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ArticlesPeer ReviewedFull Text
Protein mimetic amyloid inhibitor potently abrogates cancer-associated mutant p53 aggregation and restores tumor suppressor function
Author / Creator:Palanikumar, L. ; Karpauskaite, Laura ; Al-Sayegh, Mohamed ; Chehade, Ibrahim ; Alam, Maheen ; Hassan, Sarah ; Maity, Debabrata ; Ali, Liaqat ; Kalmouni, Mona ; Hunashal, Yamanappa ; Ahmed, Jemil ; Houhou, Tatiana ; Karapetyan, Shake ; Falls, Zackary ; Samudrala, Ram ; Pasricha, Renu ; Esposito, Gennaro ; Afzal, Ahmed J. ; Hamilton, Andrew D. ; Kumar, Sunil ; Magzoub, Mazin
Publisher:London: Nature Publishing Group UK
Journal title:Nature communications, 2021-06, Vol.12 (1), p.3962-24, Article 3962
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Multiscale Virtual Screening Optimization for Shotgun Drug Repurposing Using the CANDO Platform
Author / Creator:Hudson, Matthew L ; Samudrala, Ram
Publisher:Switzerland: MDPI AG
Journal title:Molecules (Basel, Switzerland), 2021-04, Vol.26 (9), p.2581
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Identifying Protein Features and Pathways Responsible for Toxicity Using Machine Learning and Tox21: Implications for Predictive Toxicology
Author / Creator:Moukheiber, Lama ; Mangione, William ; Moukheiber, Mira ; Maleki, Saeed ; Falls, Zackary ; Gao, Mingchen ; Samudrala, Ram
Publisher:Switzerland: MDPI AG
Journal title:Molecules (Basel, Switzerland), 2022-05, Vol.27 (9), p.3021
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A Deep-Learning Proteomic-Scale Approach for Drug Design
Author / Creator:Overhoff, Brennan ; Falls, Zackary ; Mangione, William ; Samudrala, Ram
Publisher:Switzerland: MDPI AG
Journal title:Pharmaceuticals (Basel, Switzerland), 2021-12, Vol.14 (12), p.1277
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Combating Ebola with Repurposed Therapeutics Using the CANDO Platform
Author / Creator:Chopra, Gaurav ; Kaushik, Sashank ; Elkin, Peter L ; Samudrala, Ram
Publisher:Switzerland: MDPI AG
Journal title:Molecules (Basel, Switzerland), 2016-11, Vol.21 (12), p.1537-1537
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Exploration of interaction scoring criteria in the CANDO platform
Author / Creator:Falls, Zackary ; Mangione, William ; Schuler, James ; Samudrala, Ram
Publisher:England: BioMed Central Ltd
Journal title:BMC research notes, 2019-06, Vol.12 (1), p.318-318, Article 318
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Accurate prediction of secreted substrates and identification of a conserved putative secretion signal for type III secretion systems
Author / Creator:Samudrala, Ram ; Heffron, Fred ; McDermott, Jason E
Publisher:United States: Public Library of Science
Journal title:PLoS pathogens, 2009-04, Vol.5 (4), p.e1000375-e1000375
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Data access for the 1,000 Plants (1KP) project
Author / Creator:Matasci, Naim ; Hung, Ling-Hong ; Yan, Zhixiang ; Carpenter, Eric J ; Wickett, Norman J ; Mirarab, Siavash ; Nguyen, Nam ; Warnow, Tandy ; Ayyampalayam, Saravanaraj ; Barker, Michael ; Burleigh, J Gordon ; Gitzendanner, Matthew A ; Wafula, Eric ; Der, Joshua P ; dePamphilis, Claude W ; Roure, Béatrice ; Philippe, Hervé ; Ruhfel, Brad R ; Miles, Nicholas W ; Graham, Sean W ; Mathews, Sarah ; Surek, Barbara ; Melkonian, Michael ; Soltis, Douglas E ; Soltis, Pamela S ; Rothfels, Carl ; Pokorny, Lisa ; Shaw, Jonathan A ; DeGironimo, Lisa ; Stevenson, Dennis W ; Villarreal, Juan Carlos ; Chen, Tao ; Kutchan, Toni M ; Rolf, Megan ; Baucom, Regina S ; Deyholos, Michael K ; Samudrala, Ram ; Tian, Zhijian ; Wu, Xiaolei ; Sun, Xiao ; Zhang, Yong ; Wang, Jun ; Leebens-Mack, Jim ; Wong, Gane Ka-Shu
Publisher:United States: Oxford University Press
Journal title:Gigascience, 2014-10, Vol.3 (1), p.17-17, Article 17
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A Systematic Review of Computational Drug Discovery, Development, and Repurposing for Ebola Virus Disease Treatment
Author / Creator:Schuler, James ; Hudson, Matthew L ; Schwartz, Diane ; Samudrala, Ram
Publisher:Switzerland: MDPI AG
Journal title:Molecules (Basel, Switzerland), 2017-10, Vol.22 (10), p.1777
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Incorporating background frequency improves entropy-based residue conservation measures
Author / Creator:Wang, Kai ; Samudrala, Ram
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2006-08, Vol.7 (1), p.385-385, Article 385
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Caries induced cytokine network in the odontoblast layer of human teeth
Author / Creator:Horst, Orapin V ; Horst, Jeremy A ; Samudrala, Ram ; Dale, Beverly A
Publisher:England: BioMed Central Ltd
Journal title:BMC immunology, 2011-01, Vol.12 (1), p.9-9, Article 9
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352 Computational methods for predicting drug combinations for targeting KRAS mutations relevant to non-small cell lung cancer
Author / Creator:Bruggemann, Liana ; Falls, Zackary ; Mangione, William ; Mahajan, Supriya ; Samudrala, Ram
Publisher:Cambridge: Cambridge University Press
Journal title:Journal of clinical and translational science, 2022-04, Vol.6 (s1), p.65-65
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Proteomic Network Analysis of Bronchoalveolar Lavage Fluid in Ex-Smokers to Discover Implicated Protein Targets and Novel Drug Treatments for Chronic Obstructive Pulmonary Disease
Author / Creator:Mammen, Manoj J ; Tu, Chengjian ; Morris, Matthew C ; Richman, Spencer ; Mangione, William ; Falls, Zackary ; Qu, Jun ; Broderick, Gordon ; Sethi, Sanjay ; Samudrala, Ram
Publisher:Switzerland: MDPI AG
Journal title:Pharmaceuticals (Basel, Switzerland), 2022-05, Vol.15 (5), p.566
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Distal effect of amino acid substitutions in CYP2C9 polymorphic variants causes differences in interatomic interactions against (S)-warfarin
Author / Creator:Lertkiatmongkol, Panida ; Assawamakin, Anunchai ; White, George ; Chopra, Gaurav ; Rongnoparut, Pornpimol ; Samudrala, Ram ; Tongsima, Sissades
Publisher:United States: Public Library of Science
Journal title:PloS one, 2013-09, Vol.8 (9), p.e74053
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The enzymatic and metabolic capabilities of early life
Author / Creator:Goldman, Aaron David ; Baross, John A ; Samudrala, Ram
Publisher:United States: Public Library of Science
Journal title:PloS one, 2012-09, Vol.7 (9), p.e39912-e39912
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The implications of APOBEC3-mediated C-to-U RNA editing for human disease
Author / Creator:Van Norden, Melissa ; Falls, Zackary ; Mandloi, Sapan ; Segal, Brahm H. ; Baysal, Bora E. ; Samudrala, Ram ; Elkin, Peter L.
Publisher:London: Nature Publishing Group UK
Journal title:Communications biology, 2024-05, Vol.7 (1), p.529-10, Article 529
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Structure prediction of partial-length protein sequences
Author / Creator:Laurenzi, Adrian ; Hung, Ling-Hong ; Samudrala, Ram
Publisher:Switzerland: MDPI AG
Journal title:International journal of molecular sciences, 2013-07, Vol.14 (7), p.14892-14907
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Structural optimization and de novo design of dengue virus entry inhibitory peptides
Author / Creator:Costin, Joshua M ; Jenwitheesuk, Ekachai ; Lok, Shee-Mei ; Hunsperger, Elizabeth ; Conrads, Kelly A ; Fontaine, Krystal A ; Rees, Craig R ; Rossmann, Michael G ; Isern, Sharon ; Samudrala, Ram ; Michael, Scott F
Publisher:United States: Public Library of Science
Journal title:PLoS neglected tropical diseases, 2010-06, Vol.4 (6), p.e721-e721
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LoCo: a novel main chain scoring function for protein structure prediction based on local coordinates
Author / Creator:Moughon, Stewart E ; Samudrala, Ram
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2011-09, Vol.12 (1), p.368-368, Article 368
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Mouse transcriptome: neutral evolution of 'non-coding' complementary DNAs
Author / Creator:Wang, Jun ; Zhang, Jianguo ; Zheng, Hongkun ; Li, Jun ; Liu, Dongyuan ; Li, Heng ; Samudrala, Ram ; Yu, Jun ; Wong, Gane Ka-Shu
Publisher:England: Nature Publishing Group
Journal title:Nature (London), 2004-10, Vol.431 (7010), p.1 p following 757; discussion following 757-1 p following 757; discussion following 757
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Showing 1 to 20 of 69 results

