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ArticlesPeer ReviewedFull Text
A comprehensive map of insulator elements for the Drosophila genome
Author / Creator:Nègre, Nicolas ; Brown, Christopher D ; Shah, Parantu K ; Kheradpour, Pouya ; Morrison, Carolyn A ; Henikoff, Jorja G ; Feng, Xin ; Ahmad, Kami ; Russell, Steven ; White, Robert A H ; Stein, Lincoln ; Henikoff, Steven ; Kellis, Manolis ; White, Kevin P
Publisher:United States: Public Library of Science
Journal title:PLoS genetics, 2010-01, Vol.6 (1), p.e1000814-e1000814
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TRIM28 and Interacting KRAB-ZNFs control self-renewal of human pluripotent stem cells through epigenetic repression of pro-differentiation genes
Author / Creator:Oleksiewicz, Urszula ; Gładych, Marta ; Raman, Ayush T ; Heyn, Holger ; Mereu, Elisabetta ; Chlebanowska, Paula ; Andrzejewska, Anastazja ; Sozańska, Barbara ; Samant, Neha ; Fąk, Katarzyna ; Auguścik, Paulina ; Kosiński, Marcin ; Wróblewska, Joanna P ; Tomczak, Katarzyna ; Kulcenty, Katarzyna ; Płoski, Rafał ; Biecek, Przemysław ; Esteller, Manel ; Shah, Parantu K ; Rai, Kunal ; Wiznerowicz, Maciej
Publisher:Elsevier
Journal title:Scientific reports, 2017-12
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Determinants of antigenicity and specificity in immune response for protein sequences
Author / Creator:Wang, Yulong ; Wu, Wenjun ; Negre, Nicolas N ; White, Kevin P ; Li, Cheng ; Shah, Parantu K
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2011-06, Vol.12 (1), p.251-251, Article 251
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canEvolve: a web portal for integrative oncogenomics
Author / Creator:Samur, Mehmet Kemal ; Yan, Zhenyu ; Wang, Xujun ; Cao, Qingyi ; Munshi, Nikhil C ; Li, Cheng ; Shah, Parantu K
Publisher:United States: Public Library of Science
Journal title:PloS one, 2013-02, Vol.8 (2), p.e56228-e56228
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Genomic analysis of estrogen cascade reveals histone variant H2A.Z associated with breast cancer progression
Author / Creator:Hua, Sujun ; Kallen, Caleb B ; Dhar, Ruby ; Baquero, Maria T ; Mason, Christopher E ; Russell, Beth A ; Shah, Parantu K ; Liu, Jiang ; Khramtsov, Andrey ; Tretiakova, Maria S ; Krausz, Thomas N ; Olopade, Olufunmilayo I ; Rimm, David L ; White, Kevin P
Publisher:London: Nature Publishing Group UK
Journal title:Molecular systems biology, 2008, Vol.4 (1), p.188-n/a
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Classify hyperdiploidy status of multiple myeloma patients using gene expression profiles
Author / Creator:Li, Yingxiang ; Wang, Xujun ; Zheng, Haiyang ; Wang, Chengyang ; Minvielle, Stéphane ; Magrangeas, Florence ; Avet-Loiseau, Hervé ; Shah, Parantu K ; Zhang, Yong ; Munshi, Nikhil C ; Li, Cheng
Publisher:United States: Public Library of Science
Journal title:PloS one, 2013-03, Vol.8 (3), p.e58809-e58809
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The dChip survival analysis module for microarray data
Author / Creator:Amin, Samir B ; Shah, Parantu K ; Yan, Aimin ; Adamia, Sophia ; Minvielle, Stéphane ; Avet-Loiseau, Hervé ; Munshi, Nikhil C ; Li, Cheng
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2011-03, Vol.12 (1), p.72-72, Article 72
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A cis-regulatory map of the Drosophila genome
Author / Creator:Nègre, Nicolas ; Brown, Christopher D. ; Ma, Lijia ; Bristow, Christopher Aaron ; Miller, Steven W. ; Wagner, Ulrich ; Kheradpour, Pouya ; Eaton, Matthew L. ; Loriaux, Paul ; Sealfon, Rachel ; Li, Zirong ; Ishii, Haruhiko ; Spokony, Rebecca F. ; Chen, Jia ; Hwang, Lindsay ; Cheng, Chao ; Auburn, Richard P. ; Davis, Melissa B. ; Domanus, Marc ; Shah, Parantu K. ; Morrison, Carolyn A. ; Zieba, Jennifer ; Suchy, Sarah ; Senderowicz, Lionel ; Victorsen, Alec ; Bild, Nicholas A. ; Grundstad, A. Jason ; Hanley, David ; MacAlpine, David M. ; Mannervik, Mattias ; Venken, Koen ; Bellen, Hugo ; White, Robert ; Gerstein, Mark ; Russell, Steven ; Grossman, Robert L. ; Ren, Bing ; Posakony, James W. ; Kellis, Manolis ; White, Kevin P.
Publisher:London: Nature Publishing Group UK
Journal title:Nature (London), 2011-03, Vol.471 (7339), p.527-531
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Lessons from a decade of integrating cancer copy number alterations with gene expression profiles
Author / Creator:HUANG, Norman ; SHAH, Parantu K ; CHENG LI
Publisher:Oxford: Oxford University Press
Journal title:Briefings in bioinformatics, 2012-05, Vol.13 (3), p.305-316
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Gene expression profile alone is inadequate in predicting complete response in multiple myeloma
Author / Creator:Amin, S B ; Yip, W-K ; Minvielle, S ; Broyl, A ; Li, Y ; Hanlon, B ; Swanson, D ; Shah, P K ; Moreau, P ; van der Holt, B ; van Duin, M ; Magrangeas, F ; Pieter Sonneveld, P ; Anderson, K C ; Li, C ; Avet-Loiseau, H ; Munshi, N C
Publisher:London: Nature Publishing Group UK
Journal title:Leukemia, 2014-11, Vol.28 (11), p.2229-2234
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The shaping and functional consequences of the dosage effect landscape in multiple myeloma
Author / Creator:Samur, Mehmet K ; Shah, Parantu K ; Wang, Xujun ; Minvielle, Stéphane ; Magrangeas, Florence ; Avet-Loiseau, Hervé ; Munshi, Nikhil C ; Li, Cheng
