ignatyev, Georgy ; Jahrling, Peter ; Johnson, Joshua ; Johnson, Karl ; Kindrachuk, Jason ; Klenk, Hans-Dieter ; Kobinger, Gary ; Kochel, Tadeusz ; Lackemeyer, Matthew ; Lackner, Daniel ; Leroy, Eric ; Lever, Mark ; Mühlberger, Elke ; Netesov, Sergey ; Olinger, Gene ; Omilabu, Sunday ; Palacios, Gustavo ; Panchal, Rekha ; Park, Daniel ; Patterson, Jean ; Paweska, Janusz ; Peters, Clarence ; Pettitt, James ; Pitt, Louise ; Radoshitzky, Sheli ; Ryabchikova, Elena ; Saphire, Erica ; Sabeti, Pardis ; Sealfon, Rachel ; Shestopalov, Aleksandr ; Smither, Sophie ; Sullivan, Nancy ; Swanepoel, Robert ; Takada, Ayato ; Towner, Jonathan ; Van der Groen, Guido ; Volchkov, Viktor ; Volchkova, Valentina ; Wahl-Jensen, Victoria ; Warren, Travis ; Warfield, Kelly ; Weidmann, Manfred ; Nichol, Stuart
Publisher:Switzerland: MDPI AG
Journal title:Viruses, 2014-09, Vol.6 (9), p.3663-3682
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RefSeq and Gene-NCBI resources to support comparative genomics
Author / Creator:Pruitt, K D ; Murphy, T D ; Thibaud-Nissen, F ; Kitts, P A
Publisher:Champaign: Oxford University Press
Journal title:Journal of animal science, 2016-09, Vol.94, p.183-184
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P8007 RefSeq and Gene—NCBI resources to support comparative genomics
Author / Creator:Pruitt, K. D. ; Murphy, T. D. ; Thibaud-Nissen, F. ; Kitts, P. A.
Journal title:Journal of animal science, 2016-09, Vol.94 (suppl_4), p.183-184
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GEGA (Gallus Enriched Gene Annotation): an online tool providing genomics and functional information across 47 tissues for a chicken gene-enriched atlas gathering Ensembl and Refseq genome annotations
Author / Creator:Degalez, Fabien ; Bardou, Philippe ; Lagarrigue, Sandrine
Publisher:England: Oxford University Press
Journal title:NAR genomics and bioinformatics, 2024-09, Vol.6 (3), p.lqae101
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Comparison of RefSeq protein-coding regions in human and vertebrate genomes
Author / Creator:Fong, Jessica H ; Murphy, Terence D ; Pruitt, Kim D
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2013-09, Vol.14 (1), p.654-654, Article 654
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Rapid and sensitive detection of genome contamination at scale with FCS-GX
Author / Creator:Astashyn, Alexander ; Tvedte, Eric S. ; Sweeney, Deacon ; Sapojnikov, Victor ; Bouk, Nathan ; Joukov, Victor ; Mozes, Eyal ; Strope, Pooja K. ; Sylla, Pape M. ; Wagner, Lukas ; Bidwell, Shelby L. ; Brown, Larissa C. ; Clark, Karen ; Davis, Emily W. ; Smith-White, Brian ; Hlavina, Wratko ; Pruitt, Kim D. ; Schneider, Valerie A. ; Murphy, Terence D.
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2024-02, Vol.25 (1), p.60-60, Article 60
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Terminating contamination: large-scale search identifies more than 2,000,000 contaminated entries in GenBank
Author / Creator:Steinegger, Martin ; Salzberg, Steven L.
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2020-05, Vol.21 (1), p.115-115, Article 115
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Enhanced genome assembly and a new official gene set for Tribolium castaneum
Author / Creator:Herndon, Nicolae ; Shelton, Jennifer ; Gerischer, Lizzy ; Ioannidis, Panos ; Ninova, Maria ; Dönitz, Jürgen ; Waterhouse, Robert M. ; Liang, Chun ; Damm, Carsten ; Siemanowski, Janna ; Kitzmann, Peter ; Ulrich, Julia ; Dippel, Stefan ; Oberhofer, Georg ; Hu, Yonggang ; Schwirz, Jonas ; Schacht, Magdalena ; Lehmann, Sabrina ; Montino, Alice ; Posnien, Nico ; Gurska, Daniela ; Horn, Thorsten ; Seibert, Jan ; Vargas Jentzsch, Iris M. ; Panfilio, Kristen A. ; Li, Jianwei ; Wimmer, Ernst A. ; Stappert, Dominik ; Roth, Siegfried ; Schröder, Reinhard ; Park, Yoonseong ; Schoppmeier, Michael ; Chung, Ho-Ryun ; Klingler, Martin ; Kittelmann, Sebastian ; Friedrich, Markus ; Chen, Rui ; Altincicek, Boran ; Vilcinskas, Andreas ; Zdobnov, Evgeny ; Griffiths-Jones, Sam ; Ronshaugen, Matthew ; Stanke, Mario ; Brown, Sue J. ; Bucher, Gregor
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2020-01, Vol.21 (1), p.47-13, Article 47
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Keeping up with the genomes: efficient learning of our increasing knowledge of the tree of life
Author / Creator:Zhao, Zhengqiao ; Cristian, Alexandru ; Rosen, Gail
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2020-09, Vol.21 (1), p.412-23, Article 412
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Differences in GenBank and RefSeq annotations may affect genomics data interpretation for Pseudomonas putida KT2440
Publisher:NewsRX LLC
Journal title:Obesity, fitness, & wellness week, 2025-06, p.780
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geneHummus: an R package to define gene families and their expression in legumes and beyond
Author / Creator:Die, Jose V. ; Elmassry, Moamen M. ; LeBlanc, Kimberly H. ; Awe, Olaitan I. ; Dillman, Allissa ; Busby, Ben
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2019-07, Vol.20 (1), p.591-9, Article 591
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Metagenome Proteins and Database Contamination
Author / Creator:Arkhipova, Irina R.
Publisher:United States: American Society for Microbiology
Journal title:mSphere, 2020-11, Vol.5 (6)
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Evidence for the Widespread Coupling of Alternative Splicing and Nonsense-Mediated mRNA Decay in Humans
Author / Creator:Lewis, Benjamin P. ; Green, Richard E. ; Brenner, Steven E.
Publisher:United States: National Academy of Sciences
Journal title:Proceedings of the National Academy of Sciences - PNAS, 2003-01, Vol.100 (1), p.189-192
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Microbial Composition and Genes for Key Metabolic Attributes in the Gut Digesta of Sea Urchins Lytechinus variegatus and Strongylocentrotus purpuratus Using Shotgun Metagenomics
Author / Creator:Hakim, Joseph A. ; Green, George B. H. ; Watts, Stephen A. ; Crowley, Michael R. ; Morrow, Casey D. ; Bej, Asim K.
Publisher:Switzerland: MDPI
Journal title:Current issues in molecular biology, 2021-08, Vol.43 (2), p.978-995
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Showing 1 to 20 of 965 results

