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ArticlesPeer ReviewedFull Text
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Author / Creator:Rognes, Torbjørn
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2011-06, Vol.12 (1), p.221-221, Article 221
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ArticlesPeer ReviewedFull Text
VSEARCH: a versatile open source tool for metagenomics
Author / Creator:Rognes, Torbjørn ; Flouri, Tomáš ; Nichols, Ben ; Quince, Christopher ; Mahé, Frédéric
Publisher:United States: PeerJ. Ltd
Journal title:PeerJ (San Francisco, CA), 2016-10, Vol.4, p.e2584-e2584
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ArticlesPeer ReviewedFull Text
Swarm: robust and fast clustering method for amplicon-based studies
Author / Creator:Mahé, Frédéric ; Rognes, Torbjørn ; Quince, Christopher ; de Vargas, Colomban ; Dunthorn, Micah
Publisher:United States: PeerJ. Ltd
Journal title:PeerJ (San Francisco, CA), 2014-09, Vol.2, p.e593-e593
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ArticlesPeer ReviewedFull Text
Swarm v2: highly-scalable and high-resolution amplicon clustering
Author / Creator:Mahé, Frédéric ; Rognes, Torbjørn ; Quince, Christopher ; de Vargas, Colomban ; Dunthorn, Micah
Publisher:United States: PeerJ. Ltd
Journal title:PeerJ (San Francisco, CA), 2015-12, Vol.3, p.e1420-e1420, Article e1420
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ArticlesPeer ReviewedFull Text
HoCoRT: host contamination removal tool
Author / Creator:Rumbavicius, Ignas ; Rounge, Trine B. ; Rognes, Torbjørn
Publisher:London: BioMed Central Ltd
Journal title:BMC bioinformatics, 2023-10, Vol.24 (1), p.1-371, Article 371
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ArticlesPeer ReviewedFull Text
MoDLE: high-performance stochastic modeling of DNA loop extrusion interactions
Author / Creator:Rossini, Roberto ; Kumar, Vipin ; Mathelier, Anthony ; Rognes, Torbjørn ; Paulsen, Jonas
Publisher:England: BioMed Central Ltd
Journal title:Genome Biology, 2022-11, Vol.23 (1), p.247-247, Article 247
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ArticlesPeer ReviewedFull Text
NucBreak: location of structural errors in a genome assembly by using paired-end Illumina reads
Author / Creator:Khelik, Ksenia ; Sandve, Geir Kjetil ; Nederbragt, Alexander Johan ; Rognes, Torbjørn
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2020-02, Vol.21 (1), p.66-66, Article 66
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ArticlesPeer ReviewedFull Text
NucDiff: in-depth characterization and annotation of differences between two sets of DNA sequences
Author / Creator:Khelik, Ksenia ; Lagesen, Karin ; Sandve, Geir Kjetil ; Rognes, Torbjørn ; Nederbragt, Alexander Johan
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2017-07, Vol.18 (1), p.338-338, Article 338
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ArticlesPeer ReviewedFull Text
Exploring the gut DNA virome in fecal immunochemical test stool samples reveals associations with lifestyle in a large population-based study
Author / Creator:Istvan, Paula ; Birkeland, Einar ; Avershina, Ekaterina ; Kværner, Ane S. ; Bemanian, Vahid ; Pardini, Barbara ; Tarallo, Sonia ; de Vos, Willem M. ; Rognes, Torbjørn ; Berstad, Paula ; Rounge, Trine B.
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2024-02, Vol.15 (1), p.1791-1791, Article 1791
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Open-Source Sequence Clustering Methods Improve the State Of the Art
Author / Creator:Kopylova, Evguenia ; Navas-Molina, Jose A. ; Mercier, Céline ; Xu, Zhenjiang Zech ; Mahé, Frédéric ; He, Yan ; Zhou, Hong-Wei ; Rognes, Torbjørn ; Caporaso, J. Gregory ; Knight, Rob
Publisher:United States: American Society for Microbiology
Journal title:mSystems, 2016-01, Vol.1 (1)
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ArticlesPeer ReviewedFull Text
Transcriptome analysis of human OXR1 depleted cells reveals its role in regulating the p53 signaling pathway
Author / Creator:Yang, Mingyi ; Lin, Xiaolin ; Rowe, Alexander ; Rognes, Torbjørn ; Eide, Lars ; Bjørås, Magnar
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2015-11, Vol.5 (1), p.17409, Article 17409
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ArticlesPeer ReviewedFull Text
Reduced metagenome sequencing for strain-resolution taxonomic profiles
Author / Creator:Snipen, Lars ; Angell, Inga-Leena ; Rognes, Torbjørn ; Rudi, Knut
Publisher:England: BioMed Central
Journal title:Microbiome, 2021-03, Vol.9 (1), p.79-79, Article 79
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ArticlesPeer ReviewedFull Text
hGSuite HyperBrowser: A web-based toolkit for hierarchical metadata-informed analysis of genomic tracks
Author / Creator:Kalyanasundaram, Sumana ; Lefol, Yohan ; Gundersen, Sveinung ; Rognes, Torbjørn ; Alsøe, Lene ; Nilsen, Hilde Loge ; Hovig, Eivind ; Sandve, Geir Kjetil ; Domanska, Diana
Publisher:United States: Public Library of Science
Journal title:PloS one, 2023-07, Vol.18 (7), p.e0286330-e0286330
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ArticlesPeer ReviewedFull Text
Uracil Accumulation and Mutagenesis Dominated by Cytosine Deamination in CpG Dinucleotides in Mice Lacking UNG and SMUG1
Author / Creator:Alsøe, Lene ; Sarno, Antonio ; Carracedo, Sergio ; Domanska, Diana ; Dingler, Felix ; Lirussi, Lisa ; SenGupta, Tanima ; Tekin, Nuriye Basdag ; Jobert, Laure ; Alexandrov, Ludmil B. ; Galashevskaya, Anastasia ; Rada, Cristina ; Sandve, Geir Kjetil ; Rognes, Torbjørn ; Krokan, Hans E. ; Nilsen, Hilde
Publisher:London: Nature Publishing Group UK
Journal title:Scientific reports, 2017-08, Vol.7 (1), p.7199-14, Article 7199
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ArticlesPeer ReviewedFull Text
The CRCbiome study: a large prospective cohort study examining the role of lifestyle and the gut microbiome in colorectal cancer screening participants
Author / Creator:Kværner, Ane Sørlie ; Birkeland, Einar ; Bucher-Johannessen, Cecilie ; Vinberg, Elina ; Nordby, Jan Inge ; Kangas, Harri ; Bemanian, Vahid ; Ellonen, Pekka ; Botteri, Edoardo ; Natvig, Erik ; Rognes, Torbjørn ; Hovig, Eivind ; Lyle, Robert ; Ambur, Ole Herman ; de Vos, Willem M. ; Bultman, Scott ; Hjartåker, Anette ; Landberg, Rikard ; Song, Mingyang ; Blix, Hege Salvesen ; Ursin, Giske ; Randel, Kristin Ranheim ; de Lange, Thomas ; Hoff, Geir ; Holme, Øyvind ; Berstad, Paula ; Rounge, Trine B.
Publisher:England: BioMed Central Ltd
Journal title:BMC cancer, 2021-08, Vol.21 (1), p.930-14, Article 930
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ArticlesPeer ReviewedFull Text
Single transmembrane peptide DinQ modulates membrane-dependent activities
Author / Creator:Weel-Sneve, Ragnhild ; Kristiansen, Knut Ivan ; Odsbu, Ingvild ; Dalhus, Bjørn ; Booth, James ; Rognes, Torbjørn ; Skarstad, Kirsten ; Bjørås, Magnar
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2013-02, Vol.9 (2), p.e1003260
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ArticlesPeer ReviewedFull Text
AOP-networkFinder—a versatile tool for the reconstruction and visualization of Adverse Outcome Pathway networks from AOP-Wiki
Author / Creator:Yarar, Nurettin ; Martens, Marvin ; Rognes, Torbjørn ; Lavender, Jan ; Dirven, Hubert ; Audouze, Karine ; Wojewodzic, Marcin W
Publisher:England: Oxford University Press
Journal title:Bioinformatics advances, 2025, Vol.5 (1), p.vbaf007
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ArticlesPeer ReviewedFull Text
Normalization of RNA-Sequencing Data from Samples with Varying mRNA Levels
Author / Creator:Aanes, Håvard ; Winata, Cecilia ; Moen, Lars F. ; Østrup, Olga ; Mathavan, Sinnakaruppan ; Collas, Philippe ; Rognes, Torbjørn ; Aleström, Peter
Publisher:United States: Public Library of Science
Journal title:PloS one, 2014-02, Vol.9 (2), p.e89158-e89158
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Evolutionary Paths of the cAMP-Dependent Protein Kinase (PKA) Catalytic Subunits
Author / Creator:Søberg, Kristoffer ; Jahnsen, Tore ; Rognes, Torbjørn ; Skålhegg, Bjørn S. ; Laerdahl, Jon K.
Publisher:United States: Public Library of Science
Journal title:PloS one, 2013-04, Vol.8 (4), p.e60935-e60935
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ArticlesPeer ReviewedFull Text
Continuous and Periodic Expansion of CAG Repeats in Huntington's Disease R6/1 Mice
Author / Creator:Møllersen, Linda ; Rowe, Alexander D. ; Larsen, Elisabeth ; Rognes, Torbjørn ; Klungland, Arne
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2010-12, Vol.6 (12), p.e1001242
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Showing 1 to 20 of 46 results