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2013-10, Vol.14 (1), p.672-672, Article 672
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PASBio: predicate-argument structures for event extraction in molecular biology
Author / Creator:Wattarujeekrit, Tuangthong ; Shah, Parantu K ; Collier, Nigel
Publisher:England: BioMed Central Ltd
Journal title:BMC bioinformatics, 2004-10, Vol.5 (1), p.155-155, Article 155
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Extraction of transcript diversity from scientific literature
Author / Creator:Shah, Parantu K ; Jensen, Lars J ; Boué, Stéphanie ; Bork, Peer
Publisher:United States: Public Library of Science
Journal title:PLoS computational biology, 2005-06, Vol.1 (1), p.e10-e10
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TRIM24 links glucose metabolism with transformation of human mammary epithelial cells
Author / Creator:Pathiraja, T N ; Thakkar, K N ; Jiang, S ; Stratton, S ; Liu, Z ; Gagea, M ; Shi, X ; Shah, P K ; Phan, L ; Lee, M-H ; Andersen, J ; Stampfer, M ; Barton, M C
Publisher:London: Nature Publishing Group UK
Journal title:Oncogene, 2015-05, Vol.34 (22), p.2836-2845
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Editorial
Author / Creator:Wiznerowicz, Maciej ; Shah, Parantu K ; Andersen, Jannik N.
Publisher:Termedia Publishing House
Journal title:Contemporary oncology (Poznań, Poland), 2015-01, Vol.19 (1A), p.1-2
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Transcription factor-pathway co-expression analysis reveals cooperation between SP1 and ESR1 on dysregulating cell cycle arrest in non-hyperdiploid multiple myeloma
Author / Creator:Wang, Xujun ; Yan, Zhenyu ; Fulciniti, Mariateresa ; Li, Yingxiang ; Gkotzamanidou, Maria ; Amin, Samir B ; Shah, Parantu K ; Zhang, Yong ; Munshi, Nikhil C ; Li, Cheng
Journal title:Leukemia, 2013-08, Vol.28 (4), p.894-903
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Computational characterisation of cancer molecular profiles derived using next generation sequencing
Author / Creator:Oleksiewicz, Urszula ; Tomczak, Katarzyna ; Woropaj, Jakub ; Markowska, Monika ; Stępniak, Piotr ; Shah, Parantu K
Publisher:Termedia Publishing House
Journal title:Contemporary oncology (Poznań, Poland), 2015-01, Vol.19 (1A), p.A78-A91
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A Comprehensive Map of Insulator Elements for the Drosophila Genome: e1000814
Author / Creator:Nègre, Nicolas ; Brown, Christopher D ; Shah, Parantu K ; Kheradpour, Pouya ; Morrison, Carolyn A ; Henikoff, Jorja G ; Feng, Xin ; Ahmad, Kami ; Russell, Steven ; White, Robert AH ; Stein, Lincoln ; Henikoff, Steven ; Kellis, Manolis ; White, Kevin P
Publisher:San Francisco: Public Library of Science
Journal title:PLoS genetics, 2010-01, Vol.6 (1)
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Classify Hyperdiploidy Status of Multiple Myeloma Patients Using Gene Expression Profiles. e58809
Author / Creator:Li, Yingxiang ; Wang, Xujun ; Zheng, Haiyang ; Wang, Chengyang ; Minvielle, Stephane ; Magrangeas, Florence ; Avet-Loiseau, Herve ; Shah, Parantu K ; Zhang, Yong ; Munshi, Nikhil C
Journal title:PloS one, 2013-03, Vol.8 (3)
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Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE
Author / Creator:Roy, Sushmita ; Ernst, Jason ; Kharchenko, Peter V ; Kheradpour, Pouya ; Negre, Nicolas ; Eaton, Matthew L ; Landolin, Jane M ; Bristow, Christopher A ; Ma, Lijia ; Lin, Michael F ; Washietl, Stefan ; Arshinoff, Bradley I ; Ay, Ferhat ; Meyer, Patrick E ; Robine, Nicolas ; Washington, Nicole L ; Di Stefano, Luisa ; Berezikov, Eugene ; Brown, Christopher D ; Candeias, Rogerio ; Carlson, Joseph W ; Carr, Adrian ; Jungreis, Irwin ; Marbach, Daniel ; Sealfon, Rachel ; Tolstorukov, Michael Y ; Will, Sebastian ; Alekseyenko, Artyom A ; Artieri, Carlo ; Booth, Benjamin W ; Brooks, Angela N ; Dai, Qi ; Davis, Carrie A ; Duff, Michael O ; Feng, Xin ; Gorchakov, Andrey A ; Gu, Tingting ; Henikoff, Jorja G ; Kapranov, Philipp ; Li, Renhua ; MacAlpine, Heather K ; Malone, John ; Minoda, Aki ; Nordman, Jared ; Okamura, Katsutomo ; Perry, Marc ; Powell, Sara K ; Riddle, Nicole C ; Sakai, Akiko ; Samsonova, Anastasia ; Sandler, Jeremy E ; Schwartz, Yuri B ; Sher, Noa ; Spokony, Rebecca ; Sturgill, David ; van Baren, Marijke ; Wan, Kenneth H ; Yang, Li ; Yu, Charles ; Feingold, Elise ; Good, Peter ; Guyer, Mark ; Lowdon, Rebecca ; Ahmad, Kami ; Andrews, Justen ; Berger, Bonnie ; Brenner, Steven E ; Brent, Michael R ; Cherbas, Lucy ; Elgin, Sarah C.R ; Gingeras, Thomas R ; Grossman, Robert ; Hoskins, Roger A ; Kaufman, Thomas C ; Kent, William ; Kuroda, Mitzi I ; Orr-Weaver, Terry ; Perrimon, Norbert ; Pirrotta, Vincenzo ; Posakony, James W ; Ren, Bing ; Russell, Steven ; Cherbas, Peter ; Graveley, Brenton R ; Lewis, Suzanna ; Micklem, Gos ; Oliver, Brian ; Park, Peter J ; Celniker, Susan E ; Henikoff, Steven ; Karpen, Gary H ; Lai, Eric C ; MacAlpine, David M ; Stein, Lincoln D ; White, Kevin P ; Kellis, Manolis
Publisher:Washington, DC: American Association for the Advancement of Science
Journal title:Science (American Association for the Advancement of Science), 2010-12, Vol.330 (6012), p.1787-1797
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A comprehensive map of insulator elements for the Drosophila genome