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Protein mimetic amyloid inhibitor potently abrogates cancer-associated mutant p53 aggregation and restores tumor suppressor function

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Multiscale Virtual Screening Optimization for Shotgun Drug Repurposing Using the CANDO Platform

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Identifying Protein Features and Pathways Responsible for Toxicity Using Machine Learning and Tox21: Implications for Predictive Toxicology

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A Deep-Learning Proteomic-Scale Approach for Drug Design

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Combating Ebola with Repurposed Therapeutics Using the CANDO Platform

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Exploration of interaction scoring criteria in the CANDO platform

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Accurate prediction of secreted substrates and identification of a conserved putative secretion signal for type III secretion systems

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Data access for the 1,000 Plants (1KP) project

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A Systematic Review of Computational Drug Discovery, Development, and Repurposing for Ebola Virus Disease Treatment

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Incorporating background frequency improves entropy-based residue conservation measures

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Caries induced cytokine network in the odontoblast layer of human teeth

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352 Computational methods for predicting drug combinations for targeting KRAS mutations relevant to non-small cell lung cancer

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Proteomic Network Analysis of Bronchoalveolar Lavage Fluid in Ex-Smokers to Discover Implicated Protein Targets and Novel Drug Treatments for Chronic Obstructive Pulmonary Disease

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Distal effect of amino acid substitutions in CYP2C9 polymorphic variants causes differences in interatomic interactions against (S)-warfarin

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The enzymatic and metabolic capabilities of early life

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The implications of APOBEC3-mediated C-to-U RNA editing for human disease

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Structure prediction of partial-length protein sequences

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Structural optimization and de novo design of dengue virus entry inhibitory peptides

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LoCo: a novel main chain scoring function for protein structure prediction based on local coordinates

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Mouse transcriptome: neutral evolution of 'non-coding' complementary DNAs

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