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Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation

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VSEARCH: a versatile open source tool for metagenomics

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Swarm: robust and fast clustering method for amplicon-based studies

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Swarm v2: highly-scalable and high-resolution amplicon clustering

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HoCoRT: host contamination removal tool

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MoDLE: high-performance stochastic modeling of DNA loop extrusion interactions

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NucBreak: location of structural errors in a genome assembly by using paired-end Illumina reads

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NucDiff: in-depth characterization and annotation of differences between two sets of DNA sequences

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Exploring the gut DNA virome in fecal immunochemical test stool samples reveals associations with lifestyle in a large population-based study

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Open-Source Sequence Clustering Methods Improve the State Of the Art

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Transcriptome analysis of human OXR1 depleted cells reveals its role in regulating the p53 signaling pathway

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Reduced metagenome sequencing for strain-resolution taxonomic profiles

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hGSuite HyperBrowser: A web-based toolkit for hierarchical metadata-informed analysis of genomic tracks

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Uracil Accumulation and Mutagenesis Dominated by Cytosine Deamination in CpG Dinucleotides in Mice Lacking UNG and SMUG1

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The CRCbiome study: a large prospective cohort study examining the role of lifestyle and the gut microbiome in colorectal cancer screening participants

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Single transmembrane peptide DinQ modulates membrane-dependent activities

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AOP-networkFinder—a versatile tool for the reconstruction and visualization of Adverse Outcome Pathway networks from AOP-Wiki

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Normalization of RNA-Sequencing Data from Samples with Varying mRNA Levels

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Evolutionary Paths of the cAMP-Dependent Protein Kinase (PKA) Catalytic Subunits

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Continuous and Periodic Expansion of CAG Repeats in Huntington's Disease R6/1 Mice

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