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TRIM28 and Interacting KRAB-ZNFs control self-renewal of human pluripotent stem cells through epigenetic repression of pro-differentiation genes

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Determinants of antigenicity and specificity in immune response for protein sequences

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canEvolve: a web portal for integrative oncogenomics

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Genomic analysis of estrogen cascade reveals histone variant H2A.Z associated with breast cancer progression

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Classify hyperdiploidy status of multiple myeloma patients using gene expression profiles

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The dChip survival analysis module for microarray data

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A cis-regulatory map of the Drosophila genome

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Lessons from a decade of integrating cancer copy number alterations with gene expression profiles

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Gene expression profile alone is inadequate in predicting complete response in multiple myeloma

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The shaping and functional consequences of the dosage effect landscape in multiple myeloma

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PASBio: predicate-argument structures for event extraction in molecular biology

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Extraction of transcript diversity from scientific literature

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TRIM24 links glucose metabolism with transformation of human mammary epithelial cells

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Editorial

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Transcription factor-pathway co-expression analysis reveals cooperation between SP1 and ESR1 on dysregulating cell cycle arrest in non-hyperdiploid multiple myeloma

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Computational characterisation of cancer molecular profiles derived using next generation sequencing

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A Comprehensive Map of Insulator Elements for the Drosophila Genome: e1000814

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Classify Hyperdiploidy Status of Multiple Myeloma Patients Using Gene Expression Profiles. e58809

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Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE

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