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RefSeq database growth influences the accuracy of k-mer-based lowest common ancestor species identification

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Lifting of the 1,000 wheat exome project SNPs from Triticum aestivum cv. Chinese Spring assembly RefSeq v1.0 to RefSeq v2.1

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A comprehensive evaluation of ensembl, RefSeq, and UCSC annotations in the context of RNA-seq read mapping and gene quantification

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Comparison of GENCODE and RefSeq gene annotation and the impact of reference geneset on variant effect prediction

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Mouse genome annotation by the RefSeq project

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refseqR: an R package for common computational operations with records on RefSeq collection

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Filovirus RefSeq Entries: Evaluation and Selection of Filovirus Type Variants, Type Sequences, and Names

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RefSeq and Gene-NCBI resources to support comparative genomics

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P8007 RefSeq and Gene—NCBI resources to support comparative genomics

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GEGA (Gallus Enriched Gene Annotation): an online tool providing genomics and functional information across 47 tissues for a chicken gene-enriched atlas gathering Ensembl and Refseq genome annotations

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Comparison of RefSeq protein-coding regions in human and vertebrate genomes

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Rapid and sensitive detection of genome contamination at scale with FCS-GX

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Terminating contamination: large-scale search identifies more than 2,000,000 contaminated entries in GenBank

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Enhanced genome assembly and a new official gene set for Tribolium castaneum

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Keeping up with the genomes: efficient learning of our increasing knowledge of the tree of life

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Differences in GenBank and RefSeq annotations may affect genomics data interpretation for Pseudomonas putida KT2440

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geneHummus: an R package to define gene families and their expression in legumes and beyond

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Metagenome Proteins and Database Contamination

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Evidence for the Widespread Coupling of Alternative Splicing and Nonsense-Mediated mRNA Decay in Humans

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Microbial Composition and Genes for Key Metabolic Attributes in the Gut Digesta of Sea Urchins Lytechinus variegatus and Strongylocentrotus purpuratus Using Shotgun Metagenomics

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